-
1
-
-
75149196287
-
The mechanism of eukaryotic translation initiation and principles of its regulation
-
Jackson, R. J., Hellen, C. U., and Pestova, T. V. (2010) The mechanism of eukaryotic translation initiation and principles of its regulation. Nat. Rev. Mol. Cell Biol. 11, 113-127
-
(2010)
Nat. Rev. Mol. Cell Biol.
, vol.11
, pp. 113-127
-
-
Jackson, R.J.1
Hellen, C.U.2
Pestova, T.V.3
-
2
-
-
0025745222
-
The ATP requirement for initiation of eukaryotic translation varies according to the mRNA species
-
Jackson, R. J. (1991) The ATP requirement for initiation of eukaryotic translation varies according to the mRNA species. Eur. J. Biochem. 200, 285-294
-
(1991)
Eur. J. Biochem.
, vol.200
, pp. 285-294
-
-
Jackson, R.J.1
-
3
-
-
84867897302
-
Tricks an IRES uses to enslave ribosomes
-
Thompson, S. R. (2012) Tricks an IRES uses to enslave ribosomes. Trends Microbiol. 20, 558-566
-
(2012)
Trends Microbiol.
, vol.20
, pp. 558-566
-
-
Thompson, S.R.1
-
4
-
-
0034307483
-
Internal ribosome initiation of translation and the control of cell death
-
Holcik, M., Sonenberg, N., and Korneluk, R. G. (2000) Internal ribosome initiation of translation and the control of cell death. Trends Genet. 16, 469-473
-
(2000)
Trends Genet.
, vol.16
, pp. 469-473
-
-
Holcik, M.1
Sonenberg, N.2
Korneluk, R.G.3
-
5
-
-
38849172516
-
Reprogramming of translation following cell stress allows IRES-mediated translation to predominate
-
Spriggs, K. A., Stoneley, M., Bushell, M., and Willis, A. E. (2008) Reprogramming of translation following cell stress allows IRES-mediated translation to predominate. Biol. Cell 100, 27-38
-
(2008)
Biol. Cell
, vol.100
, pp. 27-38
-
-
Spriggs, K.A.1
Stoneley, M.2
Bushell, M.3
Willis, A.E.4
-
6
-
-
78651468719
-
Cap-assisted internal initiation of translation of histone H4
-
Martin, F., Barends, S., Jaeger, S., Schaeffer, L., Prongidi-Fix, L., and Eriani, G. (2011) Cap-assisted internal initiation of translation of histone H4. Mol. Cell 41, 197-209
-
(2011)
Mol. Cell
, vol.41
, pp. 197-209
-
-
Martin, F.1
Barends, S.2
Jaeger, S.3
Schaeffer, L.4
Prongidi-Fix, L.5
Eriani, G.6
-
7
-
-
0025792297
-
Structural features in eukaryotic mRNAs that modulate the initiation of translation
-
Kozak, M. (1991) Structural features in eukaryotic mRNAs that modulate the initiation of translation. J. Biol. Chem. 266, 19867-19870
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 19867-19870
-
-
Kozak, M.1
-
8
-
-
0035890071
-
Physical evidence for distinct mechanisms of translational control by upstream open reading frames
-
Gaba, A., Wang, Z., Krishnamoorthy, T., Hinnebusch, A. G., and Sachs, M. S. (2001) Physical evidence for distinct mechanisms of translational control by upstream open reading frames. EMBO J. 20, 6453-6463
-
(2001)
EMBO J.
, vol.20
, pp. 6453-6463
-
-
Gaba, A.1
Wang, Z.2
Krishnamoorthy, T.3
Hinnebusch, A.G.4
Sachs, M.S.5
-
9
-
-
0023425901
-
Effects of intercistronic length on the efficiency of reinitiation by eucaryotic ribosomes
-
Kozak, M. (1987) Effects of intercistronic length on the efficiency of reinitiation by eucaryotic ribosomes. Mol. Cell. Biol. 7, 3438-3445
-
(1987)
Mol. Cell. Biol.
, vol.7
, pp. 3438-3445
-
-
Kozak, M.1
-
10
-
-
66149118241
-
Upstream open reading frames cause widespread reduction of protein expression and are polymorphic among humans
-
Calvo, S. E., Pagliarini, D. J., and Mootha, V. K. (2009) Upstream open reading frames cause widespread reduction of protein expression and are polymorphic among humans. Proc. Natl. Acad. Sci. U.S.A. 106, 7507-7512
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 7507-7512
-
-
Calvo, S.E.1
Pagliarini, D.J.2
Mootha, V.K.3
-
11
-
-
77954738647
-
Linking promoters to functional transcripts in small samples with nanocage and cagescan
-
Plessy, C., Bertin, N., Takahashi, H., Simone, R., Salimullah, M., Lassmann, T., Vitezic, M., Severin, J., Olivarius, S., Lazarevic, D., Hornig, N., Orlando, V., Bell, I., Gao, H., Dumais, J., Kapranov, P., Wang, H., Davis, C. A., Gingeras, T. R., Kawai, J., Daub, C. O., Hayashizaki, Y., Gustincich, S., and Carninci, P. (2010) Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan. Nat. Methods 7, 528-534
-
(2010)
Nat. Methods
, vol.7
, pp. 528-534
-
-
Plessy, C.1
Bertin, N.2
Takahashi, H.3
Simone, R.4
Salimullah, M.5
Lassmann, T.6
Vitezic, M.7
Severin, J.8
Olivarius, S.9
Lazarevic, D.10
Hornig, N.11
Orlando, V.12
Bell, I.13
Gao, H.14
Dumais, J.15
Kapranov, P.16
Wang, H.17
Davis, C.A.18
Gingeras, T.R.19
Kawai, J.20
Daub, C.O.21
Hayashizaki, Y.22
Gustincich, S.23
Carninci, P.24
more..
-
13
-
-
34249069609
-
Dissociation of eIF1 from the 40S ribosomal subunit is a key step in start codon selection in vivo
-
Cheung, Y. N., Maag, D., Mitchell, S. F., Fekete, C. A., Algire, M. A., Takacs, J. E., Shirokikh, N., Pestova, T., Lorsch, J. R., and Hinnebusch, A. G. (2007) Dissociation of eIF1 from the 40S ribosomal subunit is a key step in start codon selection in vivo. Genes Dev. 21, 1217-1230
-
(2007)
Genes Dev.
, vol.21
, pp. 1217-1230
-
-
Cheung, Y.N.1
Maag, D.2
Mitchell, S.F.3
Fekete, C.A.4
Algire, M.A.5
Takacs, J.E.6
Shirokikh, N.7
Pestova, T.8
Lorsch, J.R.9
Hinnebusch, A.G.10
-
14
-
-
33644779804
-
Specific functional interactions of nucleotides at key -3 and -4 positions flanking the initiation codon with components of the mammalian 48S translation initiation complex
-
Pisarev, A. V., Kolupaeva, V. G., Pisareva, V. P., Merrick, W. C., Hellen, C. U., and Pestova, T. V. (2006) Specific functional interactions of nucleotides at key -3 and -4 positions flanking the initiation codon with components of the mammalian 48S translation initiation complex. Genes Dev. 20, 624-636
-
(2006)
Genes Dev.
, vol.20
, pp. 624-636
-
-
Pisarev, A.V.1
Kolupaeva, V.G.2
Pisareva, V.P.3
Merrick, W.C.4
Hellen, C.U.5
Pestova, T.V.6
-
15
-
-
33947595152
-
N-and C-terminal residues of eIF1A have opposing effects on the fidelity of start codon selection
-
Fekete, C. A., Mitchell, S. F., Cherkasova, V. A., Applefield, D., Algire, M. A., Maag, D., Saini, A. K., Lorsch, J. R., and Hinnebusch, A. G. (2007) N-and C-terminal residues of eIF1A have opposing effects on the fidelity of start codon selection. EMBO J. 26, 1602-1614
-
(2007)
EMBO J.
, vol.26
, pp. 1602-1614
-
-
Fekete, C.A.1
Mitchell, S.F.2
Cherkasova, V.A.3
Applefield, D.4
Algire, M.A.5
Maag, D.6
Saini, A.K.7
Lorsch, J.R.8
Hinnebusch, A.G.9
-
16
-
-
27144510561
-
Translational regulation of GCN4 and the general amino acid control of yeast
-
Hinnebusch, A. G. (2005) Translational regulation of GCN4 and the general amino acid control of yeast. Annu. Rev. Microbiol. 59, 407-450
-
(2005)
Annu. Rev. Microbiol.
, vol.59
, pp. 407-450
-
-
Hinnebusch, A.G.1
-
17
-
-
62549134121
-
Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling
-
Ingolia, N. T., Ghaemmaghami, S., Newman, J. R., and Weissman, J. S. (2009) Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling. Science 324, 218-223
-
(2009)
Science
, vol.324
, pp. 218-223
-
-
Ingolia, N.T.1
Ghaemmaghami, S.2
Newman, J.R.3
Weissman, J.S.4
-
18
-
-
84862777192
-
The translational landscape of mTOR signalling steers cancer initiation and metastasis
-
Hsieh, A. C., Liu, Y., Edlind, M. P., Ingolia, N. T., Janes, M. R., Sher, A., Shi, E. Y., Stumpf, C. R., Christensen, C., Bonham, M. J., Wang, S., Ren, P., Martin, M., Jessen, K., Feldman, M. E., Weissman, J. S., Shokat, K. M., Rommel, C., and Ruggero, D. (2012) The translational landscape of mTOR signalling steers cancer initiation and metastasis. Nature 485, 55-61
-
(2012)
Nature
, vol.485
, pp. 55-61
-
-
Hsieh, A.C.1
Liu, Y.2
Edlind, M.P.3
Ingolia, N.T.4
Janes, M.R.5
Sher, A.6
Shi, E.Y.7
Stumpf, C.R.8
Christensen, C.9
Bonham, M.J.10
Wang, S.11
Ren, P.12
Martin, M.13
Jessen, K.14
Feldman, M.E.15
Weissman, J.S.16
Shokat, K.M.17
Rommel, C.18
Ruggero, D.19
-
19
-
-
84857253794
-
Primary role for endoplasmic reticulum-bound ribosomes in cellular translation identified by ribosome profiling
-
Reid, D. W., and Nicchitta, C. V. (2012) Primary role for endoplasmic reticulum-bound ribosomes in cellular translation identified by ribosome profiling. J. Biol. Chem. 287, 5518-5527
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 5518-5527
-
-
Reid, D.W.1
Nicchitta, C.V.2
-
20
-
-
77955644289
-
Mammalian microRNAs predominantly act to decrease target mRNA levels
-
Guo, H., Ingolia, N. T., Weissman, J. S., and Bartel, D. P. (2010) Mammalian microRNAs predominantly act to decrease target mRNA levels. Nature 466, 835-840
-
(2010)
Nature
, vol.466
, pp. 835-840
-
-
Guo, H.1
Ingolia, N.T.2
Weissman, J.S.3
Bartel, D.P.4
-
21
-
-
84868315457
-
Genome-wide search for novel human uORFs and N-terminal protein extensions using ribosomal footprinting
-
Fritsch, C., Herrmann, A., Nothnagel, M., Szafranski, K., Huse, K., Schumann, F., Schreiber, S., Platzer, M., Krawczak, M., Hampe, J., and Brosch, M. (2012) Genome-wide search for novel human uORFs and N-terminal protein extensions using ribosomal footprinting. Genome Res. 22, 2208-2218
-
(2012)
Genome Res.
, vol.22
, pp. 2208-2218
-
-
Fritsch, C.1
Herrmann, A.2
Nothnagel, M.3
Szafranski, K.4
Huse, K.5
Schumann, F.6
Schreiber, S.7
Platzer, M.8
Krawczak, M.9
Hampe, J.10
Brosch, M.11
-
22
-
-
81055155799
-
Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of Mammalian proteomes
-
Ingolia, N. T., Lareau, L. F., and Weissman, J. S. (2011) Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of Mammalian proteomes. Cell 147, 789-802
-
(2011)
Cell
, vol.147
, pp. 789-802
-
-
Ingolia, N.T.1
Lareau, L.F.2
Weissman, J.S.3
-
23
-
-
84862778053
-
Ribosome profiling shows that miR-430 reduces translation before causing mRNA decay in zebrafish
-
Bazzini, A. A., Lee, M. T., and Giraldez, A. J. (2012) Ribosome profiling shows that miR-430 reduces translation before causing mRNA decay in zebrafish. Science 336, 233-237
-
(2012)
Science
, vol.336
, pp. 233-237
-
-
Bazzini, A.A.1
Lee, M.T.2
Giraldez, A.J.3
-
24
-
-
84870527178
-
Contributions of mRNA abundance, ribosome loading, and post-or peri-translational effects to temporal repression of C. Elegans heterochronic miRNA targets
-
Stadler, M., Artiles, K., Pak, J., and Fire, A. (2012) Contributions of mRNA abundance, ribosome loading, and post-or peri-translational effects to temporal repression of C. elegans heterochronic miRNA targets. Genome Res. 22, 2418-2426
-
(2012)
Genome Res.
, vol.22
, pp. 2418-2426
-
-
Stadler, M.1
Artiles, K.2
Pak, J.3
Fire, A.4
-
25
-
-
84880946485
-
A rapid ribosome profiling method elucidates chloroplast ribosome behavior in vivo
-
Zoschke, R., Watkins, K. P., and Barkan, A. (2013) A rapid ribosome profiling method elucidates chloroplast ribosome behavior in vivo. Plant Cell 25, 2265-2275
-
(2013)
Plant Cell
, vol.25
, pp. 2265-2275
-
-
Zoschke, R.1
Watkins, K.P.2
Barkan, A.3
-
26
-
-
84888404338
-
Translational landscape of photomorphogenic arabidopsis
-
Liu, M. J., Wu, S. H., Wu, J. F., Lin, W. D., Wu, Y. C., Tsai, T. Y., and Tsai, H. L. (2013) Translational Landscape of Photomorphogenic Arabidopsis. Plant Cell 25, 3699-3710
-
(2013)
Plant Cell
, vol.25
, pp. 3699-3710
-
-
Liu, M.J.1
Wu, S.H.2
Wu, J.F.3
Lin, W.D.4
Wu, Y.C.5
Tsai, T.Y.6
Tsai, H.L.7
-
27
-
-
84856625798
-
High-resolution view of the yeast meiotic program revealed by ribosome profiling
-
Brar, G. A., Yassour, M., Friedman, N., Regev, A., Ingolia, N. T., and Weissman, J. S. (2012) High-resolution view of the yeast meiotic program revealed by ribosome profiling. Science 335, 552-557
-
(2012)
Science
, vol.335
, pp. 552-557
-
-
Brar, G.A.1
Yassour, M.2
Friedman, N.3
Regev, A.4
Ingolia, N.T.5
Weissman, J.S.6
-
28
-
-
84867919856
-
Genome-wide ribosome profiling reveals complex translational regulation in response to oxidative stress
-
Gerashchenko, M. V., Lobanov, A. V., and Gladyshev, V. N. (2012) Genome-wide ribosome profiling reveals complex translational regulation in response to oxidative stress. Proc. Natl. Acad. Sci. U.S.A. 109, 17394-17399
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 17394-17399
-
-
Gerashchenko, M.V.1
Lobanov, A.V.2
Gladyshev, V.N.3
-
29
-
-
83255164895
-
Selective ribosome profiling reveals the cotranslational chaperone action of trigger factor in vivo
-
Oh, E., Becker, A. H., Sandikci, A., Huber, D., Chaba, R., Gloge, F., Nichols, R. J., Typas, A., Gross, C. A., Kramer, G., Weissman, J. S., and Bukau, B. (2011) Selective ribosome profiling reveals the cotranslational chaperone action of trigger factor in vivo. Cell 147, 1295-1308
-
(2011)
Cell
, vol.147
, pp. 1295-1308
-
-
Oh, E.1
Becker, A.H.2
Sandikci, A.3
Huber, D.4
Chaba, R.5
Gloge, F.6
Nichols, R.J.7
Typas, A.8
Gross, C.A.9
Kramer, G.10
Weissman, J.S.11
Bukau, B.12
-
30
-
-
84860231100
-
The anti-shine-dalgarno sequence drives translational pausing and codon choice in bacteria
-
Li, G. W., Oh, E., and Weissman, J. S. (2012) The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria. Nature 484, 538-541
-
(2012)
Nature
, vol.484
, pp. 538-541
-
-
Li, G.W.1
Oh, E.2
Weissman, J.S.3
-
31
-
-
84869806462
-
Decoding human cytomegalovirus
-
Stern-Ginossar, N., Weisburd, B., Michalski, A., Le, V. T., Hein, M. Y., Huang, S. X., Ma, M., Shen, B., Qian, S. B., Hengel, H., Mann, M., Ingolia, N. T., and Weissman, J. S. (2012) Decoding human cytomegalovirus. Science 338, 1088-1093
-
(2012)
Science
, vol.338
, pp. 1088-1093
-
-
Stern-Ginossar, N.1
Weisburd, B.2
Michalski, A.3
Le, V.T.4
Hein, M.Y.5
Huang, S.X.6
Ma, M.7
Shen, B.8
Qian, S.B.9
Hengel, H.10
Mann, M.11
Ingolia, N.T.12
Weissman, J.S.13
-
32
-
-
84880372200
-
High-resolution view of bacteriophage lambda gene expression by ribosome profiling
-
Liu, X., Jiang, H., Gu, Z., and Roberts, J. W. (2013) High-resolution view of bacteriophage lambda gene expression by ribosome profiling. Proc. Natl. Acad. Sci. U.S.A. 110, 11928-11933
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 11928-11933
-
-
Liu, X.1
Jiang, H.2
Gu, Z.3
Roberts, J.W.4
-
33
-
-
84866267681
-
Global mapping of translation initiation sites in mammalian cells at singlenucleotide resolution
-
Lee, S., Liu, B., Huang, S. X., Shen, B., and Qian, S. B. (2012) Global mapping of translation initiation sites in mammalian cells at singlenucleotide resolution. Proc. Natl. Acad. Sci. U.S.A. 109, E2424-E2432
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 2424-2432
-
-
Lee, S.1
Liu, B.2
Huang, S.X.3
Shen, B.4
Qian, S.B.5
-
34
-
-
68949202210
-
Differential use of an in-frame translation initiation codon regulates human mu opioid receptor (OPRM1)
-
Song, K. Y., Choi, H. S., Hwang, C. K., Kim, C. S., Law, P. Y., Wei, L. N., and Loh, H. H. (2009) Differential use of an in-frame translation initiation codon regulates human mu opioid receptor (OPRM1). Cell. Mol. Life Sci. 66, 2933-2942
-
(2009)
Cell. Mol. Life Sci.
, vol.66
, pp. 2933-2942
-
-
Song, K.Y.1
Choi, H.S.2
Hwang, C.K.3
Kim, C.S.4
Law, P.Y.5
Wei, L.N.6
Loh, H.H.7
-
35
-
-
67650122080
-
Targeted mass spectrometric analysis of N-terminally truncated isoforms generated via alternative translation initiation
-
Kobayashi, R., Patenia, R., Ashizawa, S., and Vykoukal, J. (2009) Targeted mass spectrometric analysis of N-terminally truncated isoforms generated via alternative translation initiation. FEBS Lett. 583, 2441-2445
-
(2009)
FEBS Lett.
, vol.583
, pp. 2441-2445
-
-
Kobayashi, R.1
Patenia, R.2
Ashizawa, S.3
Vykoukal, J.4
-
36
-
-
79955716664
-
Localization of human rnase z isoforms: Dual nuclear/mitochondrial targeting of the elac2 gene product by alternative translation initiation
-
Rossmanith, W. (2011) Localization of human RNase Z isoforms: Dual nuclear/mitochondrial targeting of the ELAC2 gene product by alternative translation initiation. PLoS One 6, e19152
-
(2011)
PLoS One
, vol.6
-
-
Rossmanith, W.1
-
37
-
-
70350223815
-
Translation initiation from two in-frame AUGs generates mitochondrial and cytoplasmic forms of the p43 component of the multisynthetase complex
-
Shalak, V., Kaminska, M., and Mirande, M. (2009) Translation initiation from two in-frame AUGs generates mitochondrial and cytoplasmic forms of the p43 component of the multisynthetase complex. Biochemistry 48, 9959-9968
-
(2009)
Biochemistry
, vol.48
, pp. 9959-9968
-
-
Shalak, V.1
Kaminska, M.2
Mirande, M.3
-
38
-
-
84877654250
-
A cryptic targeting signal creates a mitochondrial fen1 isoform with tailed r-loop binding properties
-
Kazak, L., Reyes, A., He, J., Wood, S. R., Brea-Calvo, G., Holen, T. T., and Holt, I. J. (2013) A cryptic targeting signal creates a mitochondrial FEN1 isoform with tailed R-Loop binding properties. PLoS One 8, e62340
-
(2013)
PLoS One
, vol.8
-
-
Kazak, L.1
Reyes, A.2
He, J.3
Wood, S.R.4
Brea-Calvo, G.5
Holen, T.T.6
Holt, I.J.7
-
39
-
-
84876395971
-
Alternative translation initiation augments the human mitochondrial proteome
-
Kazak, L., Reyes, A., Duncan, A. L., Rorbach, J., Wood, S. R., Brea-Calvo, G., Gammage, P. A., Robinson, A. J., Minczuk, M., and Holt, I. J. (2013) Alternative translation initiation augments the human mitochondrial proteome. Nucleic Acids Res. 41, 2354-2369
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 2354-2369
-
-
Kazak, L.1
Reyes, A.2
Duncan, A.L.3
Rorbach, J.4
Wood, S.R.5
Brea-Calvo, G.6
Gammage, P.A.7
Robinson, A.J.8
Minczuk, M.9
Holt, I.J.10
-
40
-
-
45249096678
-
Alternative translation initiation in rat brain yields K2P2.1 potassium channels permeable to sodium
-
Thomas, D., Plant, L. D., Wilkens, C. M., McCrossan, Z. A., and Goldstein, S. A. (2008) Alternative translation initiation in rat brain yields K2P2.1 potassium channels permeable to sodium. Neuron 58, 859-870
-
(2008)
Neuron
, vol.58
, pp. 859-870
-
-
Thomas, D.1
Plant, L.D.2
Wilkens, C.M.3
McCrossan, Z.A.4
Goldstein, S.A.5
-
41
-
-
0028883850
-
Cytotoxicity-dependent APO-1 (Fas/CD95)-associated proteins form a death-inducing signaling complex (DISC) with the receptor
-
Kischkel, F. C., Hellbardt, S., Behrmann, I., Germer, M., Pawlita, M., Krammer, P. H., and Peter, M. E. (1995) Cytotoxicity-dependent APO-1 (Fas/CD95)-associated proteins form a death-inducing signaling complex (DISC) with the receptor. EMBO J. 14, 5579-5588
-
(1995)
EMBO J.
, vol.14
, pp. 5579-5588
-
-
Kischkel, F.C.1
Hellbardt, S.2
Behrmann, I.3
Germer, M.4
Pawlita, M.5
Krammer, P.H.6
Peter, M.E.7
-
42
-
-
3042807051
-
Protein N-terminal methionine excision
-
Giglione, C., Boularot, A., and Meinnel, T. (2004) Protein N-terminal methionine excision. Cell. Mol. Life Sci. 61, 1455-1474
-
(2004)
Cell. Mol. Life Sci.
, vol.61
, pp. 1455-1474
-
-
Giglione, C.1
Boularot, A.2
Meinnel, T.3
-
43
-
-
0015949361
-
N-terminal acetylation of histone-like nascent peptides on rat-liver polyribosomes in-vitro
-
Pestana, A., and Pitot, H. C. (1974) N-terminal acetylation of histone-like nascent peptides on rat-liver polyribosomes in-vitro. Nature 247, 200-202
-
(1974)
Nature
, vol.247
, pp. 200-202
-
-
Pestana, A.1
Pitot, H.C.2
-
44
-
-
0016691755
-
Acetylation of nascent polypeptidechains on rat-liver polyribosomes in vivo and in vitro
-
Pestana, A., and Pitot, H. C. (1975) Acetylation of nascent polypeptidechains on rat-liver polyribosomes in vivo and in vitro. Biochemistry 14, 1404-1412
-
(1975)
Biochemistry
, vol.14
, pp. 1404-1412
-
-
Pestana, A.1
Pitot, H.C.2
-
45
-
-
0016160639
-
N-terminal acetylation of the nascent chains of alpha-crystallin
-
Strous, G. J., Berns, A. J., and Bloemendal, H. (1974) N-terminal acetylation of the nascent chains of alpha-crystallin. Biochem. Biophys. Res. Commun. 58, 876-884
-
(1974)
Biochem. Biophys. Res. Commun.
, vol.58
, pp. 876-884
-
-
Strous, G.J.1
Berns, A.J.2
Bloemendal, H.3
-
46
-
-
0015845499
-
Synthesis of lens protein in vitro. N-terminal acetylation of alpha-crystallin
-
Strous, G. J., Van Westreenen, H., and Bloemendal, H. (1973) Synthesis of lens protein in vitro. N-terminal acetylation of alpha-crystallin. Eur. J.Biochem. /FEBS 38, 79-85
-
(1973)
Eur. J.Biochem. /FEBS
, vol.38
, pp. 79-85
-
-
Strous, G.J.1
Van Westreenen, H.2
Bloemendal, H.3
-
47
-
-
68249107043
-
Cotranslational processing mechanisms: Towards a dynamic 3D model
-
Giglione, C., Fieulaine, S., and Meinnel, T. (2009) Cotranslational processing mechanisms: Towards a dynamic 3D model. Trends Biochem. Sci. 34, 417-426
-
(2009)
Trends Biochem. Sci.
, vol.34
, pp. 417-426
-
-
Giglione, C.1
Fieulaine, S.2
Meinnel, T.3
-
48
-
-
66249126298
-
Proteomics analyses reveal the evolutionary conservation and divergence of N-terminal acetyltransferases from yeast and humans
-
Arnesen, T., Van Damme, P., Polevoda, B., Helsens, K., Evjenth, R., Colaert, N., Varhaug, J. E., Vandekerckhove, J., Lillehaug, J. R., Sherman, F., and Gevaert, K. (2009) Proteomics analyses reveal the evolutionary conservation and divergence of N-terminal acetyltransferases from yeast and humans. Proc. Natl. Acad. Sci. U.S.A. 106, 8157-8162
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 8157-8162
-
-
Arnesen, T.1
Van Damme, P.2
Polevoda, B.3
Helsens, K.4
Evjenth, R.5
Colaert, N.6
Varhaug, J.E.7
Vandekerckhove, J.8
Lillehaug, J.R.9
Sherman, F.10
Gevaert, K.11
-
49
-
-
0017293834
-
Evidence that approximately eighty per cent of the soluble proteins from Ehrlich ascites cells are Nalpha-acetylated
-
Brown, J. L., and Roberts, W. K. (1976) Evidence that approximately eighty per cent of the soluble proteins from Ehrlich ascites cells are Nalpha-acetylated. J. Biol. Chem. 251, 1009-1014
-
(1976)
J. Biol. Chem.
, vol.251
, pp. 1009-1014
-
-
Brown, J.L.1
Roberts, W.K.2
-
50
-
-
79960946480
-
Natf contributes to an evolutionary shift in protein n-terminal acetylation and is important for normal chromosome segregation
-
Van Damme, P., Hole, K., Pimenta-Marques, A., Helsens, K., Vandekerckhove, J., Martinho, R. G., Gevaert, K., and Arnesen, T. (2011) NatF contributes to an evolutionary shift in protein N-terminal acetylation and is important for normal chromosome segregation. PLoS Genet 7, e1002169
-
(2011)
PLoS Genet
, vol.7
-
-
Van Damme, P.1
Hole, K.2
Pimenta-Marques, A.3
Helsens, K.4
Vandekerckhove, J.5
Martinho, R.G.6
Gevaert, K.7
Arnesen, T.8
-
51
-
-
84859490749
-
Protein N-terminal acetyltransferases: When the start matters
-
Starheim, K. K., Gevaert, K., and Arnesen, T. (2012) Protein N-terminal acetyltransferases: When the start matters. Trends Biochem. Sci 37, 152-161
-
(2012)
Trends Biochem. Sci
, vol.37
, pp. 152-161
-
-
Starheim, K.K.1
Gevaert, K.2
Arnesen, T.3
-
52
-
-
0037462954
-
N-terminal acetyltransferases and sequence requirements for N-terminal acetylation of eukaryotic proteins
-
Polevoda, B., and Sherman, F. (2003) N-terminal acetyltransferases and sequence requirements for N-terminal acetylation of eukaryotic proteins. J. Mol. Biol. 325, 595-622
-
(2003)
J. Mol. Biol.
, vol.325
, pp. 595-622
-
-
Polevoda, B.1
Sherman, F.2
-
53
-
-
84864512849
-
N-terminal acetylome analyses and functional insights of the N-terminal acetyltransferase NatB
-
Van Damme, P., Lasa, M., Polevoda, B., Gazquez, C., Elosegui-Artola, A., Kim, D. S., De Juan-Pardo, E., Demeyer, K., Hole, K., Larrea, E., Timmerman, E., Prieto, J., Arnesen, T., Sherman, F., Gevaert, K., and Aldabe, R. (2012) N-terminal acetylome analyses and functional insights of the N-terminal acetyltransferase NatB. Proc. Natl. Acad. Sci. U.S.A. 109, 12449-12454
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 12449-12454
-
-
Van Damme, P.1
Lasa, M.2
Polevoda, B.3
Gazquez, C.4
Elosegui-Artola, A.5
Kim, D.S.6
De Juan-Pardo, E.7
Demeyer, K.8
Hole, K.9
Larrea, E.10
Timmerman, E.11
Prieto, J.12
Arnesen, T.13
Sherman, F.14
Gevaert, K.15
Aldabe, R.16
-
54
-
-
0025285067
-
Cotranslational amino-terminal processing
-
Kendall, R. L., Yamada, R., and Bradshaw, R. A. (1990) Cotranslational amino-terminal processing. Method Enzymol. 185, 398-407
-
(1990)
Method Enzymol.
, vol.185
, pp. 398-407
-
-
Kendall, R.L.1
Yamada, R.2
Bradshaw, R.A.3
-
55
-
-
77957992099
-
A quantitative proteomics design for systematic identification of protease cleavage events
-
Impens, F., Colaert, N., Helsens, K., Ghesquiere, B., Timmerman, E., De Bock, P. J., Chain, B. M., Vandekerckhove, J., and Gevaert, K. (2010) A quantitative proteomics design for systematic identification of protease cleavage events. Mol. Cell. Proteomics 9, 2327-2333
-
(2010)
Mol. Cell. Proteomics
, vol.9
, pp. 2327-2333
-
-
Impens, F.1
Colaert, N.2
Helsens, K.3
Ghesquiere, B.4
Timmerman, E.5
De Bock, P.J.6
Chain, B.M.7
Vandekerckhove, J.8
Gevaert, K.9
-
56
-
-
58149287750
-
Targeted peptidecentric proteomics reveals caspase-7 as a substrate of the caspase-1 inflammasomes
-
Lamkanfi, M., Kanneganti, T. D., Van Damme, P., Vanden Berghe, T., Vanoverberghe, I., Vandekerckhove, J., Vandenabeele, P., Gevaert, K., and Nunez, G. (2008) Targeted peptidecentric proteomics reveals caspase-7 as a substrate of the caspase-1 inflammasomes. Mol. Cell. Proteomics 7, 2350-2363
-
(2008)
Mol. Cell. Proteomics
, vol.7
, pp. 2350-2363
-
-
Lamkanfi, M.1
Kanneganti, T.D.2
Van Damme, P.3
Vanden Berghe, T.4
Vanoverberghe, I.5
Vandekerckhove, J.6
Vandenabeele, P.7
Gevaert, K.8
Nunez, G.9
-
57
-
-
61649102448
-
Analysis of protein processing by N-terminal proteomics reveals novel speciesspecific substrate determinants of granzyme B orthologs
-
Van Damme, P., Maurer-Stroh, S., Plasman, K., Van Durme, J., Colaert, N., Timmerman, E., De Bock, P. J., Goethals, M., Rousseau, F., Schymkowitz, J., Vandekerckhove, J., and Gevaert, K. (2009) Analysis of protein processing by N-terminal proteomics reveals novel speciesspecific substrate determinants of granzyme B orthologs. Mol. Cell. Proteomics 8, 258-272
-
(2009)
Mol. Cell. Proteomics
, vol.8
, pp. 258-272
-
-
Van Damme, P.1
Maurer-Stroh, S.2
Plasman, K.3
Van Durme, J.4
Colaert, N.5
Timmerman, E.6
De Bock, P.J.7
Goethals, M.8
Rousseau, F.9
Schymkowitz, J.10
Vandekerckhove, J.11
Gevaert, K.12
-
58
-
-
42049084149
-
Improved recovery of proteome-informative, protein N-terminal peptides by combined fractional diagonal chromatography (COFRADIC
-
Staes, A., Van Damme, P., Helsens, K., Demol, H., Vandekerckhove, J., and Gevaert, K. (2008) Improved recovery of proteome-informative, protein N-terminal peptides by combined fractional diagonal chromatography (COFRADIC). Proteomics 8, 1362-1370
-
(2008)
Proteomics
, vol.8
, pp. 1362-1370
-
-
Staes, A.1
Van Damme, P.2
Helsens, K.3
Demol, H.4
Vandekerckhove, J.5
Gevaert, K.6
-
59
-
-
84879936964
-
Deep proteome coverage based on ribosome profiling aids mass spectrometry-based protein and peptide discovery and provides evidence of alternative translation products and near-cognate translation initiation events
-
Menschaert, G., Van Criekinge, W., Notelaers, T., Koch, A., Crappe, J., Gevaert, K., and Van Damme, P. (2013) Deep proteome coverage based on ribosome profiling aids mass spectrometry-based protein and peptide discovery and provides evidence of alternative translation products and near-cognate translation initiation events. Mol. Cell. Proteomics 12, 1780-1790
-
(2013)
Mol. Cell. Proteomics
, vol.12
, pp. 1780-1790
-
-
Menschaert, G.1
Van Criekinge, W.2
Notelaers, T.3
Koch, A.4
Crappe, J.5
Gevaert, K.6
Van Damme, P.7
-
60
-
-
24144480557
-
Dbtoolkit: Processing protein databases for peptide-centric proteomics
-
Martens, L., Vandekerckhove, J., and Gevaert, K. (2005) DBToolkit: Processing protein databases for peptide-centric proteomics. Bioinformatics 21, 3584-3585
-
(2005)
Bioinformatics
, vol.21
, pp. 3584-3585
-
-
Martens, L.1
Vandekerckhove, J.2
Gevaert, K.3
-
61
-
-
2142738304
-
WebLogo: A sequence logo generator
-
Crooks, G. E., Hon, G., Chandonia, J. M., and Brenner, S. E. (2004) WebLogo: A sequence logo generator. Genome Res. 14, 1188-1190
-
(2004)
Genome Res.
, vol.14
, pp. 1188-1190
-
-
Crooks, G.E.1
Hon, G.2
Chandonia, J.M.3
Brenner, S.E.4
-
62
-
-
67650064594
-
The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes
-
Pruitt, K. D., Harrow, J., Harte, R. A., Wallin, C., Diekhans, M., Maglott, D. R., Searle, S., Farrell, C. M., Loveland, J. E., Ruef, B. J., Hart, E., Suner, M. M., Landrum, M. J., Aken, B., Ayling, S., Baertsch, R., Fernandez-Banet, J., Cherry, J. L., Curwen, V., Dicuccio, M., Kellis, M., Lee, J., Lin, M. F., Schuster, M., Shkeda, A., Amid, C., Brown, G., Dukhanina, O., Frankish, A., Hart, J., Maidak, B. L., Mudge, J., Murphy, M. R., Murphy, T., Rajan, J., Rajput, B., Riddick, L. D., Snow, C., Steward, C., Webb, D., Weber, J. A., Wilming, L., Wu, W., Birney, E., Haussler, D., Hubbard, T., Ostell, J., Durbin, R., and Lipman, D. (2009) The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes. Genome Res. 19, 1316-1323
-
(2009)
Genome Res.
, vol.19
, pp. 1316-1323
-
-
Pruitt, K.D.1
Harrow, J.2
Harte, R.A.3
Wallin, C.4
Diekhans, M.5
Maglott, D.R.6
Searle, S.7
Farrell, C.M.8
Loveland, J.E.9
Ruef, B.J.10
Hart, E.11
Suner, M.M.12
Landrum, M.J.13
Aken, B.14
Ayling, S.15
Baertsch, R.16
Fernandez-Banet, J.17
Cherry, J.L.18
Curwen, V.19
Dicuccio, M.20
Kellis, M.21
Lee, J.22
Lin, M.F.23
Schuster, M.24
Shkeda, A.25
Amid, C.26
Brown, G.27
Dukhanina, O.28
Frankish, A.29
Hart, J.30
Maidak, B.L.31
Mudge, J.32
Murphy, M.R.33
Murphy, T.34
Rajan, J.35
Rajput, B.36
Riddick, L.D.37
Snow, C.38
Steward, C.39
Webb, D.40
Weber, J.A.41
Wilming, L.42
Wu, W.43
Birney, E.44
Haussler, D.45
Hubbard, T.46
Ostell, J.47
Durbin, R.48
Lipman, D.49
more..
-
63
-
-
84864453787
-
The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments
-
Ingolia, N. T., Brar, G. A., Rouskin, S., McGeachy, A. M., and Weissman, J. S. (2012) The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments. Nat. Protoc. 7, 1534-1550
-
(2012)
Nat. Protoc.
, vol.7
, pp. 1534-1550
-
-
Ingolia, N.T.1
Brar, G.A.2
Rouskin, S.3
McGeachy, A.M.4
Weissman, J.S.5
-
64
-
-
84858221706
-
Ensembl 2012
-
Flicek, P., Amode, M. R., Barrell, D., Beal, K., Brent, S., Carvalho-Silva, D., Clapham, P., Coates, G., Fairley, S., Fitzgerald, S., Gil, L., Gordon, L., Hendrix, M., Hourlier, T., Johnson, N., Kahari, A. K., Keefe, D., Keenan, S., Kinsella, R., Komorowska, M., Koscielny, G., Kulesha, E., Larsson, P., Longden, I., McLaren, W., Muffato, M., Overduin, B., Pignatelli, M., Pritchard, B., Riat, H. S., Ritchie, G. R., Ruffier, M., Schuster, M., Sobral, D., Tang, Y. A., Taylor, K., Trevanion, S., Vandrovcova, J., White, S., Wilson, M., Wilder, S. P., Aken, B. L., Birney, E., Cunningham, F., Dunham, I., Durbin, R., Fernandez-Suarez, X. M., Harrow, J., Herrero, J., Hubbard, T. J., Parker, A., Proctor, G., Spudich, G., Vogel, J., Yates, A., Zadissa, A., and Searle, S. M. (2012) Ensembl 2012. Nucleic Acids Res. 40, D84-D90
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 84-90
-
-
Flicek, P.1
Amode, M.R.2
Barrell, D.3
Beal, K.4
Brent, S.5
Carvalho-Silva, D.6
Clapham, P.7
Coates, G.8
Fairley, S.9
Fitzgerald, S.10
Gil, L.11
Gordon, L.12
Hendrix, M.13
Hourlier, T.14
Johnson, N.15
Kahari, A.K.16
Keefe, D.17
Keenan, S.18
Kinsella, R.19
Komorowska, M.20
Koscielny, G.21
Kulesha, E.22
Larsson, P.23
Longden, I.24
McLaren, W.25
Muffato, M.26
Overduin, B.27
Pignatelli, M.28
Pritchard, B.29
Riat, H.S.30
Ritchie, G.R.31
Ruffier, M.32
Schuster, M.33
Sobral, D.34
Tang, Y.A.35
Taylor, K.36
Trevanion, S.37
Vandrovcova, J.38
White, S.39
Wilson, M.40
Wilder, S.P.41
Aken, B.L.42
Birney, E.43
Cunningham, F.44
Dunham, I.45
Durbin, R.46
Fernandez-Suarez, X.M.47
Harrow, J.48
Herrero, J.49
Hubbard, T.J.50
Parker, A.51
Proctor, G.52
Spudich, G.53
Vogel, J.54
Yates, A.55
Zadissa, A.56
Searle, S.M.57
more..
-
65
-
-
23744458086
-
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
-
Siepel, A., Bejerano, G., Pedersen, J. S., Hinrichs, A. S., Hou, M., Rosenbloom, K., Clawson, H., Spieth, J., Hillier, L. W., Richards, S., Weinstock, G. M., Wilson, R. K., Gibbs, R. A., Kent, W. J., Miller, W., and Haussler, D. (2005) Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Res. 15, 1034-1050
-
(2005)
Genome Res.
, vol.15
, pp. 1034-1050
-
-
Siepel, A.1
Bejerano, G.2
Pedersen, J.S.3
Hinrichs, A.S.4
Hou, M.5
Rosenbloom, K.6
Clawson, H.7
Spieth, J.8
Hillier, L.W.9
Richards, S.10
Weinstock, G.M.11
Wilson, R.K.12
Gibbs, R.A.13
Kent, W.J.14
Miller, W.15
Haussler, D.16
-
66
-
-
38049103341
-
Statistical power of phylo-HMM for evolutionarily conserved element detection
-
Fan, X., Zhu, J., Schadt, E. E., and Liu, J. S. (2007) Statistical power of phylo-HMM for evolutionarily conserved element detection. BMC Bioinformatics 8, 374
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 374
-
-
Fan, X.1
Zhu, J.2
Schadt, E.E.3
Liu, J.S.4
-
67
-
-
67849095416
-
Biomart central portal- unified access to biological data
-
Haider, S., Ballester, B., Smedley, D., Zhang, J., Rice, P., and Kasprzyk, A. (2009) BioMart Central Portal- unified access to biological data. Nucleic Acids Res. 37, W23-W27
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 23-27
-
-
Haider, S.1
Ballester, B.2
Smedley, D.3
Zhang, J.4
Rice, P.5
Kasprzyk, A.6
-
68
-
-
78651289449
-
Ensembl 2011
-
Flicek, P., Amode, M. R., Barrell, D., Beal, K., Brent, S., Chen, Y., Clapham, P., Coates, G., Fairley, S., Fitzgerald, S., Gordon, L., Hendrix, M., Hourlier, T., Johnson, N., Kahari, A., Keefe, D., Keenan, S., Kinsella, R., Kokocinski, F., Kulesha, E., Larsson, P., Longden, I., McLaren, W., Overduin, B., Pritchard, B., Riat, H. S., Rios, D., Ritchie, G. R., Ruffier, M., Schuster, M., Sobral, D., Spudich, G., Tang, Y. A., Trevanion, S., Vandrovcova, J., Vilella, A. J., White, S., Wilder, S. P., Zadissa, A., Zamora, J., Aken, B. L., Birney, E., Cunningham, F., Dunham, I., Durbin, R., Fernandez-Suarez, X. M., Herrero, J., Hubbard, T. J., Parker, A., Proctor, G., Vogel, J., and Searle, S. M. (2011) Ensembl 2011. Nucleic Acids Res. 39, D800-D806
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 800-806
-
-
Flicek, P.1
Amode, M.R.2
Barrell, D.3
Beal, K.4
Brent, S.5
Chen, Y.6
Clapham, P.7
Coates, G.8
Fairley, S.9
Fitzgerald, S.10
Gordon, L.11
Hendrix, M.12
Hourlier, T.13
Johnson, N.14
Kahari, A.15
Keefe, D.16
Keenan, S.17
Kinsella, R.18
Kokocinski, F.19
Kulesha, E.20
Larsson, P.21
Longden, I.22
McLaren, W.23
Overduin, B.24
Pritchard, B.25
Riat, H.S.26
Rios, D.27
Ritchie, G.R.28
Ruffier, M.29
Schuster, M.30
Sobral, D.31
Spudich, G.32
Tang, Y.A.33
Trevanion, S.34
Vandrovcova, J.35
Vilella, A.J.36
White, S.37
Wilder, S.P.38
Zadissa, A.39
Zamora, J.40
Aken, B.L.41
Birney, E.42
Cunningham, F.43
Dunham, I.44
Durbin, R.45
Fernandez-Suarez, X.M.46
Herrero, J.47
Hubbard, T.J.48
Parker, A.49
Proctor, G.50
Vogel, J.51
Searle, S.M.52
more..
-
69
-
-
34248531753
-
Locating proteins in the cell using targetp signalp and related tools
-
Emanuelsson, O., Brunak, S., von Heijne, G., and Nielsen, H. (2007) Locating proteins in the cell using TargetP, SignalP and related tools. Nat. Protoc. 2, 953-971
-
(2007)
Nat. Protoc.
, vol.2
, pp. 953-971
-
-
Emanuelsson, O.1
Brunak, S.2
Von Heijne, G.3
Nielsen, H.4
-
70
-
-
0038333588
-
Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides
-
Gevaert, K., Goethals, M., Martens, L., Van Damme, J., Staes, A., Thomas, G. R., and Vandekerckhove, J. (2003) Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides. Nat. Biotechnol. 21, 566-569
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 566-569
-
-
Gevaert, K.1
Goethals, M.2
Martens, L.3
Van Damme, J.4
Staes, A.5
Thomas, G.R.6
Vandekerckhove, J.7
-
71
-
-
80053415277
-
Protein alpha-nacetylation studied by n-terminomics
-
Van Damme, P., Arnesen, T., and Gevaert, K. (2011) Protein alpha-Nacetylation studied by N-terminomics. FEBS J 278, 3822-3834
-
(2011)
FEBS J
, vol.278
, pp. 3822-3834
-
-
Van Damme, P.1
Arnesen, T.2
Gevaert, K.3
-
72
-
-
80053604348
-
Selecting protein N-terminal peptides by combined fractional diagonal chromatography
-
Staes, A., Impens, F., Van Damme, P., Ruttens, B., Goethals, M., Demol, H., Timmerman, E., Vandekerckhove, J., and Gevaert, K. (2011) Selecting protein N-terminal peptides by combined fractional diagonal chromatography. Nat. Protoc. 6, 1130-1141
-
(2011)
Nat. Protoc.
, vol.6
, pp. 1130-1141
-
-
Staes, A.1
Impens, F.2
Van Damme, P.3
Ruttens, B.4
Goethals, M.5
Demol, H.6
Timmerman, E.7
Vandekerckhove, J.8
Gevaert, K.9
-
73
-
-
72949111831
-
Identification and functional characterization of n-terminally acetylated proteins in drosophila melanogaster
-
Goetze, S., Qeli, E., Mosimann, C., Staes, A., Gerrits, B., Roschitzki, B., Mohanty, S., Niederer, E. M., Laczko, E., Timmerman, E., Lange, V., Hafen, E., Aebersold, R., Vandekerckhove, J., Basler, K., Ahrens, C. H., Gevaert, K., and Brunner, E. (2009) Identification and functional characterization of N-terminally acetylated proteins in Drosophila melanogaster. PLoS Biol 7, e1000236
-
(2009)
PLoS Biol
, vol.7
-
-
Goetze, S.1
Qeli, E.2
Mosimann, C.3
Staes, A.4
Gerrits, B.5
Roschitzki, B.6
Mohanty, S.7
Niederer, E.M.8
Laczko, E.9
Timmerman, E.10
Lange, V.11
Hafen, E.12
Aebersold, R.13
Vandekerckhove, J.14
Basler, K.15
Ahrens, C.H.16
Gevaert, K.17
Brunner, E.18
-
74
-
-
84862227658
-
TopFIND 2.0 -linking protein termini with proteolytic processing and modifications altering protein function
-
Lange, P. F., Huesgen, P. F., and Overall, C. M. (2012) TopFIND 2.0 -linking protein termini with proteolytic processing and modifications altering protein function. Nucleic Acids Res. 40, D351-D361
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 351-361
-
-
Lange, P.F.1
Huesgen, P.F.2
Overall, C.M.3
-
75
-
-
84874616810
-
The DegraBase: A database of proteolysis in healthy and apoptotic human cells
-
Crawford, E. D., Seaman, J. E., Agard, N., Hsu, G. W., Julien, O., Mahrus, S., Nguyen, H., Shimbo, K., Yoshihara, H. A., Zhuang, M., Chalkley, R. J., and Wells, J. A. (2013) The DegraBase: A database of proteolysis in healthy and apoptotic human cells. Mol. Cell. Proteomics 12, 813-824
-
(2013)
Mol. Cell. Proteomics
, vol.12
, pp. 813-824
-
-
Crawford, E.D.1
Seaman, J.E.2
Agard, N.3
Hsu, G.W.4
Julien, O.5
Mahrus, S.6
Nguyen, H.7
Shimbo, K.8
Yoshihara, H.A.9
Zhuang, M.10
Chalkley, R.J.11
Wells, J.A.12
-
76
-
-
84859426282
-
MEROPS: The database of proteolytic enzymes, their substrates and inhibitors
-
Rawlings, N. D., Barrett, A. J., and Bateman, A. (2012) MEROPS: The database of proteolytic enzymes, their substrates and inhibitors. Nucleic Acids Res. 40, D343-D350
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 343-350
-
-
Rawlings, N.D.1
Barrett, A.J.2
Bateman, A.3
-
77
-
-
84876553084
-
The online protein processing resource (toppr): A database and analysis platform for protein processing events
-
Colaert, N., Maddelein, D., Impens, F., Van Damme, P., Plasman, K., Helsens, K., Hulstaert, N., Vandekerckhove, J., Gevaert, K., and Martens, L. (2013) The Online Protein Processing Resource (TOPPR): A database and analysis platform for protein processing events. Nucleic Acids Res. 41, D333-D337
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 333-337
-
-
Colaert, N.1
Maddelein, D.2
Impens, F.3
Van Damme, P.4
Plasman, K.5
Helsens, K.6
Hulstaert, N.7
Vandekerckhove, J.8
Gevaert, K.9
Martens, L.10
-
78
-
-
2142738304
-
WebLogo: A sequence logo generator
-
Crooks, G. E., Hon, G., Chandonia, J. M., and Brenner, S. E. (2004) WebLogo: A sequence logo generator. Genome Res. 14, 1188-1190
-
(2004)
Genome Res.
, vol.14
, pp. 1188-1190
-
-
Crooks, G.E.1
Hon, G.2
Chandonia, J.M.3
Brenner, S.E.4
-
79
-
-
0023665902
-
An analysis of 5-noncoding sequences from 699 vertebrate messenger RNAs
-
Kozak, M. (1987) An analysis of 5-noncoding sequences from 699 vertebrate messenger RNAs. Nucleic Acids Res. 15, 8125-8148
-
(1987)
Nucleic Acids Res.
, vol.15
, pp. 8125-8148
-
-
Kozak, M.1
-
80
-
-
77649198142
-
A universal trend of reduced mRNA stability near the translation- initiation site in prokaryotes and eukaryotes
-
Gu, W., Zhou, T., and Wilke, C. O. (2010) A universal trend of reduced mRNA stability near the translation-initiation site in prokaryotes and eukaryotes. PLoS Comput. Biol. 6, e1000664
-
(2010)
PLoS Comput. Biol.
, vol.6
-
-
Gu, W.1
Zhou, T.2
Wilke, C.O.3
-
81
-
-
0027998460
-
Distribution profiles of gc content around the translation initiation site in different species
-
Mizuno, M., and Kanehisa, M. (1994) Distribution profiles of GC content around the translation initiation site in different species. FEBS Lett. 352, 7-10
-
(1994)
FEBS Lett.
, vol.352
, pp. 7-10
-
-
Mizuno, M.1
Kanehisa, M.2
-
82
-
-
35548935529
-
AUG-hairpin: Prediction of a downstream secondary structure influencing the recognition of a translation start site
-
Kochetov, A. V., Palyanov, A., Titov, II, Grigorovich, D., Sarai, A., and Kolchanov, N. A. (2007) AUG-hairpin: Prediction of a downstream secondary structure influencing the recognition of a translation start site. BMC Bioinformatics 8, 318
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 318
-
-
Kochetov, A.V.1
Palyanov, A.2
Titov, I.I.3
Grigorovich, D.4
Sarai, A.5
Kolchanov, N.A.6
-
83
-
-
28844476749
-
Alternative mechanisms of initiating translation of mammalian mRNAs
-
Jackson, R. J. (2005) Alternative mechanisms of initiating translation of mammalian mRNAs. Biochem. Soc. Trans. 33, 1231-1241
-
(2005)
Biochem. Soc. Trans.
, vol.33
, pp. 1231-1241
-
-
Jackson, R.J.1
-
84
-
-
46049107404
-
Alternative translation start sites and hidden coding potential of eukaryotic mRNAs
-
Kochetov, A. V. (2008) Alternative translation start sites and hidden coding potential of eukaryotic mRNAs. Bioessays 30, 683-691
-
(2008)
Bioessays
, vol.30
, pp. 683-691
-
-
Kochetov, A.V.1
-
85
-
-
41449117605
-
UORFs, reinitiation and alternative translation start sites in human mRNAs
-
Kochetov, A. V., Ahmad, S., Ivanisenko, V., Volkova, O. A., Kolchanov, N. A., and Sarai, A. (2008) uORFs, reinitiation and alternative translation start sites in human mRNAs. FEBS Lett. 582, 1293-1297
-
(2008)
FEBS Lett.
, vol.582
, pp. 1293-1297
-
-
Kochetov, A.V.1
Ahmad, S.2
Ivanisenko, V.3
Volkova, O.A.4
Kolchanov, N.A.5
Sarai, A.6
-
86
-
-
76749108599
-
Interrelations between the nucleotide context of human start AUG codon, N-end amino acids of the encoded protein and initiation of translation
-
Volkova, O. A., and Kochetov, A. V. (2010) Interrelations between the nucleotide context of human start AUG codon, N-end amino acids of the encoded protein and initiation of translation. J. Biomol. Struct. Dyn. 27, 611-618
-
(2010)
J. Biomol. Struct. Dyn.
, vol.27
, pp. 611-618
-
-
Volkova, O.A.1
Kochetov, A.V.2
-
87
-
-
79551487629
-
Alternative translation start sites are conserved in eukaryotic genomes
-
Bazykin, G. A., and Kochetov, A. V. (2011) Alternative translation start sites are conserved in eukaryotic genomes. Nucleic Acids Res. 39, 567-577
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 567-577
-
-
Bazykin, G.A.1
Kochetov, A.V.2
-
88
-
-
0024488958
-
The code within the codons
-
Taylor, F. J., and Coates, D. (1989) The code within the codons. Biosystems 22, 177-187
-
(1989)
Biosystems
, vol.22
, pp. 177-187
-
-
Taylor, F.J.1
Coates, D.2
-
89
-
-
34248531753
-
Locating proteins in the cell using targetp signalp and related tools
-
Emanuelsson, O., Brunak, S., von Heijne, G., and Nielsen, H. (2007) Locating proteins in the cell using TargetP, SignalP and related tools. Nat. Protoc. 2, 953-971
-
(2007)
Nat. Protoc.
, vol.2
, pp. 953-971
-
-
Emanuelsson, O.1
Brunak, S.2
Von Heijne, G.3
Nielsen, H.4
-
90
-
-
79955745746
-
A nuclear variant of ErbB3 receptor tyrosine kinase regulates ezrin distribution and Schwann cell myelination
-
Adilakshmi, T., Ness-Myers, J., Madrid-Aliste, C., Fiser, A., and Tapinos, N. (2011) A nuclear variant of ErbB3 receptor tyrosine kinase regulates ezrin distribution and Schwann cell myelination. J. Neurosci. 31, 5106-5119
-
(2011)
J. Neurosci.
, vol.31
, pp. 5106-5119
-
-
Adilakshmi, T.1
Ness-Myers, J.2
Madrid-Aliste, C.3
Fiser, A.4
Tapinos, N.5
-
91
-
-
31944443120
-
Alteration of protein subcellular location and domain formation by alternative translational initiation
-
Cai, J., Huang, Y., Li, F., and Li, Y. (2006) Alteration of protein subcellular location and domain formation by alternative translational initiation. Proteins 62, 793-799
-
(2006)
Proteins
, vol.62
, pp. 793-799
-
-
Cai, J.1
Huang, Y.2
Li, F.3
Li, Y.4
-
92
-
-
33847409304
-
Unconventional translation initiation of human trypsinogen 4 at a CUG codon with an N-terminal leucine. A possible means to regulate gene expression
-
Nemeth, A. L., Medveczky, P., Toth, J., Siklodi, E., Schlett, K., Patthy, A., Palkovits, M., Ovadi, J., Tokesi, N., Nemeth, P., Szilagyi, L., and Graf, L. (2007) Unconventional translation initiation of human trypsinogen 4 at a CUG codon with an N-terminal leucine. A possible means to regulate gene expression. FEBS J 274, 1610-1620
-
(2007)
FEBS J
, vol.274
, pp. 1610-1620
-
-
Nemeth, A.L.1
Medveczky, P.2
Toth, J.3
Siklodi, E.4
Schlett, K.5
Patthy, A.6
Palkovits, M.7
Ovadi, J.8
Tokesi, N.9
Nemeth, P.10
Szilagyi, L.11
Graf, L.12
-
93
-
-
14044254752
-
Unanticipated antigens: Translation initiation at CUG with leucine
-
Schwab, S. R., Shugart, J. A., Horng, T., Malarkannan, S., and Shastri, N. (2004) Unanticipated antigens: Translation initiation at CUG with leucine. PLoS Biol 2, e366
-
(2004)
PLoS Biol
, vol.2
-
-
Schwab, S.R.1
Shugart, J.A.2
Horng, T.3
Malarkannan, S.4
Shastri, N.5
-
94
-
-
33745614073
-
Close spacing of AUG initiation codons confers dicistronic character on a eukaryotic mRNA
-
Matsuda, D., and Dreher, T. W. (2006) Close spacing of AUG initiation codons confers dicistronic character on a eukaryotic mRNA. RNA 12, 1338-1349
-
(2006)
RNA
, vol.12
, pp. 1338-1349
-
-
Matsuda, D.1
Dreher, T.W.2
-
95
-
-
84858052525
-
Two isoforms of the mRNA binding protein IGF2BP2 are generated by alternative translational initiation
-
Le, H. T., Sorrell, A. M., and Siddle, K. (2012) Two isoforms of the mRNA binding protein IGF2BP2 are generated by alternative translational initiation. PLoS One 7, e33140
-
(2012)
PLoS One
, vol.7
-
-
Le, H.T.1
Sorrell, A.M.2
Siddle, K.3
-
96
-
-
33745090483
-
Glucocorticoid receptor isoforms generate transcription specificity
-
Lu, N. Z., and Cidlowski, J. A. (2006) Glucocorticoid receptor isoforms generate transcription specificity. Trends Cell Biol. 16, 301-307
-
(2006)
Trends Cell Biol.
, vol.16
, pp. 301-307
-
-
Lu, N.Z.1
Cidlowski, J.A.2
-
97
-
-
9144260111
-
Alternative translation initiation generates a novel isoform of insulin-degrading enzyme targeted to mitochondria
-
Leissring, M. A., Farris, W., Wu, X., Christodoulou, D. C., Haigis, M. C., Guarente, L., and Selkoe, D. J. (2004) Alternative translation initiation generates a novel isoform of insulin-degrading enzyme targeted to mitochondria. Biochem. J. 383, 439-446
-
(2004)
Biochem. J.
, vol.383
, pp. 439-446
-
-
Leissring, M.A.1
Farris, W.2
Wu, X.3
Christodoulou, D.C.4
Haigis, M.C.5
Guarente, L.6
Selkoe, D.J.7
-
98
-
-
37349018834
-
Alternative translation initiation of human regulators of G-protein signaling-2 yields a set of functionally distinct proteins
-
Gu, S., Anton, A., Salim, S., Blumer, K. J., Dessauer, C. W., and Heximer, S. P. (2008) Alternative translation initiation of human regulators of G-protein signaling-2 yields a set of functionally distinct proteins. Mol. Pharmacol. 73, 1-11
-
(2008)
Mol. Pharmacol.
, vol.73
, pp. 1-11
-
-
Gu, S.1
Anton, A.2
Salim, S.3
Blumer, K.J.4
Dessauer, C.W.5
Heximer, S.P.6
-
99
-
-
0034003218
-
Isoform-specific expression of BAG-1 in mouse development
-
Crocoll, A., Blum, M., and Cato, A. C. (2000) Isoform-specific expression of BAG-1 in mouse development. Mech. Dev. 91, 355-359
-
(2000)
Mech. Dev.
, vol.91
, pp. 355-359
-
-
Crocoll, A.1
Blum, M.2
Cato, A.C.3
-
100
-
-
84899715266
-
Elucidating mechanisms of translation with computational analysis of ribo-seq data
-
Heidelberg, Germany 2013
-
Michel, A., O?connor, P., Choudhury, K. R., Firth, A., Li, G. W., Ingolia, N. T., Weissman, J. S., Atkins, J., and Baranov, P. (2013) Elucidating mechanisms of translation with computational analysis of ribo-seq data. Abstract EMBO Conference Series entitled ?Protein Synthesis and Translational Control?, Heidelberg, Germany 2013
-
(2013)
Abstract EMBO Conference Series Entitled ?Protein Synthesis and Translational Control?
-
-
Michel, A.1
Oconnor, P.2
Choudhury, K.R.3
Firth, A.4
Li, G.W.5
Ingolia, N.T.6
Weissman, J.S.7
Atkins, J.8
Baranov, P.9
-
101
-
-
77149120798
-
N-terminal acetylation of cellular proteins creates specific degradation signals
-
Hwang, C. S., Shemorry, A., and Varshavsky, A. (2010) N-terminal acetylation of cellular proteins creates specific degradation signals. Science 327, 973-977
-
(2010)
Science
, vol.327
, pp. 973-977
-
-
Hwang, C.S.1
Shemorry, A.2
Varshavsky, A.3
-
102
-
-
2342546616
-
Targeting of the arf-like gtpase arl3p to the golgi requires n-terminal acetylation and the membrane protein Sys1p
-
Behnia, R., Panic, B., Whyte, J. R., and Munro, S. (2004) Targeting of the Arf-like GTPase Arl3p to the Golgi requires N-terminal acetylation and the membrane protein Sys1p. Nat. Cell Biol. 6, 405-413
-
(2004)
Nat. Cell Biol.
, vol.6
, pp. 405-413
-
-
Behnia, R.1
Panic, B.2
Whyte, J.R.3
Munro, S.4
-
103
-
-
84878195272
-
Control of protein quality and stoichiometries by N-terminal acetylation and the N-end rule pathway
-
Shemorry, A., Hwang, C. S., and Varshavsky, A. (2013) Control of protein quality and stoichiometries by N-terminal acetylation and the N-end rule pathway. Mol. Cell 50, 540-551
-
(2013)
Mol. Cell
, vol.50
, pp. 540-551
-
-
Shemorry, A.1
Hwang, C.S.2
Varshavsky, A.3
-
104
-
-
44849115170
-
A novel mutation in NFKBIA/IKBA results in a degradation-resistant N-truncated protein and is associated with ectodermal dysplasia with immunodeficiency
-
Lopez-Granados, E., Keenan, J. E., Kinney, M. C., Leo, H., Jain, N., Ma, C. A., Quinones, R., Gelfand, E. W., and Jain, A. (2008) A novel mutation in NFKBIA/IKBA results in a degradation-resistant N-truncated protein and is associated with ectodermal dysplasia with immunodeficiency. Hum. Mutat. 29, 861-868
-
(2008)
Hum. Mutat.
, vol.29
, pp. 861-868
-
-
Lopez-Granados, E.1
Keenan, J.E.2
Kinney, M.C.3
Leo, H.4
Jain, N.5
Ma, C.A.6
Quinones, R.7
Gelfand, E.W.8
Jain, A.9
-
105
-
-
34948908695
-
Heterozygous N-terminal deletion of IkappaBalpha results in functional nuclear factor kappaB haploinsufficiency, ectodermal dysplasia, and immune deficiency
-
McDonald, D. R., Mooster, J. L., Reddy, M., Bawle, E., Secord, E., and Geha, R. S. (2007) Heterozygous N-terminal deletion of IkappaBalpha results in functional nuclear factor kappaB haploinsufficiency, ectodermal dysplasia, and immune deficiency. J. Allergy Clin. Immunol. 120, 900-907
-
(2007)
J. Allergy Clin. Immunol.
, vol.120
, pp. 900-907
-
-
McDonald, D.R.1
Mooster, J.L.2
Reddy, M.3
Bawle, E.4
Secord, E.5
Geha, R.S.6
-
106
-
-
33645473267
-
The nemo mutation creating the most-upstream premature stop codon is hypomorphic because of a reinitiation of translation
-
Puel, A., Reichenbach, J., Bustamante, J., Ku, C. L., Feinberg, J., Doffinger, R., Bonnet, M., Filipe-Santos, O., de Beaucoudrey, L., Durandy, A., Horneff, G., Novelli, F., Wahn, V., Smahi, A., Israel, A., Niehues, T., and Casanova, J. L. (2006) The NEMO mutation creating the most-upstream premature stop codon is hypomorphic because of a reinitiation of translation. Am. J. Hum. Genet. 78, 691-701
-
(2006)
Am. J. Hum. Genet.
, vol.78
, pp. 691-701
-
-
Puel, A.1
Reichenbach, J.2
Bustamante, J.3
Ku, C.L.4
Feinberg, J.5
Doffinger, R.6
Bonnet, M.7
Filipe-Santos, O.8
De Beaucoudrey, L.9
Durandy, A.10
Horneff, G.11
Novelli, F.12
Wahn, V.13
Smahi, A.14
Israel, A.15
Niehues, T.16
Casanova, J.L.17
-
107
-
-
0033553472
-
Biosynthesis of osteogenic growth peptide via alternative translational initiation at AUG85 of histone H4 mRNA
-
Bab, I., Smith, E., Gavish, H., Attar-Namdar, M., Chorev, M., Chen, Y. C., Muhlrad, A., Birnbaum, M. J., Stein, G., and Frenkel, B. (1999) Biosynthesis of osteogenic growth peptide via alternative translational initiation at AUG85 of histone H4 mRNA. J. Biol. Chem. 274, 14474-14481
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 14474-14481
-
-
Bab, I.1
Smith, E.2
Gavish, H.3
Attar-Namdar, M.4
Chorev, M.5
Chen, Y.C.6
Muhlrad, A.7
Birnbaum, M.J.8
Stein, G.9
Frenkel, B.10
-
108
-
-
84879969127
-
Ribosome profiling provides evidence that large noncoding RNAs do not encode proteins
-
Guttman, M., Russell, P., Ingolia, N. T., Weissman, J. S., and Lander, E. S. (2013) Ribosome profiling provides evidence that large noncoding RNAs do not encode proteins. Cell 154, 240-251
-
(2013)
Cell
, vol.154
, pp. 240-251
-
-
Guttman, M.1
Russell, P.2
Ingolia, N.T.3
Weissman, J.S.4
Lander, E.S.5
-
109
-
-
77949750038
-
Ms-lims, a simple yet powerful open source laboratory information management system for MS-driven proteomics
-
Helsens, K., Colaert, N., Barsnes, H., Muth, T., Flikka, K., Staes, A., Timmerman, E., Wortelkamp, S., Sickmann, A., Vandekerckhove, J., Gevaert, K., and Martens, L. (2010) ms-lims, a simple yet powerful open source laboratory information management system for MS-driven proteomics. Proteomics 10, 1261-1264
-
(2010)
Proteomics
, vol.10
, pp. 1261-1264
-
-
Helsens, K.1
Colaert, N.2
Barsnes, H.3
Muth, T.4
Flikka, K.5
Staes, A.6
Timmerman, E.7
Wortelkamp, S.8
Sickmann, A.9
Vandekerckhove, J.10
Gevaert, K.11
Martens, L.12
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