Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation

EMBO Journal

Volumn 33, Issue 9, 2014, Pages 981-993

  Bazzini, Ariel A ^a   Johnstone, Timothy G ^a   Christiano, Romain ^a   MacKowiak, Sebastian D ^b   Obermayer, Benedikt ^b   Fleming, Elizabeth S ^a   Vejnar, Charles E ^a   Lee, Miler T ^a   Rajewsky, Nikolaus ^b   Walther, Tobias C ^a   Giraldez, Antonio J ^a  

^a YALE UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b MAX DELBRÜCK CENTER FOR MOLECULAR MEDICINE   (Germany)

Author keywords

micropeptides; non coding RNA; ribosome profiling; small ORFs; translation

Indexed keywords

LONG UNTRANSLATED RNA; MESSENGER RNA; RIBOSOME RNA; RNA; SMALL NUCLEOLAR RNA; TRANSCRIPTOME; UNTRANSLATED RNA;

AMINO ACID SEQUENCE; ARABIDOPSIS THALIANA; ARTICLE; CAENORHABDITIS ELEGANS; CODON USAGE; DROSOPHILA MELANOGASTER; EMBRYO; EXON; GENETIC CODE; GENETIC CONSERVATION; HUMAN; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PERIODICITY; PRIORITY JOURNAL; RAT; RIBOSOME; RNA TRANSLATION; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; STRONGYLOCENTROTUS PURPURATUS; TANDEM MASS SPECTROMETRY; XENOPUS TROPICALIS; ZEBRA FISH;

ANIMALS; BASE SEQUENCE; COMPUTATIONAL BIOLOGY; CONSERVED SEQUENCE; EVOLUTION, MOLECULAR; GENE EXPRESSION PROFILING; HUMANS; MOLECULAR SEQUENCE DATA; NUCLEASE PROTECTION ASSAYS; OLIGOPEPTIDES; OPEN READING FRAMES; RIBOSOMES; RNA, MESSENGER; SEQUENCE ANALYSIS, RNA; ZEBRAFISH;

EID: 84899884309     PISSN: 02614189     EISSN: 14602075     Source Type: Journal    
DOI: 10.1002/embj.201488411     Document Type: Article

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