-
1
-
-
79955619140
-
The architecture and conservation pattern of whole-cell control circuitry
-
McAdams HH, Shapiro L, (2011) The architecture and conservation pattern of whole-cell control circuitry. J Mol Biol 409: 28-35.
-
(2011)
J Mol Biol
, vol.409
, pp. 28-35
-
-
McAdams, H.H.1
Shapiro, L.2
-
3
-
-
0035957330
-
Complete genome sequence of Caulobacter crescentus
-
Nierman WC, Feldblyum TV, Laub MT, Paulsen IT, Nelson KE, et al. (2001) Complete genome sequence of Caulobacter crescentus. Proc Natl Acad Sci U S A 98: 4136-4141.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 4136-4141
-
-
Nierman, W.C.1
Feldblyum, T.V.2
Laub, M.T.3
Paulsen, I.T.4
Nelson, K.E.5
-
4
-
-
41749103319
-
Small non-coding RNAs in Caulobacter crescentus
-
Landt SG, Abeliuk E, McGrath PT, Lesley JA, McAdams HH, et al. (2008) Small non-coding RNAs in Caulobacter crescentus. Mol Microbiol 68: 600-614.
-
(2008)
Mol Microbiol
, vol.68
, pp. 600-614
-
-
Landt, S.G.1
Abeliuk, E.2
McGrath, P.T.3
Lesley, J.A.4
McAdams, H.H.5
-
5
-
-
34249708917
-
High-throughput identification of transcription start sites, conserved promoter motifs and predicted regulons
-
McGrath PT, Lee H, Zhang L, Iniesta AA, Hottes AK, et al. (2007) High-throughput identification of transcription start sites, conserved promoter motifs and predicted regulons. Nat Biotechnol 25: 584-592.
-
(2007)
Nat Biotechnol
, vol.25
, pp. 584-592
-
-
McGrath, P.T.1
Lee, H.2
Zhang, L.3
Iniesta, A.A.4
Hottes, A.K.5
-
6
-
-
57749195712
-
RNA-Seq: a revolutionary tool for transcriptomics
-
Wang Z, Gerstein M, Snyder M, (2009) RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet 10: 57-63.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 57-63
-
-
Wang, Z.1
Gerstein, M.2
Snyder, M.3
-
7
-
-
79954478407
-
Regulatory response to carbon starvation in Caulobacter crescentus
-
Britos L, Abeliuk E, Taverner T, Lipton M, McAdams H, et al. (2011) Regulatory response to carbon starvation in Caulobacter crescentus. PLoS One 6: e18179.
-
(2011)
PLoS One
, vol.6
-
-
Britos, L.1
Abeliuk, E.2
Taverner, T.3
Lipton, M.4
McAdams, H.5
-
8
-
-
62549134121
-
Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling
-
Ingolia NT, Ghaemmaghami S, Newman JRS, Weissman JS, (2009) Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling. Science 324: 218-223.
-
(2009)
Science
, vol.324
, pp. 218-223
-
-
Ingolia, N.T.1
Ghaemmaghami, S.2
Newman, J.R.S.3
Weissman, J.S.4
-
9
-
-
84866267681
-
Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution
-
Lee S, Liu B, Huang SX, Shen B, Qian SB, (2012) Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution. Proc Natl Acad Sci U S A 109: E2424-2432.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
-
-
Lee, S.1
Liu, B.2
Huang, S.X.3
Shen, B.4
Qian, S.B.5
-
10
-
-
84860231100
-
The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria
-
Li G-W, Oh E, Weissman JS, (2012) The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria. Nature 484: 538-541.
-
(2012)
Nature
, vol.484
, pp. 538-541
-
-
Li, G.-W.1
Oh, E.2
Weissman, J.S.3
-
11
-
-
84880372200
-
High-resolution view of bacteriophage lambda gene expression by ribosome profiling
-
Liu X, Jiang H, Gu Z, Roberts JW, (2013) High-resolution view of bacteriophage lambda gene expression by ribosome profiling. Proc Natl Acad Sci U S A 110: 11928-11933.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 11928-11933
-
-
Liu, X.1
Jiang, H.2
Gu, Z.3
Roberts, J.W.4
-
12
-
-
84890446345
-
A serine sensor for multicellularity in a bacterium
-
Subramaniam AR, Deloughery A, Bradshaw N, Chen Y, O'Shea E, et al. (2013) A serine sensor for multicellularity in a bacterium. eLife 2: e01501.
-
(2013)
ELife
, vol.2
-
-
Subramaniam, A.R.1
Deloughery, A.2
Bradshaw, N.3
Chen, Y.4
O'Shea, E.5
-
13
-
-
0036786891
-
Correlations between Shine-Dalgarno sequences and gene features such as predicted expression levels and operon structures
-
Ma J, Campbell A, Karlin S, (2002) Correlations between Shine-Dalgarno sequences and gene features such as predicted expression levels and operon structures. J Bacteriol 184: 5733-5745.
-
(2002)
J Bacteriol
, vol.184
, pp. 5733-5745
-
-
Ma, J.1
Campbell, A.2
Karlin, S.3
-
14
-
-
77950911751
-
Dynamic evolution of translation initiation mechanisms in prokaryotes
-
Nakagawa S, Niimura Y, Miura K-i, Gojobori T, (2010) Dynamic evolution of translation initiation mechanisms in prokaryotes. Proc Natl Acad Sci U S A 107: 6382-6387.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 6382-6387
-
-
Nakagawa, S.1
Niimura, Y.2
Miura, K.-I.3
Gojobori, T.4
-
15
-
-
33646263111
-
Analysis of SD sequences in completed microbial genomes: non-SD-led genes are as common as SD-led genes
-
Chang B, Halgamuge S, Tang S-L, (2006) Analysis of SD sequences in completed microbial genomes: non-SD-led genes are as common as SD-led genes. Gene 373: 90-99.
-
(2006)
Gene
, vol.373
, pp. 90-99
-
-
Chang, B.1
Halgamuge, S.2
Tang, S.-L.3
-
16
-
-
33646916591
-
Predicting Shine-Dalgarno sequence locations exposes genome annotation errors
-
Starmer J, Stomp A, Vouk M, Bitzer D, (2006) Predicting Shine-Dalgarno sequence locations exposes genome annotation errors. PLoS Comput Biol 2: e57.
-
(2006)
PLoS Comput Biol
, vol.2
-
-
Starmer, J.1
Stomp, A.2
Vouk, M.3
Bitzer, D.4
-
17
-
-
83255164895
-
Selective ribosome profiling reveals the cotranslational chaperone action of trigger factor in vivo
-
Oh E, Becker AH, Sandikci A, Huber D, Chaba R, et al. (2011) Selective ribosome profiling reveals the cotranslational chaperone action of trigger factor in vivo. Cell 147: 1295-1308.
-
(2011)
Cell
, vol.147
, pp. 1295-1308
-
-
Oh, E.1
Becker, A.H.2
Sandikci, A.3
Huber, D.4
Chaba, R.5
-
18
-
-
1342325451
-
Transcriptional profiling of Caulobacter crescentus during growth on complex and minimal media
-
Hottes AK, Meewan M, Yang D, Arana N, Romero P, et al. (2004) Transcriptional profiling of Caulobacter crescentus during growth on complex and minimal media. J Bacteriol 186: 1448-1461.
-
(2004)
J Bacteriol
, vol.186
, pp. 1448-1461
-
-
Hottes, A.K.1
Meewan, M.2
Yang, D.3
Arana, N.4
Romero, P.5
-
19
-
-
5344269437
-
Sculpting the proteome with AAA(+) proteases and disassembly machines
-
Sauer RT, Bolon DN, Burton BM, Burton RE, Flynn JM, et al. (2004) Sculpting the proteome with AAA(+) proteases and disassembly machines. Cell 119: 9-18.
-
(2004)
Cell
, vol.119
, pp. 9-18
-
-
Sauer, R.T.1
Bolon, D.N.2
Burton, B.M.3
Burton, R.E.4
Flynn, J.M.5
-
20
-
-
79959677792
-
A DNA damage checkpoint in Caulobacter crescentus inhibits cell division through a direct interaction with FtsW
-
Modell JW, Hopkins AC, Laub MT, (2011) A DNA damage checkpoint in Caulobacter crescentus inhibits cell division through a direct interaction with FtsW. Genes Dev 25: 1328-1343.
-
(2011)
Genes Dev
, vol.25
, pp. 1328-1343
-
-
Modell, J.W.1
Hopkins, A.C.2
Laub, M.T.3
-
21
-
-
33845870386
-
Regulation of the bacterial cell cycle by an integrated genetic circuit
-
Biondi EG, Reisinger SJ, Skerker JM, Arif M, Perchuk BS, et al. (2006) Regulation of the bacterial cell cycle by an integrated genetic circuit. Nature 444: 899-904.
-
(2006)
Nature
, vol.444
, pp. 899-904
-
-
Biondi, E.G.1
Reisinger, S.J.2
Skerker, J.M.3
Arif, M.4
Perchuk, B.S.5
-
22
-
-
80052415909
-
The essential genome of a bacterium
-
Christen B, Abeliuk E, Collier JM, Kalogeraki VS, Passarelli B, et al. (2011) The essential genome of a bacterium. Mol Syst Biol 7: 528.
-
(2011)
Mol Syst Biol
, vol.7
, pp. 528
-
-
Christen, B.1
Abeliuk, E.2
Collier, J.M.3
Kalogeraki, V.S.4
Passarelli, B.5
-
23
-
-
0030938645
-
Identification, characterization, and chromosomal organization of cell division cycle genes in Caulobacter crescentus
-
Ohta N, Ninfa AJ, Allaire A, Kulick L, Newton A, (1997) Identification, characterization, and chromosomal organization of cell division cycle genes in Caulobacter crescentus. J Bacteriol 179: 2169-2180.
-
(1997)
J Bacteriol
, vol.179
, pp. 2169-2180
-
-
Ohta, N.1
Ninfa, A.J.2
Allaire, A.3
Kulick, L.4
Newton, A.5
-
24
-
-
4744340613
-
Cell cycle-dependent abundance, stability and localization of FtsA and FtsQ in Caulobacter crescentus
-
Martin ME, Trimble MJ, Brun YV, (2004) Cell cycle-dependent abundance, stability and localization of FtsA and FtsQ in Caulobacter crescentus. Mol Microbiol 54: 60-74.
-
(2004)
Mol Microbiol
, vol.54
, pp. 60-74
-
-
Martin, M.E.1
Trimble, M.J.2
Brun, Y.V.3
-
25
-
-
79958782165
-
Assembly of the Caulobacter cell division machine
-
Goley ED, Yeh YC, Hong SH, Fero MJ, Abeliuk E, et al. (2011) Assembly of the Caulobacter cell division machine. Mol Microbiol 80: 1680-1698.
-
(2011)
Mol Microbiol
, vol.80
, pp. 1680-1698
-
-
Goley, E.D.1
Yeh, Y.C.2
Hong, S.H.3
Fero, M.J.4
Abeliuk, E.5
-
26
-
-
0019426060
-
Attenuation in the control of expression of bacterial operons
-
Yanofsky C, (1981) Attenuation in the control of expression of bacterial operons. Nature 289: 751-758.
-
(1981)
Nature
, vol.289
, pp. 751-758
-
-
Yanofsky, C.1
-
27
-
-
79959847578
-
Local absence of secondary structure permits translation of mRNAs that lack ribosome-binding sites
-
Scharff LB, Childs L, Walther D, Bock R, (2011) Local absence of secondary structure permits translation of mRNAs that lack ribosome-binding sites. PLoS Genet 7: e1002155.
-
(2011)
PLoS Genet
, vol.7
-
-
Scharff, L.B.1
Childs, L.2
Walther, D.3
Bock, R.4
-
28
-
-
0034254538
-
Selective stimulation of translation of leaderless mRNA by initiation factor 2: evolutionary implications for translation
-
Grill S, Gualerzi CO, Londei P, Blasi U, (2000) Selective stimulation of translation of leaderless mRNA by initiation factor 2: evolutionary implications for translation. EMBO J 19: 4101-4110.
-
(2000)
EMBO J
, vol.19
, pp. 4101-4110
-
-
Grill, S.1
Gualerzi, C.O.2
Londei, P.3
Blasi, U.4
-
29
-
-
84860742976
-
The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium
-
Kroger C, Dillon SC, Cameron AD, Papenfort K, Sivasankaran SK, et al. (2012) The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium. Proc Natl Acad Sci U S A 109: E1277-1286.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
-
-
Kroger, C.1
Dillon, S.C.2
Cameron, A.D.3
Papenfort, K.4
Sivasankaran, S.K.5
-
30
-
-
84860715141
-
Comparative transcriptomics of pathogenic and non-pathogenic Listeria species
-
Wurtzel O, Sesto N, Mellin JR, Karunker I, Edelheit S, et al. (2012) Comparative transcriptomics of pathogenic and non-pathogenic Listeria species. Mol Syst Biol 8: 583.
-
(2012)
Mol Syst Biol
, vol.8
, pp. 583
-
-
Wurtzel, O.1
Sesto, N.2
Mellin, J.R.3
Karunker, I.4
Edelheit, S.5
-
31
-
-
77949425194
-
The primary transcriptome of the major human pathogen Helicobacter pylori
-
Sharma CM, Hoffmann S, Darfeuille F, Reignier J, Findeiss S, et al. (2010) The primary transcriptome of the major human pathogen Helicobacter pylori. Nature 464: 250-255.
-
(2010)
Nature
, vol.464
, pp. 250-255
-
-
Sharma, C.M.1
Hoffmann, S.2
Darfeuille, F.3
Reignier, J.4
Findeiss, S.5
-
32
-
-
0030923760
-
Translation of the leaderless Caulobacter dnaX mRNA
-
Winzeler E, Shapiro L, (1997) Translation of the leaderless Caulobacter dnaX mRNA. J Bacteriol 179: 3981-3988.
-
(1997)
J Bacteriol
, vol.179
, pp. 3981-3988
-
-
Winzeler, E.1
Shapiro, L.2
-
33
-
-
84874624264
-
Global mapping of transcription start sites and promoter motifs in the symbiotic alpha-proteobacterium Sinorhizobium meliloti 1021
-
Schluter JP, Reinkensmeier J, Barnett MJ, Lang C, Krol E, et al. (2013) Global mapping of transcription start sites and promoter motifs in the symbiotic alpha-proteobacterium Sinorhizobium meliloti 1021. BMC Genomics 14: 156.
-
(2013)
BMC Genomics
, vol.14
, pp. 156
-
-
Schluter, J.P.1
Reinkensmeier, J.2
Barnett, M.J.3
Lang, C.4
Krol, E.5
-
34
-
-
67649414442
-
Correct timing of dnaA transcription and initiation of DNA replication requires trans translation
-
Cheng L, Keiler KC, (2009) Correct timing of dnaA transcription and initiation of DNA replication requires trans translation. J Bacteriol 191: 4268-4275.
-
(2009)
J Bacteriol
, vol.191
, pp. 4268-4275
-
-
Cheng, L.1
Keiler, K.C.2
-
35
-
-
78651323093
-
Rfam: Wikipedia, clans and the "decimal" release
-
Gardner PP, Daub J, Tate J, Moore BL, Osuch IH, et al. (2011) Rfam: Wikipedia, clans and the "decimal" release. Nucleic Acids Res 39: D141-145.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Gardner, P.P.1
Daub, J.2
Tate, J.3
Moore, B.L.4
Osuch, I.H.5
-
36
-
-
0028799987
-
Principal sigma subunit of the Caulobacter crescentus RNA polymerase
-
Malakooti J, Ely B, (1995) Principal sigma subunit of the Caulobacter crescentus RNA polymerase. J Bacteriol 177: 6854-6860.
-
(1995)
J Bacteriol
, vol.177
, pp. 6854-6860
-
-
Malakooti, J.1
Ely, B.2
-
37
-
-
84867577054
-
An atlas of Hfq-bound transcripts reveals 3′ UTRs as a genomic reservoir of regulatory small RNAs
-
Chao Y, Papenfort K, Reinhardt R, Sharma CM, Vogel J, (2012) An atlas of Hfq-bound transcripts reveals 3′ UTRs as a genomic reservoir of regulatory small RNAs. EMBO J 31: 4005-4019.
-
(2012)
EMBO J
, vol.31
, pp. 4005-4019
-
-
Chao, Y.1
Papenfort, K.2
Reinhardt, R.3
Sharma, C.M.4
Vogel, J.5
-
38
-
-
0034600835
-
Identification and cell cycle control of a novel pilus system in Caulobacter crescentus
-
Skerker JM, Shapiro L, (2000) Identification and cell cycle control of a novel pilus system in Caulobacter crescentus. EMBO J 19: 3223-3234.
-
(2000)
EMBO J
, vol.19
, pp. 3223-3234
-
-
Skerker, J.M.1
Shapiro, L.2
-
39
-
-
70849119931
-
Transcriptome complexity in a genome-reduced bacterium
-
Guell M, van Noort V, Yus E, Chen WH, Leigh-Bell J, et al. (2009) Transcriptome complexity in a genome-reduced bacterium. Science 326: 1268-1271.
-
(2009)
Science
, vol.326
, pp. 1268-1271
-
-
Guell, M.1
van Noort, V.2
Yus, E.3
Chen, W.H.4
Leigh-Bell, J.5
-
40
-
-
0034612277
-
Operons in Escherichia coli: genomic analyses and predictions
-
Salgado H, Moreno-Hagelsieb G, Smith TF, Collado-Vides J, (2000) Operons in Escherichia coli: genomic analyses and predictions. Proc Natl Acad Sci U S A 97: 6652-6657.
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
, pp. 6652-6657
-
-
Salgado, H.1
Moreno-Hagelsieb, G.2
Smith, T.F.3
Collado-Vides, J.4
-
41
-
-
0028206227
-
Regulation of Caulobacter crescentus ilvBN gene expression
-
Tarleton JC, Malakooti J, Ely B, (1994) Regulation of Caulobacter crescentus ilvBN gene expression. J Bacteriol 176: 3765-3774.
-
(1994)
J Bacteriol
, vol.176
, pp. 3765-3774
-
-
Tarleton, J.C.1
Malakooti, J.2
Ely, B.3
-
42
-
-
79954623270
-
An expanding universe of small proteins
-
Hobbs EC, Fontaine F, Yin X, Storz G, (2011) An expanding universe of small proteins. Curr Opin Microbiol 14: 167-173.
-
(2011)
Curr Opin Microbiol
, vol.14
, pp. 167-173
-
-
Hobbs, E.C.1
Fontaine, F.2
Yin, X.3
Storz, G.4
-
43
-
-
77954786287
-
Small peptides switch the transcriptional activity of Shavenbaby during Drosophila embryogenesis
-
Kondo T, Plaza S, Zanet J, Benrabah E, Valenti P, et al. (2010) Small peptides switch the transcriptional activity of Shavenbaby during Drosophila embryogenesis. Science 329: 336-339.
-
(2010)
Science
, vol.329
, pp. 336-339
-
-
Kondo, T.1
Plaza, S.2
Zanet, J.3
Benrabah, E.4
Valenti, P.5
-
44
-
-
77956542074
-
CrfA, a small noncoding RNA regulator of adaptation to carbon starvation in Caulobacter crescentus
-
Landt SG, Lesley JA, Britos L, Shapiro L, (2010) CrfA, a small noncoding RNA regulator of adaptation to carbon starvation in Caulobacter crescentus. J Bacteriol 192: 4763-4775.
-
(2010)
J Bacteriol
, vol.192
, pp. 4763-4775
-
-
Landt, S.G.1
Lesley, J.A.2
Britos, L.3
Shapiro, L.4
-
45
-
-
79960433506
-
Hfq and its constellation of RNA
-
Vogel J, Luisi BF, (2011) Hfq and its constellation of RNA. Nat Rev Microbiol 9: 578-589.
-
(2011)
Nat Rev Microbiol
, vol.9
, pp. 578-589
-
-
Vogel, J.1
Luisi, B.F.2
-
46
-
-
84863924309
-
Bacterial small RNA regulators: versatile roles and rapidly evolving variations
-
Gottesman S, Storz G, (2011) Bacterial small RNA regulators: versatile roles and rapidly evolving variations. Cold Spring Harb Perspect Biol 3: a003798.
-
(2011)
Cold Spring Harb Perspect Biol
, vol.3
-
-
Gottesman, S.1
Storz, G.2
-
47
-
-
33745210793
-
One single in-frame AUG codon is responsible for a diversity of subcellular localizations of glutaredoxin 2 in Saccharomyces cerevisiae
-
Porras P, Padilla CA, Krayl M, Voos W, Bárcena JA, (2006) One single in-frame AUG codon is responsible for a diversity of subcellular localizations of glutaredoxin 2 in Saccharomyces cerevisiae. J Biol Chem 281: 16551-16562.
-
(2006)
J Biol Chem
, vol.281
, pp. 16551-16562
-
-
Porras, P.1
Padilla, C.A.2
Krayl, M.3
Voos, W.4
Bárcena, J.A.5
-
48
-
-
0027420920
-
A 30-kDa alternative translation product of the CCAAT/enhancer binding protein alpha message: transcriptional activator lacking antimitotic activity
-
Lin FT, MacDougald OA, Diehl AM, Lane MD, (1993) A 30-kDa alternative translation product of the CCAAT/enhancer binding protein alpha message: transcriptional activator lacking antimitotic activity. Proc Natl Acad Sci U S A 90: 9606-9610.
-
(1993)
Proc Natl Acad Sci U S A
, vol.90
, pp. 9606-9610
-
-
Lin, F.T.1
MacDougald, O.A.2
Diehl, A.M.3
Lane, M.D.4
-
49
-
-
81055155799
-
Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes
-
Ingolia NT, Lareau LF, Weissman JS, (2011) Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes. Cell 147: 789-802.
-
(2011)
Cell
, vol.147
, pp. 789-802
-
-
Ingolia, N.T.1
Lareau, L.F.2
Weissman, J.S.3
-
50
-
-
77956281182
-
Structural and operational complexity of the Geobacter sulfurreducens genome
-
Qiu Y, Cho BK, Park YS, Lovley D, Palsson BO, et al. (2010) Structural and operational complexity of the Geobacter sulfurreducens genome. Genome Res 20: 1304-1311.
-
(2010)
Genome Res
, vol.20
, pp. 1304-1311
-
-
Qiu, Y.1
Cho, B.K.2
Park, Y.S.3
Lovley, D.4
Palsson, B.O.5
-
51
-
-
0011343769
-
How ribosomes select initiator regions in mRNA: base pair formation between the 3′terminus of 16S rRNA and the mRNA during initiation of protein synthesis in Escherichia coli
-
Steitz JA, Jakes K, (1975) How ribosomes select initiator regions in mRNA: base pair formation between the 3′terminus of 16S rRNA and the mRNA during initiation of protein synthesis in Escherichia coli. Proc Natl Acad Sci U S A 72: 4734-4738.
-
(1975)
Proc Natl Acad Sci U S A
, vol.72
, pp. 4734-4738
-
-
Steitz, J.A.1
Jakes, K.2
-
52
-
-
0023373136
-
Specialized ribosome system: preferential translation of a single mRNA species by a subpopulation of mutated ribosomes in Escherichia coli
-
Hui A, de Boer HA, (1987) Specialized ribosome system: preferential translation of a single mRNA species by a subpopulation of mutated ribosomes in Escherichia coli. Proc Natl Acad Sci U S A 84: 4762-4766.
-
(1987)
Proc Natl Acad Sci U S A
, vol.84
, pp. 4762-4766
-
-
Hui, A.1
de Boer, H.A.2
-
53
-
-
0028584414
-
Determination of the optimal aligned spacing between the Shine-Dalgarno sequence and the translation initiation codon of Escherichia coli mRNAs
-
Chen H, Bjerknes M, Kumar R, Jay E, (1994) Determination of the optimal aligned spacing between the Shine-Dalgarno sequence and the translation initiation codon of Escherichia coli mRNAs. Nucleic Acids Res 22: 4953-4957.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4953-4957
-
-
Chen, H.1
Bjerknes, M.2
Kumar, R.3
Jay, E.4
-
54
-
-
84862658718
-
Kinetic control of translation initiation in bacteria
-
Milon P, Rodnina MV, (2012) Kinetic control of translation initiation in bacteria. Crit Rev Biochem Mol Biol 47: 334-348.
-
(2012)
Crit Rev Biochem Mol Biol
, vol.47
, pp. 334-348
-
-
Milon, P.1
Rodnina, M.V.2
-
55
-
-
84878073111
-
Evidence for context-dependent complementarity of non-Shine-Dalgarno ribosome binding sites to Escherichia coli rRNA
-
Barendt PA, Shah NA, Barendt GA, Kothari PA, Sarkar CA, (2013) Evidence for context-dependent complementarity of non-Shine-Dalgarno ribosome binding sites to Escherichia coli rRNA. ACS Chem Biol 8: 958-966.
-
(2013)
ACS Chem Biol
, vol.8
, pp. 958-966
-
-
Barendt, P.A.1
Shah, N.A.2
Barendt, G.A.3
Kothari, P.A.4
Sarkar, C.A.5
-
56
-
-
84859226963
-
Broad-specificity mRNA-rRNA complementarity in efficient protein translation
-
Barendt PA, Shah NA, Barendt GA, Sarkar CA, (2012) Broad-specificity mRNA-rRNA complementarity in efficient protein translation. PLoS Genet 8: e1002598.
-
(2012)
PLoS Genet
, vol.8
-
-
Barendt, P.A.1
Shah, N.A.2
Barendt, G.A.3
Sarkar, C.A.4
-
57
-
-
1542275552
-
Evidence for the translation initiation of leaderless mRNAs by the intact 70 S ribosome without its dissociation into subunits in eubacteria
-
Udagawa T, Shimizu Y, Ueda T, (2004) Evidence for the translation initiation of leaderless mRNAs by the intact 70 S ribosome without its dissociation into subunits in eubacteria. J Biol Chem 279: 8539-8546.
-
(2004)
J Biol Chem
, vol.279
, pp. 8539-8546
-
-
Udagawa, T.1
Shimizu, Y.2
Ueda, T.3
-
58
-
-
0036889040
-
Leaderless mRNAs bind 70S ribosomes more strongly than 30S ribosomal subunits in Escherichia coli
-
O'Donnell SM, Janssen GR, (2002) Leaderless mRNAs bind 70S ribosomes more strongly than 30S ribosomal subunits in Escherichia coli. J Bacteriol 184: 6730-6733.
-
(2002)
J Bacteriol
, vol.184
, pp. 6730-6733
-
-
O'Donnell, S.M.1
Janssen, G.R.2
-
59
-
-
84888432432
-
Genome-wide Mapping of Transcriptional Start Sites Defines an Extensive Leaderless Transcriptome in Mycobacterium tuberculosis
-
Cortes T, Schubert Olga T, Rose G, Arnvig Kristine B, Comas I, et al. (2013) Genome-wide Mapping of Transcriptional Start Sites Defines an Extensive Leaderless Transcriptome in Mycobacterium tuberculosis. Cell Reports 5: 1121-31.
-
(2013)
Cell Reports
, vol.5
, pp. 1121-1131
-
-
Cortes, T.1
Schubert Olga, T.2
Rose, G.3
Arnvig Kristine, B.4
Comas, I.5
-
60
-
-
80053563668
-
Selective translation of leaderless mRNAs by specialized ribosomes generated by MazF in Escherichia coli
-
Vesper O, Amitai S, Belitsky M, Byrgazov K, Kaberdina AC, et al. (2011) Selective translation of leaderless mRNAs by specialized ribosomes generated by MazF in Escherichia coli. Cell 147: 147-157.
-
(2011)
Cell
, vol.147
, pp. 147-157
-
-
Vesper, O.1
Amitai, S.2
Belitsky, M.3
Byrgazov, K.4
Kaberdina, A.C.5
-
61
-
-
79960196885
-
Leaderless genes in bacteria: clue to the evolution of translation initiation mechanisms in prokaryotes
-
Zheng X, Hu GQ, She ZS, Zhu H, (2011) Leaderless genes in bacteria: clue to the evolution of translation initiation mechanisms in prokaryotes. BMC Genomics 12: 361.
-
(2011)
BMC Genomics
, vol.12
, pp. 361
-
-
Zheng, X.1
Hu, G.Q.2
She, Z.S.3
Zhu, H.4
-
62
-
-
0015952166
-
Purification and properties of initiation factor IF-3 from Caulobacter crescentus
-
Leffler S, Szer W, (1974) Purification and properties of initiation factor IF-3 from Caulobacter crescentus. J Biol Chem 249: 1458-1464.
-
(1974)
J Biol Chem
, vol.249
, pp. 1458-1464
-
-
Leffler, S.1
Szer, W.2
-
63
-
-
0016285523
-
Interaction of Escherichia coli 30S ribosomal subunits with MS2 phage RNA in the absence of initiation factors
-
Szer W, Leffler S, (1974) Interaction of Escherichia coli 30S ribosomal subunits with MS2 phage RNA in the absence of initiation factors. Proc Natl Acad Sci U S A 71: 3611-3615.
-
(1974)
Proc Natl Acad Sci U S A
, vol.71
, pp. 3611-3615
-
-
Szer, W.1
Leffler, S.2
-
64
-
-
0038179369
-
Selective charging of tRNA isoacceptors explains patterns of codon usage
-
Elf J, Nilsson D, Tenson T, Ehrenberg M, (2003) Selective charging of tRNA isoacceptors explains patterns of codon usage. Science 300: 1718-1722.
-
(2003)
Science
, vol.300
, pp. 1718-1722
-
-
Elf, J.1
Nilsson, D.2
Tenson, T.3
Ehrenberg, M.4
-
65
-
-
41149155366
-
Following translation by single ribosomes one codon at a time
-
Wen JD, Lancaster L, Hodges C, Zeri AC, Yoshimura SH, et al. (2008) Following translation by single ribosomes one codon at a time. Nature 452: 598-603.
-
(2008)
Nature
, vol.452
, pp. 598-603
-
-
Wen, J.D.1
Lancaster, L.2
Hodges, C.3
Zeri, A.C.4
Yoshimura, S.H.5
-
66
-
-
0029870925
-
Programmed translational frameshifting
-
Farabaugh PJ, (1996) Programmed translational frameshifting. Microbiol Rev 60: 103-134.
-
(1996)
Microbiol Rev
, vol.60
, pp. 103-134
-
-
Farabaugh, P.J.1
-
67
-
-
0024004922
-
Reading frame switch caused by base-pair formation between the 3′ end of 16S rRNA and the mRNA during elongation of protein synthesis in Escherichia coli
-
Weiss RB, Dunn DM, Dahlberg AE, Atkins JF, Gesteland RF, (1988) Reading frame switch caused by base-pair formation between the 3′ end of 16S rRNA and the mRNA during elongation of protein synthesis in Escherichia coli. EMBO J 7: 1503-1507.
-
(1988)
EMBO J
, vol.7
, pp. 1503-1507
-
-
Weiss, R.B.1
Dunn, D.M.2
Dahlberg, A.E.3
Atkins, J.F.4
Gesteland, R.F.5
-
68
-
-
62049083910
-
Transient ribosomal attenuation coordinates protein synthesis and co-translational folding
-
Zhang G, Hubalewska M, Ignatova Z, (2009) Transient ribosomal attenuation coordinates protein synthesis and co-translational folding. Nat Struct Mol Biol 16: 274-280.
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 274-280
-
-
Zhang, G.1
Hubalewska, M.2
Ignatova, Z.3
-
69
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead B, Trapnell C, Pop M, Salzberg SL, (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25.
-
(2009)
Genome Biol
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
70
-
-
84869806462
-
Decoding human cytomegalovirus
-
Stern-Ginossar N, Weisburd B, Michalski A, Le VT, Hein MY, et al. (2012) Decoding human cytomegalovirus. Science 338: 1088-1093.
-
(2012)
Science
, vol.338
, pp. 1088-1093
-
-
Stern-Ginossar, N.1
Weisburd, B.2
Michalski, A.3
Le, V.T.4
Hein, M.Y.5
-
72
-
-
82055164092
-
ViennaRNA package 2.0
-
Lorenz R, Bernhart SH, Zu Siederdissen CH, Tafer H, Flamm C, et al. (2011) ViennaRNA package 2.0. Algorithms Mol Biol 6: 26.
-
(2011)
Algorithms Mol Biol
, vol.6
, pp. 26
-
-
Lorenz, R.1
Bernhart, S.H.2
Zu Siederdissen, C.H.3
Tafer, H.4
Flamm, C.5
-
73
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B, (2008) Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Meth 5: 621-628.
-
(2008)
Nat Meth
, vol.5
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
74
-
-
84887403420
-
Oligomerization and higher-order assembly contribute to sub-cellular localization of a bacterial scaffold
-
Bowman GR, Perez AM, Ptacin JL, Ighodaro E, Folta-Stogniew E, et al. (2013) Oligomerization and higher-order assembly contribute to sub-cellular localization of a bacterial scaffold. Mol Microbiol 90: 776-795.
-
(2013)
Mol Microbiol
, vol.90
, pp. 776-795
-
-
Bowman, G.R.1
Perez, A.M.2
Ptacin, J.L.3
Ighodaro, E.4
Folta-Stogniew, E.5
-
75
-
-
79955024764
-
High-throughput, subpixel precision analysis of bacterial morphogenesis and intracellular spatio-temporal dynamics
-
Sliusarenko O, Heinritz J, Emonet T, Jacobs-Wagner C, (2011) High-throughput, subpixel precision analysis of bacterial morphogenesis and intracellular spatio-temporal dynamics. Mol Microbiol 80: 612-627.
-
(2011)
Mol Microbiol
, vol.80
, pp. 612-627
-
-
Sliusarenko, O.1
Heinritz, J.2
Emonet, T.3
Jacobs-Wagner, C.4
-
76
-
-
36749049715
-
A comprehensive set of plasmids for vanillate- and xylose-inducible gene expression in Caulobacter crescentus
-
Thanbichler M, Iniesta AA, Shapiro L, (2007) A comprehensive set of plasmids for vanillate- and xylose-inducible gene expression in Caulobacter crescentus. Nucleic Acids Res 35: e137.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Thanbichler, M.1
Iniesta, A.A.2
Shapiro, L.3
-
77
-
-
67849122320
-
MEME SUITE: tools for motif discovery and searching
-
Bailey TL, Boden M, Buske FA, Frith M, Grant CE, et al. (2009) MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res 37: W202-208.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Bailey, T.L.1
Boden, M.2
Buske, F.A.3
Frith, M.4
Grant, C.E.5
-
78
-
-
3242778565
-
Identification of the protease and the turnover signal responsible for cell cycle-dependent degradation of the Caulobacter FliF motor protein
-
Grunenfelder B, Tawfilis S, Gehrig S, M OS, Eglin D, et al. (2004) Identification of the protease and the turnover signal responsible for cell cycle-dependent degradation of the Caulobacter FliF motor protein. J Bacteriol 186: 4960-4971.
-
(2004)
J Bacteriol
, vol.186
, pp. 4960-4971
-
-
Grunenfelder, B.1
Tawfilis, S.2
Gehrig, S.M.O.S.3
Eglin, D.4
-
79
-
-
84906938903
-
ClpXP and ClpAP proteolytic activity on divisome substrates is differentially regulated following the Caulobacter asymmetric cell division
-
Williams B, Bhat N, Chien P, Shapiro L, (2014) ClpXP and ClpAP proteolytic activity on divisome substrates is differentially regulated following the Caulobacter asymmetric cell division. Mol Microbiol In Press.
-
(2014)
Mol Microbiol
-
-
Williams, B.1
Bhat, N.2
Chien, P.3
Shapiro, L.4
|