-
1
-
-
84941117053
-
The conserved GTPase LepA contributes mainly to translation initiation in Escherichia coli
-
Balakrishnan R., Oman K., Shoji S., Bundschuh R., Fredrick K. The conserved GTPase LepA contributes mainly to translation initiation in Escherichia coli. Nucleic Acids Res. 2014, 42:13370-13383.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 13370-13383
-
-
Balakrishnan, R.1
Oman, K.2
Shoji, S.3
Bundschuh, R.4
Fredrick, K.5
-
2
-
-
84927635725
-
Determinants of the rate of mRNA translocation in bacterial protein synthesis
-
Borg A., Ehrenberg M. Determinants of the rate of mRNA translocation in bacterial protein synthesis. J. Mol. Biol. 2015, 427:1835-1847.
-
(2015)
J. Mol. Biol.
, vol.427
, pp. 1835-1847
-
-
Borg, A.1
Ehrenberg, M.2
-
3
-
-
84903197929
-
Programmed -frameshifting by kinetic partitioning during impeded translocation
-
Caliskan N., Katunin V.I., Belardinelli R., Peske F., Rodnina M.V. Programmed -frameshifting by kinetic partitioning during impeded translocation. Cell 2014, 157:1619-1631.
-
(2014)
Cell
, vol.157
, pp. 1619-1631
-
-
Caliskan, N.1
Katunin, V.I.2
Belardinelli, R.3
Peske, F.4
Rodnina, M.V.5
-
4
-
-
84927912034
-
Changed in translation: mRNA recoding by -programmed ribosomal frameshifting
-
Caliskan N., Peske F., Rodnina M.V. Changed in translation: mRNA recoding by -programmed ribosomal frameshifting. Trends Biochem. Sci. 2015, 40:265-274.
-
(2015)
Trends Biochem. Sci.
, vol.40
, pp. 265-274
-
-
Caliskan, N.1
Peske, F.2
Rodnina, M.V.3
-
5
-
-
0028584414
-
Determination of the optimal aligned spacing between the Shine-Dalgarno sequence and the translation initiation codon of Escherichia coli mRNAs
-
Chen H., Bjerknes M., Kumar R., Jay E. Determination of the optimal aligned spacing between the Shine-Dalgarno sequence and the translation initiation codon of Escherichia coli mRNAs. Nucleic Acids Res. 1994, 22:4953-4957.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4953-4957
-
-
Chen, H.1
Bjerknes, M.2
Kumar, R.3
Jay, E.4
-
6
-
-
84906794802
-
Dynamic pathways of -translational frameshifting
-
Chen J., Petrov A., Johansson M., Tsai A., O'Leary S.E., Puglisi J.D. Dynamic pathways of -translational frameshifting. Nature 2014, 512:328-332.
-
(2014)
Nature
, vol.512
, pp. 328-332
-
-
Chen, J.1
Petrov, A.2
Johansson, M.3
Tsai, A.4
O'Leary, S.E.5
Puglisi, J.D.6
-
7
-
-
84871921644
-
EF-is essential for rapid synthesis of proteins containing consecutive proline residues
-
Doerfel L.K., Wohlgemuth I., Kothe C., Peske F., Urlaub H., Rodnina M.V. EF-is essential for rapid synthesis of proteins containing consecutive proline residues. Science 2013, 339:85-88.
-
(2013)
Science
, vol.339
, pp. 85-88
-
-
Doerfel, L.K.1
Wohlgemuth, I.2
Kothe, C.3
Peske, F.4
Urlaub, H.5
Rodnina, M.V.6
-
8
-
-
33645277360
-
Endonucleolytic cleavage of eukaryotic mRNAs with stalls in translation elongation
-
Doma M.K., Parker R. Endonucleolytic cleavage of eukaryotic mRNAs with stalls in translation elongation. Nature 2006, 440:561-564.
-
(2006)
Nature
, vol.440
, pp. 561-564
-
-
Doma, M.K.1
Parker, R.2
-
9
-
-
84889593808
-
Ribosome profiling reveals pervasive and regulated stop codon readthrough in Drosophila melanogaster
-
Dunn J.G., Foo C.K., Belletier N.G., Gavis E.R., Weissman J.S. Ribosome profiling reveals pervasive and regulated stop codon readthrough in Drosophila melanogaster. eLife 2013, 2:e01179.
-
(2013)
eLife
, vol.2
, pp. e01179
-
-
Dunn, J.G.1
Foo, C.K.2
Belletier, N.G.3
Gavis, E.R.4
Weissman, J.S.5
-
10
-
-
84896863244
-
Dom34 rescues ribosomes in 3' untranslated regions
-
Guydosh N.R., Green R. Dom34 rescues ribosomes in 3' untranslated regions. Cell 2014, 156:950-962.
-
(2014)
Cell
, vol.156
, pp. 950-962
-
-
Guydosh, N.R.1
Green, R.2
-
11
-
-
84903458015
-
Correcting direct effects of ethanol on translation and transcription machinery confers ethanol tolerance in bacteria
-
Haft R.J., Keating D.H., Schwaegler T., Schwalbach M.S., Vinokur J., Tremaine M., Peters J.M., Kotlajich M.V., Pohlmann E.L., Ong I.M., et al. Correcting direct effects of ethanol on translation and transcription machinery confers ethanol tolerance in bacteria. Proc. Natl. Acad. Sci. USA 2014, 111:E2576-E2585.
-
(2014)
Proc. Natl. Acad. Sci. USA
, vol.111
, pp. E2576-E2585
-
-
Haft, R.J.1
Keating, D.H.2
Schwaegler, T.3
Schwalbach, M.S.4
Vinokur, J.5
Tremaine, M.6
Peters, J.M.7
Kotlajich, M.V.8
Pohlmann, E.L.9
Ong, I.M.10
-
12
-
-
0024835265
-
Selection of the initiator tRNA by Escherichia coli initiation factors
-
Hartz D., McPheeters D.S., Gold L. Selection of the initiator tRNA by Escherichia coli initiation factors. Genes Dev. 1989, 3(12A):1899-1912.
-
(1989)
Genes Dev.
, vol.3
, Issue.12
, pp. 1899-1912
-
-
Hartz, D.1
McPheeters, D.S.2
Gold, L.3
-
13
-
-
62549134121
-
Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling
-
Ingolia N.T., Ghaemmaghami S., Newman J.R., Weissman J.S. Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling. Science 2009, 324:218-223.
-
(2009)
Science
, vol.324
, pp. 218-223
-
-
Ingolia, N.T.1
Ghaemmaghami, S.2
Newman, J.R.3
Weissman, J.S.4
-
14
-
-
81055155799
-
Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes
-
Ingolia N.T., Lareau L.F., Weissman J.S. Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes. Cell 2011, 147:789-802.
-
(2011)
Cell
, vol.147
, pp. 789-802
-
-
Ingolia, N.T.1
Lareau, L.F.2
Weissman, J.S.3
-
15
-
-
84878912996
-
Arrest peptides: cis-acting modulators of translation
-
Ito K., Chiba S. Arrest peptides: cis-acting modulators of translation. Annu. Rev. Biochem. 2013, 82:171-202.
-
(2013)
Annu. Rev. Biochem.
, vol.82
, pp. 171-202
-
-
Ito, K.1
Chiba, S.2
-
16
-
-
84928385447
-
Protein folding. Translational tuning optimizes nascent protein folding in cells
-
Kim S.J., Yoon J.S., Shishido H., Yang Z., Rooney L.A., Barral J.M., Skach W.R. Protein folding. Translational tuning optimizes nascent protein folding in cells. Science 2015, 348:444-448.
-
(2015)
Science
, vol.348
, pp. 444-448
-
-
Kim, S.J.1
Yoon, J.S.2
Shishido, H.3
Yang, Z.4
Rooney, L.A.5
Barral, J.M.6
Skach, W.R.7
-
17
-
-
0028007434
-
RRNA-mRNA base pairing stimulates a programmed -ribosomal frameshift
-
Larsen B., Wills N.M., Gesteland R.F., Atkins J.F. rRNA-mRNA base pairing stimulates a programmed -ribosomal frameshift. J. Bacteriol. 1994, 176:6842-6851.
-
(1994)
J. Bacteriol.
, vol.176
, pp. 6842-6851
-
-
Larsen, B.1
Wills, N.M.2
Gesteland, R.F.3
Atkins, J.F.4
-
18
-
-
84860231100
-
The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria
-
Li G.W., Oh E., Weissman J.S. The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria. Nature 2012, 484:538-541.
-
(2012)
Nature
, vol.484
, pp. 538-541
-
-
Li, G.W.1
Oh, E.2
Weissman, J.S.3
-
19
-
-
84899550455
-
Quantifying absolute protein synthesis rates reveals principles underlying allocation of cellular resources
-
Li G.W., Burkhardt D., Gross C., Weissman J.S. Quantifying absolute protein synthesis rates reveals principles underlying allocation of cellular resources. Cell 2014, 157:624-635.
-
(2014)
Cell
, vol.157
, pp. 624-635
-
-
Li, G.W.1
Burkhardt, D.2
Gross, C.3
Weissman, J.S.4
-
20
-
-
84873467908
-
Cotranslational response to proteotoxic stress by elongation pausing of ribosomes
-
Liu B., Han Y., Qian S.B. Cotranslational response to proteotoxic stress by elongation pausing of ribosomes. Mol. Cell 2013, 49:453-463.
-
(2013)
Mol. Cell
, vol.49
, pp. 453-463
-
-
Liu, B.1
Han, Y.2
Qian, S.B.3
-
21
-
-
82055164092
-
ViennaRNA Package 2.0
-
Lorenz R., Bernhart S.H., Höner Zu Siederdissen C., Tafer H., Flamm C., Stadler P.F., Hofacker I.L. ViennaRNA Package 2.0. Algorithms Mol. Biol. 2011, 6:26.
-
(2011)
Algorithms Mol. Biol.
, vol.6
, pp. 26
-
-
Lorenz, R.1
Bernhart, S.H.2
Höner Zu Siederdissen, C.3
Tafer, H.4
Flamm, C.5
Stadler, P.F.6
Hofacker, I.L.7
-
22
-
-
84868324214
-
Observation of dually decoded regions of the human genome using ribosome profiling data
-
Michel A.M., Choudhury K.R., Firth A.E., Ingolia N.T., Atkins J.F., Baranov P.V. Observation of dually decoded regions of the human genome using ribosome profiling data. Genome Res. 2012, 22:2219-2229.
-
(2012)
Genome Res.
, vol.22
, pp. 2219-2229
-
-
Michel, A.M.1
Choudhury, K.R.2
Firth, A.E.3
Ingolia, N.T.4
Atkins, J.F.5
Baranov, P.V.6
-
23
-
-
84925659421
-
Effect of codon adaptation on codon-level and gene-level translation efficiency in vivo
-
Nakahigashi K., Takai Y., Shiwa Y., Wada M., Honma M., Yoshikawa H., Tomita M., Kanai A., Mori H. Effect of codon adaptation on codon-level and gene-level translation efficiency in vivo. BMC Genomics 2014, 15:1115.
-
(2014)
BMC Genomics
, vol.15
, pp. 1115
-
-
Nakahigashi, K.1
Takai, Y.2
Shiwa, Y.3
Wada, M.4
Honma, M.5
Yoshikawa, H.6
Tomita, M.7
Kanai, A.8
Mori, H.9
-
24
-
-
84878820561
-
RRNA:mRNA pairing alters the length and the symmetry of mRNA-protected fragments in ribosome profiling experiments
-
O'Connor P.B., Li G.W., Weissman J.S., Atkins J.F., Baranov P.V. rRNA:mRNA pairing alters the length and the symmetry of mRNA-protected fragments in ribosome profiling experiments. Bioinformatics 2013, 29:1488-1491.
-
(2013)
Bioinformatics
, vol.29
, pp. 1488-1491
-
-
O'Connor, P.B.1
Li, G.W.2
Weissman, J.S.3
Atkins, J.F.4
Baranov, P.V.5
-
25
-
-
83255164895
-
Selective ribosome profiling reveals the cotranslational chaperone action of trigger factor in vivo
-
Oh E., Becker A.H., Sandikci A., Huber D., Chaba R., Gloge F., Nichols R.J., Typas A., Gross C.A., Kramer G., et al. Selective ribosome profiling reveals the cotranslational chaperone action of trigger factor in vivo. Cell 2011, 147:1295-1308.
-
(2011)
Cell
, vol.147
, pp. 1295-1308
-
-
Oh, E.1
Becker, A.H.2
Sandikci, A.3
Huber, D.4
Chaba, R.5
Gloge, F.6
Nichols, R.J.7
Typas, A.8
Gross, C.A.9
Kramer, G.10
-
26
-
-
84887462372
-
Tools for characterizing bacterial protein synthesis inhibitors
-
Orelle C., Carlson S., Kaushal B., Almutairi M.M., Liu H., Ochabowicz A., Quan S., Pham V.C., Squires C.L., Murphy B.T., Mankin A.S. Tools for characterizing bacterial protein synthesis inhibitors. Antimicrob. Agents Chemother. 2013, 57:5994-6004.
-
(2013)
Antimicrob. Agents Chemother.
, vol.57
, pp. 5994-6004
-
-
Orelle, C.1
Carlson, S.2
Kaushal, B.3
Almutairi, M.M.4
Liu, H.5
Ochabowicz, A.6
Quan, S.7
Pham, V.C.8
Squires, C.L.9
Murphy, B.T.10
Mankin, A.S.11
-
27
-
-
0036354818
-
Toeprint analysis of the positioning of translation apparatus components at initiation and termination codons of fungal mRNAs
-
Sachs M.S., Wang Z., Gaba A., Fang P., Belk J., Ganesan R., Amrani N., Jacobson A. Toeprint analysis of the positioning of translation apparatus components at initiation and termination codons of fungal mRNAs. Methods 2002, 26:105-114.
-
(2002)
Methods
, vol.26
, pp. 105-114
-
-
Sachs, M.S.1
Wang, Z.2
Gaba, A.3
Fang, P.4
Belk, J.5
Ganesan, R.6
Amrani, N.7
Jacobson, A.8
-
28
-
-
84871918588
-
Translation elongation factor EF-alleviates ribosome stalling at polyproline stretches
-
Ude S., Lassak J., Starosta A.L., Kraxenberger T., Wilson D.N., Jung K. Translation elongation factor EF-alleviates ribosome stalling at polyproline stretches. Science 2013, 339:82-85.
-
(2013)
Science
, vol.339
, pp. 82-85
-
-
Ude, S.1
Lassak, J.2
Starosta, A.L.3
Kraxenberger, T.4
Wilson, D.N.5
Jung, K.6
-
29
-
-
43049089746
-
Molecular mechanism of drug-dependent ribosome stalling
-
Vazquez-Laslop N., Thum C., Mankin A.S. Molecular mechanism of drug-dependent ribosome stalling. Mol. Cell 2008, 30:190-202.
-
(2008)
Mol. Cell
, vol.30
, pp. 190-202
-
-
Vazquez-Laslop, N.1
Thum, C.2
Mankin, A.S.3
-
30
-
-
0024004922
-
Reading frame switch caused by base-pair formation between the 3' end of 16S rRNA and the mRNA during elongation of protein synthesis in Escherichia coli
-
Weiss R.B., Dunn D.M., Dahlberg A.E., Atkins J.F., Gesteland R.F. Reading frame switch caused by base-pair formation between the 3' end of 16S rRNA and the mRNA during elongation of protein synthesis in Escherichia coli. EMBO J. 1988, 7:1503-1507.
-
(1988)
EMBO J.
, vol.7
, pp. 1503-1507
-
-
Weiss, R.B.1
Dunn, D.M.2
Dahlberg, A.E.3
Atkins, J.F.4
Gesteland, R.F.5
-
31
-
-
41149155366
-
Following translation by single ribosomes one codon at a time
-
Wen J.D., Lancaster L., Hodges C., Zeri A.C., Yoshimura S.H., Noller H.F., Bustamante C., Tinoco I. Following translation by single ribosomes one codon at a time. Nature 2008, 452:598-603.
-
(2008)
Nature
, vol.452
, pp. 598-603
-
-
Wen, J.D.1
Lancaster, L.2
Hodges, C.3
Zeri, A.C.4
Yoshimura, S.H.5
Noller, H.F.6
Bustamante, C.7
Tinoco, I.8
-
32
-
-
70450233600
-
The A-of bacterial translation inhibitors
-
Wilson D.N. The A-of bacterial translation inhibitors. Crit. Rev. Biochem. Mol. Biol. 2009, 44:393-433.
-
(2009)
Crit. Rev. Biochem. Mol. Biol.
, vol.44
, pp. 393-433
-
-
Wilson, D.N.1
-
33
-
-
84874611913
-
Nascent peptides that block protein synthesis in bacteria
-
Woolstenhulme C.J., Parajuli S., Healey D.W., Valverde D.P., Petersen E.N., Starosta A.L., Guydosh N.R., Johnson W.E., Wilson D.N., Buskirk A.R. Nascent peptides that block protein synthesis in bacteria. Proc. Natl. Acad. Sci. USA 2013, 110:E878-E887.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. E878-E887
-
-
Woolstenhulme, C.J.1
Parajuli, S.2
Healey, D.W.3
Valverde, D.P.4
Petersen, E.N.5
Starosta, A.L.6
Guydosh, N.R.7
Johnson, W.E.8
Wilson, D.N.9
Buskirk, A.R.10
-
34
-
-
84927693301
-
High-precision analysis of translational pausing by ribosome profiling in bacteria lacking EFP
-
Woolstenhulme C.J., Guydosh N.R., Green R., Buskirk A.R. High-precision analysis of translational pausing by ribosome profiling in bacteria lacking EFP. Cell Rep. 2015, 11:13-21.
-
(2015)
Cell Rep.
, vol.11
, pp. 13-21
-
-
Woolstenhulme, C.J.1
Guydosh, N.R.2
Green, R.3
Buskirk, A.R.4
-
35
-
-
84923378894
-
Ribosome excursions during mRNA translocation mediate broad branching of frameshift pathways
-
Yan S., Wen J.D., Bustamante C., Tinoco I. Ribosome excursions during mRNA translocation mediate broad branching of frameshift pathways. Cell 2015, 160:870-881.
-
(2015)
Cell
, vol.160
, pp. 870-881
-
-
Yan, S.1
Wen, J.D.2
Bustamante, C.3
Tinoco, I.4
-
36
-
-
84939508757
-
Rli1/ABCE1 recycles terminating ribosomes and controls translation reinitiation in 3'UTRs in vivo
-
Young D.J., Guydosh N.R., Zhang F., Hinnebusch A.G., Green R. Rli1/ABCE1 recycles terminating ribosomes and controls translation reinitiation in 3'UTRs in vivo. Cell 2015, 162:872-884.
-
(2015)
Cell
, vol.162
, pp. 872-884
-
-
Young, D.J.1
Guydosh, N.R.2
Zhang, F.3
Hinnebusch, A.G.4
Green, R.5
-
37
-
-
79551690253
-
Folding at the birth of the nascent chain: coordinating translation with co-translational folding
-
Zhang G., Ignatova Z. Folding at the birth of the nascent chain: coordinating translation with co-translational folding. Curr. Opin. Struct. Biol. 2011, 21:25-31.
-
(2011)
Curr. Opin. Struct. Biol.
, vol.21
, pp. 25-31
-
-
Zhang, G.1
Ignatova, Z.2
|