-
1
-
-
85040467287
-
Terminal Pleistocene Alaskan genome reveals first founding population of Native Americans
-
pmid: 29323294
-
J. V. Moreno-Mayar et al., Terminal Pleistocene Alaskan genome reveals first founding population of Native Americans. Nature 553, 203–207 (2018). doi: 10.1038/nature25173; pmid: 29323294
-
(2018)
Nature
, vol.553
, pp. 203-207
-
-
Moreno-Mayar, J.V.1
-
2
-
-
84939864401
-
Genomic evidence for the Pleistocene and recent population history of Native Americans
-
pmid: 26198033
-
M. Raghavan et al., Genomic evidence for the Pleistocene and recent population history of Native Americans. Science 349, aab3884–aab3884 (2015). doi: 10.1126/science.aab3884; pmid: 26198033
-
(2015)
Science
, vol.349
, pp. aab3884
-
-
Raghavan, M.1
-
3
-
-
84893961036
-
The genome of a Late Pleistocene human from a Clovis burial site in western Montana
-
pmid: 24522598
-
M. Rasmussen et al., The genome of a Late Pleistocene human from a Clovis burial site in western Montana. Nature 506, 225–229 (2014). doi: 10.1038/nature13025; pmid: 24522598
-
(2014)
Nature
, vol.506
, pp. 225-229
-
-
Rasmussen, M.1
-
4
-
-
84865120805
-
Reconstructing Native American population history
-
pmid: 22801491
-
D. Reich et al., Reconstructing Native American population history. Nature 488, 370–374 (2012). doi: 10.1038/ nature11258; pmid: 22801491
-
(2012)
Nature
, vol.488
, pp. 370-374
-
-
Reich, D.1
-
5
-
-
29444440428
-
Cranial morphology of early Americans from Lagoa Santa, Brazil: Implications for the settlement of the New World
-
pmid: 16344464
-
W. A. Neves, M. Hubbe, Cranial morphology of early Americans from Lagoa Santa, Brazil: Implications for the settlement of the New World. Proc. Natl. Acad. Sci. U.S.A. 102, 18309–18314 (2005). doi: 10.1073/pnas.0507185102; pmid: 16344464
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 18309-18314
-
-
Neves, W.A.1
Hubbe, M.2
-
6
-
-
84940952798
-
Genetic evidence for two founding populations of the Americas
-
pmid: 26196601
-
P. Skoglund et al., Genetic evidence for two founding populations of the Americas. Nature 525, 104–108 (2015). pmid: 26196601
-
(2015)
Nature
, vol.525
, pp. 104-108
-
-
Skoglund, P.1
-
7
-
-
85048178453
-
Ancient human parallel lineages within North America contributed to a coastal expansion
-
pmid: 29853687
-
C. L. Scheib et al., Ancient human parallel lineages within North America contributed to a coastal expansion. Science 360, 1024–1027 (2018). doi: 10.1126/science.aar6851; pmid: 29853687
-
(2018)
Science
, vol.360
, pp. 1024-1027
-
-
Scheib, C.L.1
-
8
-
-
84973892872
-
Ancient mitochondrial DNA provides high-resolution time scale of the peopling of the Americas
-
pmid: 27051878
-
B. Llamas et al., Ancient mitochondrial DNA provides high-resolution time scale of the peopling of the Americas. Sci. Adv. 2, e1501385–e1501385 (2016). doi: 10.1126/sciadv.1501385; pmid: 27051878
-
(2016)
Sci. Adv.
, vol.2
, pp. e1501385
-
-
Llamas, B.1
-
9
-
-
85017636183
-
Ancient individuals from the North American Northwest Coast reveal 10,000 years of regional genetic continuity
-
pmid: 28377518
-
J. Lindo et al., Ancient individuals from the North American Northwest Coast reveal 10,000 years of regional genetic continuity. Proc. Natl. Acad. Sci. U.S.A. 114, 4093–4098 (2017). doi: 10.1073/pnas.1620410114; pmid: 28377518
-
(2017)
Proc. Natl. Acad. Sci. U.S.A.
, vol.114
, pp. 4093-4098
-
-
Lindo, J.1
-
10
-
-
84937475681
-
The ancestry and affiliations of Kennewick Man
-
pmid: 26087396
-
M. Rasmussen et al., The ancestry and affiliations of Kennewick Man. Nature 523, 455–458 (2015). pmid: 26087396
-
(2015)
Nature
, vol.523
, pp. 455-458
-
-
Rasmussen, M.1
-
11
-
-
85045974498
-
Advancing the ethics of paleogenomics
-
pmid: 29700256
-
J. Bardill et al., Advancing the ethics of paleogenomics. Science 360, 384–385 (2018). doi: 10.1126/science.aaq1131; pmid: 29700256
-
(2018)
Science
, vol.360
, pp. 384-385
-
-
Bardill, J.1
-
12
-
-
85050790273
-
A framework for enhancing ethical genomic research with Indigenous communities
-
pmid: 30054469
-
K. G. Claw et al., A framework for enhancing ethical genomic research with Indigenous communities. Nat. Commun. 9, 2957 (2018). doi: 10.1038/s41467-018-05188-3; pmid: 30054469
-
(2018)
Nat. Commun.
, vol.9
, pp. 2957
-
-
Claw, K.G.1
-
13
-
-
84946944974
-
The complete mitogenome of a 500-year-old Inca child mummy
-
pmid: 26561991
-
A. Gómez-Carballa et al., The complete mitogenome of a 500-year-old Inca child mummy. Sci. Rep. 5, 16462 (2015). doi: 10.1038/srep16462; pmid: 26561991
-
(2015)
Sci. Rep.
, vol.5
, pp. 16462
-
-
Gómez-Carballa, A.1
-
14
-
-
84887538928
-
IntCal13 and Marine13 radiocarbon age calibration curves 0–50,000 years cal BP
-
P. J. Reimer et al., IntCal13 and Marine13 Radiocarbon Age Calibration Curves 0–50,000 Years cal BP. Radiocarbon 55, 1869–1887 (2013). doi: 10.2458/azu_js_rc.55.16947
-
(2013)
Radiocarbon
, vol.55
, pp. 1869-1887
-
-
Reimer, P.J.1
-
15
-
-
84982795852
-
A genomic view of the peopling of the Americas
-
pmid: 27507099
-
P. Skoglund, D. Reich, A genomic view of the peopling of the Americas. Curr. Opin. Genet. Dev. 41, 27–35 (2016). doi: 10.1016/j.gde.2016.06.016; pmid: 27507099
-
(2016)
Curr. Opin. Genet. Dev.
, vol.41
, pp. 27-35
-
-
Skoglund, P.1
Reich, D.2
-
16
-
-
77950862213
-
Removal of deaminated cytosines and detection of in vivo methylation in ancient DNA
-
pmid: 20028723
-
A. W. Briggs et al., Removal of deaminated cytosines and detection of in vivo methylation in ancient DNA. Nucleic Acids Res. 38, e87–e87 (2010). doi: 10.1093/nar/gkp1163; pmid: 20028723
-
(2010)
Nucleic Acids Res
, vol.38
, pp. e87
-
-
Briggs, A.W.1
-
17
-
-
84908643330
-
Patterns of admixture and population structure in native populations of Northwest North America
-
pmid: 25122539
-
P. Verdu et al., Patterns of admixture and population structure in native populations of Northwest North America. PLOS Genet. 10, e1004530 (2014). doi: 10.1371/journal.pgen.1004530; pmid: 25122539
-
(2014)
PLOS Genet
, vol.10
, pp. e1004530
-
-
Verdu, P.1
-
18
-
-
69749099417
-
Fast model-based estimation of ancestry in unrelated individuals
-
pmid: 19648217
-
D. H. Alexander, J. Novembre, K. Lange, Fast model-based estimation of ancestry in unrelated individuals. Genome Res. 19, 1655–1664 (2009). doi: 10.1101/gr.094052.109; pmid: 19648217
-
(2009)
Genome Res
, vol.19
, pp. 1655-1664
-
-
Alexander, D.H.1
Novembre, J.2
Lange, K.3
-
19
-
-
84921823843
-
BaMMDS: A tool for assessing the ancestry of low-depth whole-genome data using multidimensional scaling (MDS)
-
pmid: 24974206
-
A.-S. Malaspinas et al., bammds: A tool for assessing the ancestry of low-depth whole-genome data using multidimensional scaling (MDS). Bioinformatics 30, 2962–2964 (2014). doi: 10.1093/bioinformatics/btu410; pmid: 24974206
-
(2014)
Bioinformatics
, vol.30
, pp. 2962-2964
-
-
Malaspinas, A.-S.1
-
20
-
-
84869057650
-
Ancient admixture in human history
-
pmid: 22960212
-
N. Patterson et al., Ancient admixture in human history. Genetics 192, 1065–1093 (2012). doi: 10.1534/ genetics.112.145037; pmid: 22960212
-
(2012)
Genetics
, vol.192
, pp. 1065-1093
-
-
Patterson, N.1
-
21
-
-
84969820697
-
The genetic history of Ice Age Europe
-
pmid: 27135931
-
Q. Fu et al., The genetic history of Ice Age Europe. Nature 534, 200–205 (2016). doi: 10.1038/nature17993; pmid: 27135931
-
(2016)
Nature
, vol.534
, pp. 200-205
-
-
Fu, Q.1
-
22
-
-
85041444292
-
Powerful inference with the D-Statistic on low-coverage whole-genome data
-
pmid: 29196497
-
S. Soraggi, C. Wiuf, A. Albrechtsen, Powerful inference with the D-Statistic on low-coverage whole-genome data. G3 (Bethesda) 8, 551–566 (2018). doi: 10.1534/g3.117.300192; pmid: 29196497
-
(2018)
G3 (Bethesda)
, vol.8
, pp. 551-566
-
-
Soraggi, S.1
Wiuf, C.2
Albrechtsen, A.3
-
23
-
-
84869026948
-
Inference of population splits and mixtures from genome-wide allele frequency data
-
pmid: 23166502
-
J. K. Pickrell, J. K. Pritchard, Inference of population splits and mixtures from genome-wide allele frequency data. PLOS Genet. 8, e1002967 (2012). doi: 10.1371/journal.pgen.1002967; pmid: 23166502
-
(2012)
PLOS Genet
, vol.8
, pp. e1002967
-
-
Pickrell, J.K.1
Pritchard, J.K.2
-
24
-
-
85013082995
-
Efficient computation of the joint sample frequency spectra for multiple populations
-
pmid: 28239248
-
J. A. Kamm, J. Terhorst, Y. S. Song, Efficient computation of the joint sample frequency spectra for multiple populations. J. Comput. Graph. Stat. 26, 182–194 (2017). doi: 10.1080/ 10618600.2016.1159212; pmid: 28239248
-
(2017)
J. Comput. Graph. Stat.
, vol.26
, pp. 182-194
-
-
Kamm, J.A.1
Terhorst, J.2
Song, Y.S.3
-
25
-
-
85049104708
-
Efficiently inferring the demographic history of many populations with allele count data
-
287268 Preprint. 23 March
-
J. A. Kamm, J. Terhorst, R. Durbin, Y. S. Song, Efficiently inferring the demographic history of many populations with allele count data. bioRxiv 287268 [Preprint]. 23 March 2018. doi: 10.1101/287268
-
(2018)
bioRxiv
-
-
Kamm, J.A.1
Terhorst, J.2
Durbin, R.3
Song, Y.S.4
-
26
-
-
85007071697
-
Robust and scalable inference of population history from hundreds of unphased whole genomes
-
pmid: 28024154
-
J. Terhorst, J. A. Kamm, Y. S. Song, Robust and scalable inference of population history from hundreds of unphased whole genomes. Nat. Genet. 49, 303–309 (2017). doi: 10.1038/ng.3748; pmid: 28024154
-
(2017)
Nat. Genet.
, vol.49
, pp. 303-309
-
-
Terhorst, J.1
Kamm, J.A.2
Song, Y.S.3
-
28
-
-
85057906037
-
-
T. Goebel, I. Buvit, Eds. Peopling of the Americas, Texas A&M Univ., ed. 1
-
C. E. Holmes, in From the Yenisei to the Yukon: Interpreting Lithic Assemblage Variability in Late Pleistocene/Early Holocene Beringia, T. Goebel, I. Buvit, Eds. (Peopling of the Americas, Texas A&M Univ., ed. 1, 2011).
-
(2011)
From The Yenisei to The Yukon: Interpreting Lithic Assemblage Variability in Late Pleistocene/Early Holocene Beringia
-
-
Holmes, C.E.1
-
29
-
-
85018938959
-
A working model of the deep relationships of diverse modern human genetic lineages outside of Africa
-
pmid: 28074030
-
M. Lipson, D. Reich, A working model of the deep relationships of diverse modern human genetic lineages outside of Africa. Mol. Biol. Evol. 34, 889–902 (2017). pmid: 28074030
-
(2017)
Mol. Biol. Evol.
, vol.34
, pp. 889-902
-
-
Lipson, M.1
Reich, D.2
-
30
-
-
84892367625
-
Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans
-
pmid: 24256729
-
M. Raghavan et al., Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans. Nature 505, 87–91 (2014). doi: 10.1038/nature12736; pmid: 24256729
-
(2014)
Nature
, vol.505
, pp. 87-91
-
-
Raghavan, M.1
-
31
-
-
85021333511
-
Admixturegraph: An R package for admixture graph manipulation and fitting
-
pmid: 28158333
-
K. Leppälä, S. V. Nielsen, T. Mailund, admixturegraph: An R package for admixture graph manipulation and fitting. Bioinformatics 33, 1738–1740 (2017). doi: 10.1093/ bioinformatics/btx048; pmid: 28158333
-
(2017)
Bioinformatics
, vol.33
, pp. 1738-1740
-
-
Leppälä, K.1
Nielsen, S.V.2
Mailund, T.3
-
33
-
-
39749105082
-
Beringian standstill and spread of Native American founders
-
pmid: 17786201
-
E. Tamm et al., Beringian standstill and spread of Native American founders. PLOS ONE 2, e829 (2007). doi: 10.1371/ journal.pone.0000829; pmid: 17786201
-
(2007)
PLOS ONE
, vol.2
, pp. e829
-
-
Tamm, E.1
-
34
-
-
84892567874
-
Reconciling pre-Columbian settlement hypotheses requires integrative, multidisciplinary, and model-bound approaches
-
pmid: 24398530
-
M. C. Bortolini, R. González-José, S. L. Bonatto, F. R. Santos, Reconciling pre-Columbian settlement hypotheses requires integrative, multidisciplinary, and model-bound approaches. Proc. Natl. Acad. Sci. U.S.A. 111, E213–E214 (2014). doi: 10.1073/pnas.1321197111; pmid: 24398530
-
(2014)
Proc. Natl. Acad. Sci. U.S.A.
, vol.111
, pp. E213-E214
-
-
Bortolini, M.C.1
González-José, R.2
Bonatto, S.L.3
Santos, F.R.4
-
35
-
-
85049612491
-
Evolutionary genomic dynamics of Peruvians before, during, and after the Inca Empire
-
pmid: 29946025
-
D. N. Harris et al., Evolutionary genomic dynamics of Peruvians before, during, and after the Inca Empire. Proc. Natl. Acad. Sci. U.S.A. 115, E6526–E6535 (2018). doi: 10.1073/ pnas.1720798115; pmid: 29946025
-
(2018)
Proc. Natl. Acad. Sci. U.S.A.
, vol.115
, pp. E6526-E6535
-
-
Harris, D.N.1
-
36
-
-
84992549202
-
Native American genomics and population histories
-
D. A. Bolnick, J. A. Raff, L. C. Springs, A. W. Reynolds, A. T. Miró-Herrans, Native American Genomics and Population Histories. Annu. Rev. Anthropol. 45, 319–340 (2016). doi: 10.1146/annurev-anthro-102215-100036
-
(2016)
Annu. Rev. Anthropol.
, vol.45
, pp. 319-340
-
-
Bolnick, D.A.1
Raff, J.A.2
Springs, L.C.3
Reynolds, A.W.4
Miró-Herrans, A.T.5
-
37
-
-
33845581895
-
Early Holocene human skeletal remains from Sumidouro Cave, Lagoa Santa, Brazil: History of discoveries, geological and chronological context, and comparative cranial morphology
-
pmid: 16996575
-
W. A. Neves, M. Hubbe, L. B. Piló, Early Holocene human skeletal remains from Sumidouro Cave, Lagoa Santa, Brazil: History of discoveries, geological and chronological context, and comparative cranial morphology. J. Hum. Evol. 52, 16–30 (2007). doi: 10.1016/j.jhevol.2006.07.012; pmid: 16996575
-
(2007)
J. Hum. Evol.
, vol.52
, pp. 16-30
-
-
Neves, W.A.1
Hubbe, M.2
Piló, L.B.3
-
38
-
-
0035143530
-
Variation among early North American crania
-
pmid: 11169904
-
R. L. Jantz, D. W. Owsley, Variation among early North American crania. Am. J. Phys. Anthropol. 114, 146–155 (2001). doi: 10.1002/1096-8644(200102)114:2<146::AIDAJPA1014>3.0.CO;2-E; pmid: 11169904
-
(2001)
Am. J. Phys. Anthropol.
, vol.114
, pp. 146-155
-
-
Jantz, R.L.1
Owsley, D.W.2
-
39
-
-
85024503877
-
Evolutionary population history of early Paleoamerican cranial morphology
-
pmid: 28261661
-
N. von Cramon-Taubadel, A. Strauss, M. Hubbe, Evolutionary population history of early Paleoamerican cranial morphology. Sci. Adv. 3, e1602289 (2017). doi: 10.1126/sciadv.1602289; pmid: 28261661
-
(2017)
Sci. Adv.
, vol.3
, pp. e1602289
-
-
Von Cramon-Taubadel, N.1
Strauss, A.2
Hubbe, M.3
-
40
-
-
0033368814
-
Lapa Vermelha IV hominid 1: Morphological affinities of the earliest known American
-
W. A. Neves, J. F. Powell, A. Prous, E. G. Ozolins, M. Blum, Lapa Vermelha IV Hominid 1: Morphological affinities of the earliest known American. Genet. Mol. Biol. 22, 461–469 (1999). doi: 10.1590/S1415-47571999000400001
-
(1999)
Genet. Mol. Biol.
, vol.22
, pp. 461-469
-
-
Neves, W.A.1
Powell, J.F.2
Prous, A.3
Ozolins, E.G.4
Blum, M.5
-
41
-
-
52149093840
-
The peopling of America: Craniofacial shape variation on a continental scale and its interpretation from an interdisciplinary view
-
pmid: 18481303
-
R. González-José, M. C. Bortolini, F. R. Santos, S. L. Bonatto, The peopling of America: Craniofacial shape variation on a continental scale and its interpretation from an interdisciplinary view. Am. J. Phys. Anthropol. 137, 175–187 (2008). doi: 10.1002/ajpa.20854; pmid: 18481303
-
(2008)
Am. J. Phys. Anthropol.
, vol.137
, pp. 175-187
-
-
González-José, R.1
Bortolini, M.C.2
Santos, F.R.3
Bonatto, S.L.4
-
42
-
-
85045941189
-
Genomic insights into the origin and diversification of late maritime hunter-gatherers from the Chilean Patagonia
-
pmid: 29632188
-
C. de la Fuente et al., Genomic insights into the origin and diversification of late maritime hunter-gatherers from the Chilean Patagonia. Proc. Natl. Acad. Sci. U.S.A. 115, E4006–E4012 (2018). doi: 10.1073/pnas.1715688115; pmid: 29632188
-
(2018)
Proc. Natl. Acad. Sci. U.S.A.
, vol.115
, pp. E4006-E4012
-
-
De La Fuente, C.1
-
43
-
-
85042903791
-
Origins and genetic legacies of the Caribbean Taino
-
pmid: 29463742
-
H. Schroeder et al., Origins and genetic legacies of the Caribbean Taino. Proc. Natl. Acad. Sci. U.S.A. 115, 2341–2346 (2018). doi: 10.1073/pnas.1716839115; pmid: 29463742
-
(2018)
Proc. Natl. Acad. Sci. U.S.A.
, vol.115
, pp. 2341-2346
-
-
Schroeder, H.1
-
44
-
-
79952085676
-
Middle-Holocene climates and human population densities in the Great Basin, western USA
-
L. A. Louderback, D. K. Grayson, M. Llobera, Middle-Holocene climates and human population densities in the Great Basin, western USA. Holocene 21, 366–373 (2011). doi: 10.1177/ 0959683610374888
-
(2011)
Holocene
, vol.21
, pp. 366-373
-
-
Louderback, L.A.1
Grayson, D.K.2
Llobera, M.3
-
46
-
-
85020938894
-
A composite window into human history
-
pmid: 28619897
-
N. N. Johannsen, G. Larson, D. J. Meltzer, M. Vander Linden, A composite window into human history. Science 356, 1118–1120 (2017). doi: 10.1126/science.aan0737; pmid: 28619897
-
(2017)
Science
, vol.356
, pp. 1118-1120
-
-
Johannsen, N.N.1
Larson, G.2
Meltzer, D.J.3
Vander Linden, M.4
-
49
-
-
84879283672
-
A late Pleistocene/Early Holocene archaeological 14C database for Central and South America: Palaeoenvironmental contexts and demographic interpretations
-
Eds
-
L. Bueno, G. Politis, L. Prates, J. Steele, Eds., A Late Pleistocene/Early Holocene Archaeological 14C Database for Central and South America: Palaeoenvironmental Contexts and Demographic Interpretations. Quat. Int. 301, 1–158 (2013).
-
(2013)
Quat. Int.
, vol.301
, pp. 1-158
-
-
Bueno, L.1
Politis, G.2
Prates, L.3
Steele, J.4
-
50
-
-
33847255950
-
Redefining the Age of Clovis: Implications for the peopling of the Americas
-
pmid: 17322060
-
M. R. Waters, T. W. Stafford Jr., Redefining the age of Clovis: Implications for the peopling of the Americas. Science 315, 1122–1126 (2007). doi: 10.1126/science.1137166; pmid: 17322060
-
(2007)
Science
, vol.315
, pp. 1122-1126
-
-
Waters, M.R.1
Stafford, T.W.2
-
52
-
-
44049095202
-
Monte Verde: Seaweed, food, medicine, and the peopling of South America
-
pmid: 18467586
-
T. D. Dillehay et al., Monte Verde: Seaweed, food, medicine, and the peopling of South America. Science 320, 784–786 (2008). doi: 10.1126/science.1156533; pmid: 18467586
-
(2008)
Science
, vol.320
, pp. 784-786
-
-
Dillehay, T.D.1
-
53
-
-
84969915981
-
Sinodonty, Sundadonty, and the Beringian Standstill model: Issues of timing and migrations into the New World
-
G. R. Scott et al., Sinodonty, Sundadonty, and the Beringian Standstill model: Issues of timing and migrations into the New World. Quat. Int. 466, 233–246 (2018). doi: 10.1016/ j.quaint.2016.04.027
-
(2018)
Quat. Int.
, vol.466
, pp. 233-246
-
-
Scott, G.R.1
-
54
-
-
84923363624
-
Social learning and technological evolution during the Clovis colonization of the New World
-
pmid: 25666759
-
M. I. Eren, B. Buchanan, M. J. O’Brien, Social learning and technological evolution during the Clovis colonization of the New World. J. Hum. Evol. 80, 159–170 (2015). doi: 10.1016/ j.jhevol.2015.01.002; pmid: 25666759
-
(2015)
J. Hum. Evol.
, vol.80
, pp. 159-170
-
-
Eren, M.I.1
Buchanan, B.2
O’Brien, M.J.3
-
55
-
-
85049363654
-
Reassessing the chronology of the archaeological site of Anzick
-
pmid: 29915063
-
L. Becerra-Valdivia et al., Reassessing the chronology of the archaeological site of Anzick. Proc. Natl. Acad. Sci. U.S.A. 115, 7000–7003 (2018). doi: 10.1073/pnas.1803624115; pmid: 29915063
-
(2018)
Proc. Natl. Acad. Sci. U.S.A.
, vol.115
, pp. 7000-7003
-
-
Becerra-Valdivia, L.1
-
56
-
-
84863765637
-
Clovis age Western Stemmed projectile points and human coprolites at the Paisley Caves
-
pmid: 22798611
-
D. L. Jenkins et al., Clovis age Western Stemmed projectile points and human coprolites at the Paisley Caves. Science 337, 223–228 (2012). doi: 10.1126/science.1218443; pmid: 22798611
-
(2012)
Science
, vol.337
, pp. 223-228
-
-
Jenkins, D.L.1
-
57
-
-
85029004428
-
Genetic structure of first nation communities in the Pacific Northwest
-
pmid: 28826319
-
C. E. Hughes et al., Genetic Structure of First Nation Communities in the Pacific Northwest. Hum. Biol. 88, 251–263 (2016). doi: 10.13110/humanbiology.88.4.0251; pmid: 28826319
-
(2016)
Hum. Biol.
, vol.88
, pp. 251-263
-
-
Hughes, C.E.1
-
58
-
-
85018226075
-
Tracing the peopling of the world through genomics
-
pmid: 28102248
-
R. Nielsen et al., Tracing the peopling of the world through genomics. Nature 541, 302–310 (2017). doi: 10.1038/ nature21347; pmid: 28102248
-
(2017)
Nature
, vol.541
, pp. 302-310
-
-
Nielsen, R.1
-
59
-
-
84863101693
-
Adapterremoval: Easy cleaning of next-generation sequencing reads
-
pmid: 22748135
-
S. Lindgreen, AdapterRemoval: Easy cleaning of next-generation sequencing reads. BMC Res. Notes 5, 337 (2012). doi: 10.1186/1756-0500-5-337; pmid: 22748135
-
(2012)
BMC Res. Notes
, vol.5
, pp. 337
-
-
Lindgreen, S.1
-
60
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
pmid: 19451168
-
H. Li, R. Durbin, Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754–1760 (2009). doi: 10.1093/bioinformatics/btp324; pmid: 19451168
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
61
-
-
84860683374
-
Improving ancient DNA read mapping against modern reference genomes
-
pmid: 22574660
-
M. Schubert et al., Improving ancient DNA read mapping against modern reference genomes. BMC Genomics 13, 178 (2012). doi: 10.1186/1471-2164-13-178; pmid: 22574660
-
(2012)
BMC Genomics
, vol.13
, pp. 178
-
-
Schubert, M.1
-
62
-
-
85057933904
-
-
Picard, http://picard.sourceforge.net.
-
-
-
-
63
-
-
79955483667
-
A framework for variation discovery and genotyping using next-generation DNA sequencing data
-
pmid: 21478889
-
M. A. DePristo et al., A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat. Genet. 43, 491–498 (2011). doi: 10.1038/ng.806; pmid: 21478889
-
(2011)
Nat. Genet.
, vol.43
, pp. 491-498
-
-
DePristo, M.A.1
-
64
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
pmid: 19505943
-
H. Li et al., The Sequence Alignment/Map format and SAMtools. Bioinformatics 25, 2078–2079 (2009). doi: 10.1093/bioinformatics/btp352; pmid: 19505943
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
-
65
-
-
67651222400
-
A flexible and accurate genotype imputation method for the next generation of genome-wide association studies
-
pmid: 19543373
-
B. N. Howie, P. Donnelly, J. Marchini, A flexible and accurate genotype imputation method for the next generation of genome-wide association studies. PLOS Genet. 5, e1000529 (2009). doi: 10.1371/journal.pgen.1000529; pmid: 19543373
-
(2009)
PLOS Genet
, vol.5
, pp. e1000529
-
-
Howie, B.N.1
Donnelly, P.2
Marchini, J.3
-
66
-
-
84863845193
-
Genotype imputation with thousands of genomes
-
pmid: 22384356
-
B. Howie, J. Marchini, M. Stephens, Genotype imputation with thousands of genomes. G3 (Bethesda) 1, 457–470 (2011). doi: 10.1534/g3.111.001198; pmid: 22384356
-
(2011)
G3 (Bethesda)
, vol.1
, pp. 457-470
-
-
Howie, B.1
Marchini, J.2
Stephens, M.3
-
67
-
-
85057920040
-
-
SNPable Regions, http://lh3lh3.users.sourceforge.net/snpable.shtml.
-
SNPable Regions
-
-
-
68
-
-
84943171338
-
A global reference for human genetic variation
-
pmid: 26432245
-
The 1000 Genomes Project Consortium, A global reference for human genetic variation. Nature 526, 68–74 (2015). doi: 10.1038/nature15393; pmid: 26432245
-
(2015)
Nature
, vol.526
, pp. 68-74
-
-
-
69
-
-
84876151646
-
A revised timescale for human evolution based on ancient mitochondrial genomes
-
pmid: 23523248
-
Q. Fu et al., A revised timescale for human evolution based on ancient mitochondrial genomes. Curr. Biol. 23, 553–559 (2013). doi: 10.1016/j.cub.2013.02.044; pmid: 23523248
-
(2013)
Curr. Biol.
, vol.23
, pp. 553-559
-
-
Fu, Q.1
-
70
-
-
84920729412
-
AnGSD: Analysis of next generation sequencing data
-
pmid: 25420514
-
T. S. Korneliussen, A. Albrechtsen, R. Nielsen, ANGSD: Analysis of Next Generation Sequencing Data. BMC Bioinformatics 15, 356 (2014). doi: 10.1186/s12859-014-0356-4; pmid: 25420514
-
(2014)
BMC Bioinformatics
, vol.15
, pp. 356
-
-
Korneliussen, T.S.1
Albrechtsen, A.2
Nielsen, R.3
-
71
-
-
84964815211
-
Joint estimation of contamination, error and demography for nuclear DNA from ancient humans
-
pmid: 27049965
-
F. Racimo, G. Renaud, M. Slatkin, Joint Estimation of Contamination, Error and Demography for Nuclear DNA from Ancient Humans. PLOS Genet. 12, e1005972 (2016). doi: 10.1371/journal.pgen.1005972; pmid: 27049965
-
(2016)
PLOS Genet
, vol.12
, pp. e1005972
-
-
Racimo, F.1
Renaud, G.2
Slatkin, M.3
-
73
-
-
85056346614
-
The genetic prehistory of the Andean highlands: 7000 years BP though European contact
-
J. Lindo et al., The genetic prehistory of the Andean highlands: 7000 years BP though European contact. Sci. Adv. 4, eaau4921 (2018). doi: 10.1126/sciadv.aau4921
-
(2018)
Sci. Adv.
, vol.4
, pp. eaau4921
-
-
Lindo, J.1
-
74
-
-
85056451563
-
Reconstructing the deep population history of Central and South America
-
C. Posth et al., Reconstructing the Deep Population History of Central and South America. Cell 175, 1185–1197 (2018). doi: 10.1016/j.cell.2018.10.027
-
(2018)
Cell
, vol.175
, pp. 1185-1197
-
-
Posth, C.1
|