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Volumn 4, Issue 11, 2018, Pages

The genetic prehistory of the Andean highlands 7000 years BP though European contact

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEX MODES; COMPLEX PROCESSES; GENETIC VARIATION; HIGH ELEVATION; PATHOGEN RESISTANCE; POSITIVE SELECTION; SELECTIVE SWEEP; STARCH DIGESTIONS;

EID: 85056346614     PISSN: None     EISSN: 23752548     Source Type: Journal    
DOI: 10.1126/sciadv.aau4921     Document Type: Article
Times cited : (87)

References (88)
  • 1
    • 84908210294 scopus 로고    scopus 로고
    • Adaptation to high altitude: Phenotypes and genotypes
    • C. M. Beall, Adaptation to high altitude: Phenotypes and genotypes. Annu. Rev. Anthropol. 43, 251-272 (2014).
    • (2014) Annu. Rev. Anthropol , vol.43 , pp. 251-272
    • Beall, C.M.1
  • 2
    • 33747333661 scopus 로고    scopus 로고
    • Modelling plateau peoples: The early human use of the world's high plateaux
    • M. Aldenderfer, Modelling plateau peoples: The early human use of the world's high plateaux. World Archaeol. 38, 357-370 (2007).
    • (2007) World Archaeol , vol.38 , pp. 357-370
    • Aldenderfer, M.1
  • 5
    • 85056302804 scopus 로고    scopus 로고
    • Investigating mobility and highland occupation strategies during the Early Holocene at the Cuncaicha rock shelter through strontium and oxygen isotopes
    • D. Chala-Aldana, H. Bocherens, C. Miller, K. Moore, G. Hodgins, K. Rademaker, Investigating mobility and highland occupation strategies during the Early Holocene at the Cuncaicha rock shelter through strontium and oxygen isotopes. J. Archaeol. Sci. Rep. (2017).
    • (2017) J. Archaeol. Sci. Rep
    • Chala-Aldana, D.1    Bocherens, H.2    Miller, C.3    Moore, K.4    Hodgins, G.5    Rademaker, K.6
  • 7
    • 84999232944 scopus 로고    scopus 로고
    • Late Archaic-Early Formative period microbotanical evidence for potato at Jiskairumoko in the Titicaca Basin of southern Peru
    • U.S.A
    • C. U. Rumold, M. S. Aldenderfer, Late Archaic-Early Formative period microbotanical evidence for potato at Jiskairumoko in the Titicaca Basin of southern Peru. Proc. Natl. Acad. Sci. U.S.A. 113, 13672-13677 (2016).
    • (2016) Proc. Natl. Acad. Sci , vol.113 , pp. 13672-13677
    • Rumold, C.U.1    Aldenderfer, M.S.2
  • 10
    • 84976592586 scopus 로고    scopus 로고
    • Hunter-gatherers on the Eve of agriculture: Investigations at Soro Mik'aya Patjxa, Lake Titicaca Basin, Peru, 8000-6700 BP
    • W. R. Haas, C. V. Llave, Hunter-gatherers on the eve of agriculture: Investigations at Soro Mik'aya Patjxa, Lake Titicaca Basin, Peru, 8000-6700 BP. Antiquity 89, 1297-1312 (2015).
    • (2015) Antiquity , vol.89 , pp. 1297-1312
    • Haas, W.R.1    Llave, C.V.2
  • 11
    • 84950458447 scopus 로고    scopus 로고
    • Titicaca Basin archaeolinguistics: Uru, Pukina and Aymara AD 750-1450
    • D. L. Browman, Titicaca Basin archaeolinguistics: Uru, Pukina and Aymara AD 750-1450. World Archaeol. 26, 235-251 (2010).
    • (2010) World Archaeol , vol.26 , pp. 235-251
    • Browman, D.L.1
  • 12
    • 85035319068 scopus 로고    scopus 로고
    • The Maritime cultural landscape of northern Patagonia
    • N. Lira, The Maritime cultural landscape of northern Patagonia. J. Mari. Arch. 12, 199-221 (2017).
    • (2017) J. Mari. Arch , vol.12 , pp. 199-221
    • Lira, N.1
  • 15
    • 69749099417 scopus 로고    scopus 로고
    • Fast model-based estimation of ancestry in unrelated individuals
    • D. H. Alexander, J. Novembre, K. Lange, Fast model-based estimation of ancestry in unrelated individuals. Genome Res. 19, 1655-1664 (2009).
    • (2009) Genome Res , vol.19 , pp. 1655-1664
    • Alexander, D.H.1    Novembre, J.2    Lange, K.3
  • 18
    • 84869026948 scopus 로고    scopus 로고
    • Inference of population splits and mixtures from genomewide allele frequency data
    • J. K. Pickrell, J. K. Pritchard, Inference of population splits and mixtures from genomewide allele frequency data. PLOS Genet. 8, e1002967 (2012).
    • (2012) PLOS Genet , vol.8 , pp. e1002967
    • Pickrell, J.K.1    Pritchard, J.K.2
  • 26
    • 84961730126 scopus 로고    scopus 로고
    • Ancient DNA reveals selection acting on genes associated with hypoxia response in pre-Columbian Peruvian Highlanders in the last 8500 years
    • L. Fehren-Schmitz, L. Georges, Ancient DNA reveals selection acting on genes associated with hypoxia response in pre-Columbian Peruvian Highlanders in the last 8500 years. Sci. Rep. 6, 23485 (2016).
    • (2016) Sci. Rep , vol.6 , pp. 23485
    • Fehren-Schmitz, L.1    Georges, L.2
  • 32
    • 85020204136 scopus 로고    scopus 로고
    • J. T. Watson, R. Haas, Dental evidence for wild tuber processing among Titicaca Basin foragers 7000 ybp. Am. J. Phys. Anthropol. 164, 117-130 (2017).
    • (2017) Am. J. Phys. Anthropol , vol.164 , pp. 117-130
    • Watson, J.T.1    Haas, R.2
  • 34
    • 77955471305 scopus 로고    scopus 로고
    • Transcriptomic analysis of patients with tetralogy of Fallot reveals the effect of chronic hypoxia on myocardial gene expression
    • M. T. Ghorbel, M. Cherif, E. Jenkins, A. Mokhtari, D. Kenny, G. D. Angelini, M. Caputo, Transcriptomic analysis of patients with tetralogy of Fallot reveals the effect of chronic hypoxia on myocardial gene expression. J. Thorac. Cardiovasc. Surg. 140, 337-345.e26 (2010).
    • (2010) J. Thorac. Cardiovasc. Surg , vol.140 , pp. 337-345
    • Ghorbel, M.T.1    Cherif, M.2    Jenkins, E.3    Mokhtari, A.4    Kenny, D.5    Angelini, G.D.6    Caputo, M.7
  • 35
    • 77949735131 scopus 로고    scopus 로고
    • Hearts of Dystonia musculorum mice display normal morphological and histological features but show signs of cardiac stress
    • J. G. Boyer, K. Bhanot, R. Kothary, C. Boudreau-Lariviere, Hearts of Dystonia musculorum mice display normal morphological and histological features but show signs of cardiac stress. PLOS ONE 5, e9465 (2010).
    • (2010) PLOS ONE , vol.5 , pp. e9465
    • Boyer, J.G.1    Bhanot, K.2    Kothary, R.3    Boudreau-Lariviere, C.4
  • 36
  • 37
    • 56949100221 scopus 로고    scopus 로고
    • Vaccinia virus proteins activate human dendritic cells to induce T cell responses in vitro
    • S. Agrawal, S. Gupta, A. Agrawal, Vaccinia virus proteins activate human dendritic cells to induce T cell responses in vitro. Vaccine 27, 88-92 (2009).
    • (2009) Vaccine , vol.27 , pp. 88-92
    • Agrawal, S.1    Gupta, S.2    Agrawal, A.3
  • 38
    • 84858779229 scopus 로고    scopus 로고
    • HaploReg: A resource for exploring chromatin states, conservation, and regulatory motif alterations within sets of genetically linked variants
    • L. D. Ward, M. Kellis, HaploReg: A resource for exploring chromatin states, conservation, and regulatory motif alterations within sets of genetically linked variants. Nucleic Acids Res. 40, D930-D934 (2012).
    • (2012) Nucleic Acids Res , vol.40 , pp. D930-D934
    • Ward, L.D.1    Kellis, M.2
  • 41
    • 0033564136 scopus 로고    scopus 로고
    • Dystonin-deficient mice exhibit an intrinsic muscle weakness and an instability of skeletal muscle cytoarchitecture
    • G. Dalpe, M. Mathieu, A. Comtois, E. Zhu, S. Wasiak, Y. De Repentigny, N. Leclerc, R. Kothary, Dystonin-deficient mice exhibit an intrinsic muscle weakness and an instability of skeletal muscle cytoarchitecture. Dev. Biol. 210, 367-380 (1999).
    • (1999) Dev. Biol , vol.210 , pp. 367-380
    • Dalpe, G.1    Mathieu, M.2    Comtois, A.3    Zhu, E.4    Wasiak, S.5    Repentigny, Y.D.6    Leclerc, N.7    Kothary, R.8
  • 43
    • 0037417990 scopus 로고    scopus 로고
    • The maltaseglucoamylase gene: Common ancestry to sucrase-isomaltase with complementary starch digestion activities
    • U.S.A
    • B. L. Nichols, S. Avery, P. Sen, D. M. Swallow, D. Hahn, E. Sterchi, The maltaseglucoamylase gene: Common ancestry to sucrase-isomaltase with complementary starch digestion activities. Proc. Natl. Acad. Sci. U.S.A. 100, 1432-1437 (2003).
    • (2003) Proc. Natl. Acad. Sci , vol.100 , pp. 1432-1437
    • Nichols, B.L.1    Avery, S.2    Sen, P.3    Swallow, D.M.4    Hahn, D.5    Sterchi, E.6
  • 44
  • 48
    • 0007198069 scopus 로고
    • An appraisal of techniques with a new hemispheric estimate
    • H. F. Dobyns, An appraisal of techniques with a new hemispheric estimate. Curr. Anthropol. 7, 395-416 (1966).
    • (1966) Curr. Anthropol , vol.7 , pp. 395-416
    • Dobyns, H.F.1
  • 49
    • 85040102395 scopus 로고    scopus 로고
    • Assessing the relationship of ancient and modern populations
    • J. G. Schraiber, Assessing the relationship of ancient and modern populations. Genetics 208, 383-398 (2018).
    • (2018) Genetics , vol.208 , pp. 383-398
    • Schraiber, J.G.1
  • 50
    • 0024965218 scopus 로고
    • Disease and death in the New World
    • L. Roberts, Disease and death in the New World. Science 246, 1245-1247 (1989).
    • (1989) Science , vol.246 , pp. 1245-1247
    • Roberts, L.1
  • 52
    • 85027696802 scopus 로고    scopus 로고
    • Interleukin-36 cytokines may overcome microbial immune evasion strategies that inhibit interleukin-1 family signaling
    • eaan3589
    • L. E. Jensen, Interleukin-36 cytokines may overcome microbial immune evasion strategies that inhibit interleukin-1 family signaling. Sci. Signal. 10, eaan3589 (2017).
    • (2017) Sci. Signal , vol.10
    • Jensen, L.E.1
  • 53
    • 79960142368 scopus 로고    scopus 로고
    • Common SNPs/haplotypes in IL18R1 and IL18 genes are associated with variations in humoral immunity to smallpox vaccination in Caucasians and African Americans
    • I. H. Haralambieva, I. G. Ovsyannikova, N. Dhiman, R. B. Kennedy, M. O'Byrne, V. S. Pankratz, R. M. Jacobson, G. A. Poland, Common SNPs/haplotypes in IL18R1 and IL18 genes are associated with variations in humoral immunity to smallpox vaccination in Caucasians and African Americans. J. Infect. Dis. 204, 433-441 (2011).
    • (2011) J. Infect. Dis , vol.204 , pp. 433-441
    • Haralambieva, I.H.1    Ovsyannikova, I.G.2    Dhiman, N.3    Kennedy, R.B.4    O'Byrne, M.5    Pankratz, V.S.6    Jacobson, R.M.7    Poland, G.A.8
  • 55
    • 77956285690 scopus 로고    scopus 로고
    • Illumina sequencing library preparation for highly multiplexed target capture and sequencing
    • pdb.prot5448 2010
    • M. Meyer, M. Kircher, Illumina sequencing library preparation for highly multiplexed target capture and sequencing. Cold Spring Harb. Protoc. 2010, pdb.prot5448 (2010).
    • (2010) Cold Spring Harb. Protoc
    • Meyer, M.1    Kircher, M.2
  • 58
    • 84868695684 scopus 로고    scopus 로고
    • NRE: A tool for exploring neutral loci in the human genome
    • L. Arbiza, E. Zhong, A. Keinan, NRE: A tool for exploring neutral loci in the human genome. BMC Bioinformatics 13, 301 (2012).
    • (2012) BMC Bioinformatics , vol.13 , pp. 301
    • Arbiza, L.1    Zhong, E.2    Keinan, A.3
  • 59
    • 85042375087 scopus 로고    scopus 로고
    • CNVcaller: Highly efficient and widely applicable software for detecting copy number variations in large populations
    • X. Wang, Z. Zheng, Y. Cai, T. Chen, C. Li, W. Fu, Y. Jiang, CNVcaller: Highly efficient and widely applicable software for detecting copy number variations in large populations. GigaScience 6, 1-12 (2017).
    • (2017) GigaScience , vol.6 , pp. 1-12
    • Wang, X.1    Zheng, Z.2    Cai, Y.3    Chen, T.4    Li, C.5    Fu, W.6    Jiang, Y.7
  • 60
    • 85024908705 scopus 로고    scopus 로고
    • Copy number variation of human AMY1 is a minor contributor to variation in salivary amylase expression and activity
    • D. Carpenter, L. M. Mitchell, J. A. L. Armour, Copy number variation of human AMY1 is a minor contributor to variation in salivary amylase expression and activity. Hum. Genomics 11, 2 (2017).
    • (2017) Hum. Genomics , vol.11 , pp. 2
    • Carpenter, D.1    Mitchell, L.M.2    Armour, J.A.L.3
  • 64
    • 85028331050 scopus 로고    scopus 로고
    • Visualizing the geography of genetic variants
    • J. H. Marcus, J. Novembre, Visualizing the geography of genetic variants. Bioinformatics 33, 594-595 (2017).
    • (2017) Bioinformatics , vol.33 , pp. 594-595
    • Marcus, J.H.1    Novembre, J.2
  • 66
    • 85056324756 scopus 로고    scopus 로고
    • Bchron: Radiocarbon dating, age-depth modelling, relative sea level rate estimation
    • A. Parnell, Bchron: Radiocarbon dating, age-depth modelling, relative sea level rate estimation, and non-parametric phase modelling (2016); https://CRAN.R-project.org/package=Bchron.
    • (2016) And Non-parametric Phase Modelling
    • Parnell, A.1
  • 69
    • 0021826794 scopus 로고
    • Dental wear in the Libben population: Its functional pattern and role in the determination of adult skeletal age at death
    • C. O. Lovejoy, Dental wear in the Libben population: Its functional pattern and role in the determination of adult skeletal age at death. Am. J. Phys. Anthropol. 68, 47-56 (1985).
    • (1985) Am. J. Phys. Anthropol , vol.68 , pp. 47-56
    • Lovejoy, C.O.1
  • 70
    • 0000388580 scopus 로고
    • Reporting of 14C data
    • M. Stuiver, H. A. Polach, Reporting of 14C data. Radiocarbon 19, 355-363 (1977).
    • (1977) Radiocarbon , vol.19 , pp. 355-363
    • Stuiver, M.1    Polach, H.A.2
  • 71
    • 84958153152 scopus 로고    scopus 로고
    • AdapterRemoval v2: Rapid adapter trimming, identification, and read merging
    • M. Schubert, S. Lindgreen, L. Orlando, AdapterRemoval v2: Rapid adapter trimming, identification, and read merging. BMC. Res. Notes 9, 88 (2016).
    • (2016) BMC. Res. Notes , vol.9 , pp. 88
    • Schubert, M.1    Lindgreen, S.2    Orlando, L.3
  • 72
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • H. Li, R. Durbin, Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 74
    • 84879910635 scopus 로고    scopus 로고
    • MapDamage2.0: Fast approximate Bayesian estimates of ancient DNA damage parameters
    • H. Jonsson, A. Ginolhac, M. Schubert, P. L. F. Johnson, L. Orlando, mapDamage2.0: Fast approximate Bayesian estimates of ancient DNA damage parameters. Bioinformatics 29, 1682-1684 (2013).
    • (2013) Bioinformatics , vol.29 , pp. 1682-1684
    • Jonsson, H.1    Ginolhac, A.2    Schubert, M.3    Johnson, P.L.F.4    Orlando, L.5
  • 79
    • 67651222400 scopus 로고    scopus 로고
    • A flexible and accurate genotype imputation method for the next generation of genome-wide association studies
    • B. N. Howie, P. Donnelly, J. Marchini, A flexible and accurate genotype imputation method for the next generation of genome-wide association studies. PLOS Genet. 5, e1000529 (2009).
    • (2009) PLOS Genet , vol.5 , pp. e1000529
    • Howie, B.N.1    Donnelly, P.2    Marchini, J.3
  • 80
    • 85027522651 scopus 로고    scopus 로고
    • SG-ADVISER mtDNA: A web server for mitochondrial DNA annotation with data from 200 samples of a healthy aging cohort
    • M. Rueda, A. Torkamani, SG-ADVISER mtDNA: A web server for mitochondrial DNA annotation with data from 200 samples of a healthy aging cohort. BMC Bioinformatics 18, 373 (2017).
    • (2017) BMC Bioinformatics , vol.18 , pp. 373
    • Rueda, M.1    Torkamani, A.2
  • 82
    • 84943738237 scopus 로고    scopus 로고
    • Schmutzi: Estimation of contamination and endogenous mitochondrial consensus calling for ancient DNA
    • G
    • G. Renaud, V. Slon, A. T. Duggan, J. Kelso, Schmutzi: Estimation of contamination and endogenous mitochondrial consensus calling for ancient DNA. Genome Biol. 16, 224 (2015).
    • (2015) Genome Biol , vol.16 , pp. 224
    • Renaud, G.1    Slon, V.2    Duggan, A.T.3    Kelso, J.4
  • 83
    • 33746512512 scopus 로고    scopus 로고
    • Principal components analysis corrects for stratification in genome-wide association studies
    • A. L. Price, N. J. Patterson, R. M. Plenge, M. E. Weinblatt, N. A. Shadick, D. Reich, Principal components analysis corrects for stratification in genome-wide association studies. Nat. Genet. 38, 904-909 (2006).
    • (2006) Nat. Genet , vol.38 , pp. 904-909
    • Price, A.L.1    Patterson, N.J.2    Plenge, R.M.3    Weinblatt, M.E.4    Shadick, N.A.5    Reich, D.6
  • 85
    • 84992215195 scopus 로고    scopus 로고
    • Pong: Fast analysis and visualization of latent clusters in population genetic data
    • A. A. Behr, K. Z. Liu, G. Liu-Fang, P. Nakka, S. Ramachandran, pong: Fast analysis and visualization of latent clusters in population genetic data. Bioinformatics 32, 2817-2823 (2016).
    • (2016) Bioinformatics , vol.32 , pp. 2817-2823
    • Behr, A.A.1    Liu, K.Z.2    Liu-Fang, G.3    Nakka, P.4    Ramachandran, S.5
  • 86
    • 0021566877 scopus 로고
    • Estimating F-statistics for the analysis of population structure
    • B. S. Weir, C. C. Cockerham, Estimating F-statistics for the analysis of population structure. Evolution 38, 1358-1370 (1984).
    • (1984) Evolution , vol.38 , pp. 1358-1370
    • Weir, B.S.1    Cockerham, C.C.2
  • 87
    • 84892684329 scopus 로고    scopus 로고
    • Reconstructing native American migrations from whole-genome and whole-exome data
    • S. Gravel, F. Zakharia, A. Moreno-Estrada, J. K. Byrnes, M. Muzzio, J. L. Rodriguez-Flores, E. E. Kenny, C. R. Gignoux, B. K. Maples, W. Guiblet, J. Dutil, M. Via, K. Sandoval, G. Bedoya; 1000 Genomes Project, T. K. Oleksyk
    • A. Ruiz-Linares, E. G. Burchard, J. C. Martinez-Cruzado, C. D. Bustamante, Reconstructing native american migrations from whole-genome and whole-exome data. PLOS Genet. 9, e1004023 (2013).
    • (2013) PLOS Genet , vol.9 , pp. e1004023
    • Ruiz-Linares, A.1    Burchard, E.G.2    Martinez-Cruzado, J.C.3    Bustamante, C.D.4
  • 88
    • 33845445318 scopus 로고    scopus 로고
    • The depopulation of Hispanic America after the conquest
    • M. Livi-Bacci, The depopulation of Hispanic America after the conquest. Pop. Dev. Rev. 32, 199-232 (2006).
    • (2006) Pop. Dev. Rev , vol.32 , pp. 199-232
    • Livi-Bacci, M.1


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