메뉴 건너뛰기




Volumn 41, Issue D1, 2013, Pages

EcoGene 3.0

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; CYSTEINE; GLYCINE; THREONINE; TRANSFER RNA;

EID: 84875904855     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gks1235     Document Type: Article
Times cited : (161)

References (44)
  • 2
    • 0025047052 scopus 로고
    • An algorithm for searching restriction maps
    • Miller, W., Ostell, J. and Rudd, K.E. (1990) An algorithm for searching restriction maps. Comput. Appl. Biosci., 6, 247-252.
    • (1990) Comput. Appl. Biosci. , vol.6 , pp. 247-252
    • Miller, W.1    Ostell, J.2    Rudd, K.E.3
  • 3
    • 0023669069 scopus 로고
    • The physical map of the whole E. coli chromosome: Application of a new strategy for rapid analysis and sorting of a large genomic library
    • Kohara, Y., Akiyama, K. and Isono, K. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell, 50, 495-508.
    • (1987) Cell , vol.50 , pp. 495-508
    • Kohara, Y.1    Akiyama, K.2    Isono, K.3
  • 4
    • 0031696840 scopus 로고    scopus 로고
    • Linkage map of Escherichia coli K-12, edition 10: The physical map
    • Rudd, K.E. (1998) Linkage map of Escherichia coli K-12, edition 10: the physical map. Microbiol. Mol. Biol. Rev., 62, 985-1019.
    • (1998) Microbiol. Mol. Biol. Rev. , vol.62 , pp. 985-1019
    • Rudd, K.E.1
  • 5
    • 0027466453 scopus 로고
    • Significant dispersed recurrent DNA sequences in the Escherichia coli genome. Several new groups
    • Blaisdell, B.E., Rudd, K.E., Matin, A. and Karlin, S. (1993) Significant dispersed recurrent DNA sequences in the Escherichia coli genome. Several new groups. J. Mol. Biol., 229, 833-848.
    • (1993) J. Mol. Biol. , vol.229 , pp. 833-848
    • Blaisdell, B.E.1    Rudd, K.E.2    Matin, A.3    Karlin, S.4
  • 6
    • 0028004414 scopus 로고
    • Intrinsic and extrinsic approaches for detecting genes in a bacterial genome
    • Borodovsky, M., Rudd, K.E. and Koonin, E.V. (1994) Intrinsic and extrinsic approaches for detecting genes in a bacterial genome. Nucleic Acids Res., 22, 4756-4767.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4756-4767
    • Borodovsky, M.1    Rudd, K.E.2    Koonin, E.V.3
  • 8
    • 0033971754 scopus 로고    scopus 로고
    • EcoGene: A genome sequence database for Escherichia coli K-12
    • Rudd, K.E. (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res., 28, 60-64.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 60-64
    • Rudd, K.E.1
  • 15
    • 7744226739 scopus 로고    scopus 로고
    • Increased motility of Escherichia coli by insertion sequence element integration into the regulatory region of the flhD operon
    • Barker, C.S., Pruss, B.M. and Matsumura, P. (2004) Increased motility of Escherichia coli by insertion sequence element integration into the regulatory region of the flhD operon. J. Bacteriol., 186, 7529-7537.
    • (2004) J. Bacteriol. , vol.186 , pp. 7529-7537
    • Barker, C.S.1    Pruss, B.M.2    Matsumura, P.3
  • 17
    • 84855878005 scopus 로고    scopus 로고
    • Newly identified genetic variations in common Escherichia coli MG1655 stock cultures
    • Freddolino, P.L., Amini, S. and Tavazoie, S. (2012) Newly identified genetic variations in common Escherichia coli MG1655 stock cultures. J. Bacteriol., 194, 303-306.
    • (2012) J. Bacteriol. , vol.194 , pp. 303-306
    • Freddolino, P.L.1    Amini, S.2    Tavazoie, S.3
  • 18
    • 79959400835 scopus 로고    scopus 로고
    • Genotype and phenotypes of an intestine-adapted Escherichia coli K-12 mutant selected by animal passage for superior colonization
    • Fabich, A.J., Leatham, M.P., Grissom, J.E., Wiley, G., Lai, H., Najar, F., Roe, B.A., Cohen, P.S. and Conway, T. (2011) Genotype and phenotypes of an intestine-adapted Escherichia coli K-12 mutant selected by animal passage for superior colonization. Infect. Immun., 79, 2430-2439.
    • (2011) Infect. Immun. , vol.79 , pp. 2430-2439
    • Fabich, A.J.1    Leatham, M.P.2    Grissom, J.E.3    Wiley, G.4    Lai, H.5    Najar, F.6    Roe, B.A.7    Cohen, P.S.8    Conway, T.9
  • 19
    • 40149095640 scopus 로고    scopus 로고
    • The impact of horizontal gene transfer in shaping operons and protein interaction networks - Direct evidence of preferential attachment
    • Davids, W. and Zhang, Z. (2008) The impact of horizontal gene transfer in shaping operons and protein interaction networks - direct evidence of preferential attachment. BMC Evol. Biol., 8, 23.
    • (2008) BMC Evol. Biol. , vol.8 , pp. 23
    • Davids, W.1    Zhang, Z.2
  • 20
    • 75549086595 scopus 로고    scopus 로고
    • REBASE - A database for DNA restriction and modification: Enzymes, genes and genomes
    • Roberts, R.J., Vincze, T., Posfai, J. and Macelis, D. (2010) REBASE - a database for DNA restriction and modification: enzymes, genes and genomes. Nucleic Acids Res., 38, D234-D236.
    • (2010) Nucleic Acids Res. , vol.38
    • Roberts, R.J.1    Vincze, T.2    Posfai, J.3    Macelis, D.4
  • 22
    • 80052916373 scopus 로고    scopus 로고
    • Bacterial genome reengineering
    • Zhou, J. and Rudd, K.E. (2011) Bacterial genome reengineering. Methods Mol. Biol., 765, 3-25.
    • (2011) Methods Mol. Biol. , vol.765 , pp. 3-25
    • Zhou, J.1    Rudd, K.E.2
  • 23
    • 0033386645 scopus 로고    scopus 로고
    • Novel intergenic repeats of Escherichia coli K-12
    • Rudd, K.E. (1999) Novel intergenic repeats of Escherichia coli K-12. Res. Microbiol., 150, 653-664.
    • (1999) Res. Microbiol. , vol.150 , pp. 653-664
    • Rudd, K.E.1
  • 26
    • 67650079601 scopus 로고    scopus 로고
    • What we can learn about Escherichia coli through application of Gene Ontology
    • Hu, J.C., Karp, P.D., Keseler, I.M., Krummenacker, M. and Siegele, D.A. (2009) What we can learn about Escherichia coli through application of Gene Ontology. Trends Microbiol., 17, 269-278.
    • (2009) Trends Microbiol. , vol.17 , pp. 269-278
    • Hu, J.C.1    Karp, P.D.2    Keseler, I.M.3    Krummenacker, M.4    Siegele, D.A.5
  • 31
    • 84859436530 scopus 로고    scopus 로고
    • NCBI Reference Sequences (RefSeq): Current status, new features and genome annotation policy
    • Pruitt, K.D., Tatusova, T., Brown, G.R. and Maglott, D.R. (2012) NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy. Nucleic Acids Res., 40, D130-D135.
    • (2012) Nucleic Acids Res. , vol.40
    • Pruitt, K.D.1    Tatusova, T.2    Brown, G.R.3    Maglott, D.R.4
  • 32
    • 2942566270 scopus 로고    scopus 로고
    • Fine-tuning the prediction of sequences cleaved by signal peptidase II: A curated set of proven and predicted lipoproteins of Escherichia coli K-12
    • Gonnet, P., Rudd, K.E. and Lisacek, F. (2004) Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12. Proteomics, 4, 1597-1613.
    • (2004) Proteomics , vol.4 , pp. 1597-1613
    • Gonnet, P.1    Rudd, K.E.2    Lisacek, F.3
  • 33
    • 61349152435 scopus 로고    scopus 로고
    • Hda monomerization by ADP binding promotes replicase clamp-mediated DnaA-ATP hydrolysis
    • Su'etsugu, M., Nakamura, K., Keyamura, K., Kudo, Y. and Katayama, T. (2008) Hda monomerization by ADP binding promotes replicase clamp-mediated DnaA-ATP hydrolysis. J. Biol. Chem., 283, 36118-36131.
    • (2008) J. Biol. Chem. , vol.283 , pp. 36118-36131
    • Su'etsugu, M.1    Nakamura, K.2    Keyamura, K.3    Kudo, Y.4    Katayama, T.5
  • 34
    • 0031918278 scopus 로고    scopus 로고
    • Low molecular weight proteins: A challenge for post-genomic research
    • Rudd, K.E., Humphery-Smith, I., Wasinger, V.C. and Bairoch, A. (1998) Low molecular weight proteins: a challenge for post-genomic research. Electrophoresis, 19, 536-544.
    • (1998) Electrophoresis , vol.19 , pp. 536-544
    • Rudd, K.E.1    Humphery-Smith, I.2    Wasinger, V.C.3    Bairoch, A.4
  • 35
    • 73849144298 scopus 로고    scopus 로고
    • Small stress response proteins in Escherichia coli: Proteins missed by classical proteomic studies
    • Hemm, M.R., Paul, B.J., Miranda-Rios, J., Zhang, A., Soltanzad, N. and Storz, G. (2010) Small stress response proteins in Escherichia coli: proteins missed by classical proteomic studies. J. Bacteriol., 192, 46-58.
    • (2010) J. Bacteriol. , vol.192 , pp. 46-58
    • Hemm, M.R.1    Paul, B.J.2    Miranda-Rios, J.3    Zhang, A.4    Soltanzad, N.5    Storz, G.6
  • 36
    • 56749151013 scopus 로고    scopus 로고
    • Small membrane proteins found by comparative genomics and ribosome binding site models
    • Hemm, M.R., Paul, B.J., Schneider, T.D., Storz, G. and Rudd, K.E. (2008) Small membrane proteins found by comparative genomics and ribosome binding site models. Mol. Microbiol., 70, 1487-1501.
    • (2008) Mol. Microbiol. , vol.70 , pp. 1487-1501
    • Hemm, M.R.1    Paul, B.J.2    Schneider, T.D.3    Storz, G.4    Rudd, K.E.5
  • 38
    • 79953223716 scopus 로고    scopus 로고
    • COMBREX: Computational bridge to experiments
    • Roberts, R.J. (2011) COMBREX: COMputational BRidge to EXperiments. Biochem. Soc. Trans., 39, 581-583.
    • (2011) Biochem. Soc. Trans. , vol.39 , pp. 581-583
    • Roberts, R.J.1
  • 40
    • 84855258750 scopus 로고    scopus 로고
    • YhiQ is RsmJ, the methyltransferase responsible for methylation of G1516 in 16S rRNA of E. coli
    • Basturea, G.N., Dague, D.R., Deutscher, M.P. and Rudd, K.E. (2012) YhiQ is RsmJ, the methyltransferase responsible for methylation of G1516 in 16S rRNA of E. coli. J. Mol. Biol., 415, 16-21.
    • (2012) J. Mol. Biol. , vol.415 , pp. 16-21
    • Basturea, G.N.1    Dague, D.R.2    Deutscher, M.P.3    Rudd, K.E.4
  • 43
    • 80052058768 scopus 로고    scopus 로고
    • IS5 inserts upstream of the master motility operon flhDC in a quasi-Lamarckian way
    • Wang, X. and Wood, T.K. (2011) IS5 inserts upstream of the master motility operon flhDC in a quasi-Lamarckian way. ISME J., 5, 1517-1525.
    • (2011) ISME J. , vol.5 , pp. 1517-1525
    • Wang, X.1    Wood, T.K.2
  • 44
    • 33646568438 scopus 로고    scopus 로고
    • Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): Unique resources for biological research
    • Kitagawa, M., Ara, T., Arifuzzaman, M., Ioka-Nakamichi, T., Inamoto, E., Toyonaga, H. and Mori, H. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res., 12, 291-299.
    • (2005) DNA Res. , vol.12 , pp. 291-299
    • Kitagawa, M.1    Ara, T.2    Arifuzzaman, M.3    Ioka-Nakamichi, T.4    Inamoto, E.5    Toyonaga, H.6    Mori, H.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.