메뉴 건너뛰기




Volumn 114, Issue 16, 2017, Pages 4093-4098

Ancient individuals from the North American Northwest Coast reveal 10,000 years of regional genetic continuity

(16)  Lindo, John a   Achilli, Alessandro b   Perego, Ugo A b   Archer, David c   Valdiosera, Cristina d,e   Petzelt, Barbara f   Mitchell, Joycelynn f   Worl, Rosita g   Dixon, E James h   Fifield, Terence E i,j   Rasmussen, Morten e,k   Willerslev, Eske e,l,m   Cybulski, Jerome S n,o,p   Kemp, Brian M q   DeGiorgio, Michael r   Malhi, Ripan S s  


Author keywords

Ancient DNA; Indigenous; Native American; Paleogenomics; Peopling

Indexed keywords

ANCIENT DNA; MITOCHONDRIAL DNA;

EID: 85017636183     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1620410114     Document Type: Article
Times cited : (79)

References (48)
  • 1
    • 33645812424 scopus 로고
    • Routes: Alternate migration corridors for early man in North America
    • Fladmark KR (1979) Routes: Alternate migration corridors for early man in North America. Am Antiq 44:55-69.
    • (1979) Am Antiq , vol.44 , pp. 55-69
    • Fladmark, K.R.1
  • 2
    • 43249141054 scopus 로고    scopus 로고
    • The kelp highway hypothesis: Marine ecology, the coastal migration theory, and the peopling of the Americas
    • Erlandson JM, et al. (2007) The kelp highway hypothesis: Marine ecology, the coastal migration theory, and the peopling of the Americas. J Island Coast Archaeol 2:161-174.
    • (2007) J Island Coast Archaeol , vol.2 , pp. 161-174
    • Erlandson, J.M.1
  • 4
    • 3442886310 scopus 로고    scopus 로고
    • Mitochondrial DNA and y chromosome diversity and the peopling of the Americas: Evolutionary and demographic evidence
    • Schurr TG, Sherry ST (2004) Mitochondrial DNA and Y chromosome diversity and the peopling of the Americas: Evolutionary and demographic evidence. Am J Hum Biol 16:420-439.
    • (2004) Am J Hum Biol , vol.16 , pp. 420-439
    • Schurr, T.G.1    Sherry, S.T.2
  • 6
    • 84883332476 scopus 로고    scopus 로고
    • Reconciling migration models to the Americas with the variation of North American native mitogenomes
    • Achilli A, et al. (2013) Reconciling migration models to the Americas with the variation of North American native mitogenomes. Proc Natl Acad Sci USA 110:14308-14313.
    • (2013) Proc Natl Acad Sci USA , vol.110 , pp. 14308-14313
    • Achilli, A.1
  • 7
    • 84865120805 scopus 로고    scopus 로고
    • Reconstructing Native American population history
    • Reich D, et al. (2012) Reconstructing Native American population history. Nature 488: 370-374.
    • (2012) Nature , vol.488 , pp. 370-374
    • Reich, D.1
  • 8
    • 84907279761 scopus 로고    scopus 로고
    • The genetic prehistory of the New World Arctic
    • Raghavan M, et al. (2014) The genetic prehistory of the New World Arctic. Science 345:1255832.
    • (2014) Science , vol.345 , pp. 1255832
    • Raghavan, M.1
  • 10
    • 0016287048 scopus 로고
    • Bone foreshafts from a clovis burial in southwestern Montana
    • Lahren L, Bonnichsen R (1974) Bone foreshafts from a clovis burial in southwestern montana. Science 186:147-150.
    • (1974) Science , vol.186 , pp. 147-150
    • Lahren, L.1    Bonnichsen, R.2
  • 11
    • 84893961036 scopus 로고    scopus 로고
    • The genome of a Late Pleistocene human from a Clovis burial site in western Montana
    • Rasmussen M, et al. (2014) The genome of a Late Pleistocene human from a Clovis burial site in western Montana. Nature 506:225-229.
    • (2014) Nature , vol.506 , pp. 225-229
    • Rasmussen, M.1
  • 12
    • 33947500845 scopus 로고    scopus 로고
    • Genetic analysis of early holocene skeletal remains from Alaska and its implications for the settlement of the Americas
    • Kemp BM, et al. (2007) Genetic analysis of early holocene skeletal remains from Alaska and its implications for the settlement of the Americas. Am J Phys Anthropol 132:605-621.
    • (2007) Am J Phys Anthropol , vol.132 , pp. 605-621
    • Kemp, B.M.1
  • 13
    • 84879743551 scopus 로고    scopus 로고
    • Ancient DNA analysis of mid-holocene individuals from the Northwest Coast of North America reveals different evolutionary paths for mitogenomes
    • Cui Y, et al. (2013) Ancient DNA analysis of mid-holocene individuals from the Northwest Coast of North America reveals different evolutionary paths for mitogenomes. PLoS One 8:e66948.
    • (2013) PLoS One , vol.8 , pp. e66948
    • Cui, Y.1
  • 14
    • 84937475681 scopus 로고    scopus 로고
    • The ancestry and affiliations of Kennewick Man
    • Rasmussen M, et al. (2015) The ancestry and affiliations of Kennewick Man. Nature 523:455-458.
    • (2015) Nature , vol.523 , pp. 455-458
    • Rasmussen, M.1
  • 15
    • 59249098163 scopus 로고    scopus 로고
    • Sequences from first settlers reveal rapid evolution in Icelandic mtDNA pool
    • Helgason A, et al. (2009) Sequences from first settlers reveal rapid evolution in Icelandic mtDNA pool. PLoS Genet 5:e1000343.
    • (2009) PLoS Genet , vol.5 , pp. e1000343
    • Helgason, A.1
  • 16
    • 84946781140 scopus 로고    scopus 로고
    • Two contemporaneous mitogenomes from terminal Pleistocene burials in eastern Beringia
    • Tackney JC, et al. (2015) Two contemporaneous mitogenomes from terminal Pleistocene burials in eastern Beringia. Proc Natl Acad Sci USA 112:13833-13838.
    • (2015) Proc Natl Acad Sci USA , vol.112 , pp. 13833-13838
    • Tackney, J.C.1
  • 17
    • 84869026948 scopus 로고    scopus 로고
    • Inference of population splits and mixtures from genome-wide allele frequency data
    • Pickrell JK, Pritchard JK (2012) Inference of population splits and mixtures from genome-wide allele frequency data. PLoS Genet 8:e1002967.
    • (2012) PLoS Genet , vol.8 , pp. e1002967
    • Pickrell, J.K.1    Pritchard, J.K.2
  • 18
    • 34848827224 scopus 로고    scopus 로고
    • Patterns of damage in genomic DNA sequences from a Neandertal
    • Briggs AW, et al. (2007) Patterns of damage in genomic DNA sequences from a Neandertal. Proc Natl Acad Sci USA 104:14616-14621.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 14616-14621
    • Briggs, A.W.1
  • 19
    • 84892367625 scopus 로고    scopus 로고
    • Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans
    • RaghavanM, et al. (2014) Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans. Nature 505:87-91.
    • (2014) Nature , vol.505 , pp. 87-91
    • Raghavan, M.1
  • 20
    • 84869057650 scopus 로고    scopus 로고
    • Ancient admixture in human history
    • Patterson N, et al. (2012) Ancient admixture in human history. Genetics 192:1065-1093.
    • (2012) Genetics , vol.192 , pp. 1065-1093
    • Patterson, N.1
  • 22
    • 84862571480 scopus 로고    scopus 로고
    • Clan, language, and migration history has shaped genetic diversity in Haida and Tlingit populations from Southeast Alaska
    • Schurr TG, et al.; Genographic Consortium (2012) Clan, language, and migration history has shaped genetic diversity in Haida and Tlingit populations from Southeast Alaska. Am J Phys Anthropol 148:422-435.
    • (2012) Am J Phys Anthropol , vol.148 , pp. 422-435
    • Schurr, T.G.1
  • 23
    • 84984629864 scopus 로고    scopus 로고
    • Postglacial viability and colonization in North America's ice-free corridor
    • Pedersen MW, et al. (2016) Postglacial viability and colonization in North America's ice-free corridor. Nature 537:45-49.
    • (2016) Nature , vol.537 , pp. 45-49
    • Pedersen, M.W.1
  • 24
    • 84872136423 scopus 로고    scopus 로고
    • Late Pleistocene colonization of North America from northeast Asia: New insights from large-scale paleogeographic reconstructions
    • Dixon EJ (2013) Late Pleistocene colonization of North America from northeast Asia: New insights from large-scale paleogeographic reconstructions. Quat Int 285:57-67.
    • (2013) Quat Int , vol.285 , pp. 57-67
    • Dixon, E.J.1
  • 25
    • 84908643330 scopus 로고    scopus 로고
    • Patterns of admixture and population structure in native populations of Northwest North America
    • Verdu P, et al. (2014) Patterns of admixture and population structure in native populations of Northwest North America. PLoS Genet 10:e1004530.
    • (2014) PLoS Genet , vol.10 , pp. e1004530
    • Verdu, P.1
  • 26
    • 84943738237 scopus 로고    scopus 로고
    • Schmutzi: Estimation of contamination and endogenous mitochondrial consensus calling for ancient DNA
    • Renaud G, Slon V, Duggan AT, Kelso J (2015) Schmutzi: Estimation of contamination and endogenous mitochondrial consensus calling for ancient DNA. Genome Biol 16:224.
    • (2015) Genome Biol , vol.16 , pp. 224
    • Renaud, G.1    Slon, V.2    Duggan, A.T.3    Kelso, J.4
  • 27
    • 84881242231 scopus 로고    scopus 로고
    • Accurate sex identification of ancient human remains using DNA shotgun sequencing
    • Skoglund P, Stora J, Gotherstrom A, JakobssonM (2013) Accurate sex identification of ancient human remains using DNA shotgun sequencing. J Archaeol Sci 40:4477-4482.
    • (2013) J Archaeol Sci , vol.40 , pp. 4477-4482
    • Skoglund, P.1    Stora, J.2    Gotherstrom, A.3    Jakobsson, M.4
  • 29
    • 77952136530 scopus 로고    scopus 로고
    • A draft sequence of the Neandertal genome
    • Green RE, et al. (2010) A draft sequence of the Neandertal genome. Science 328:710-722.
    • (2010) Science , vol.328 , pp. 710-722
    • Green, R.E.1
  • 30
    • 76749141381 scopus 로고    scopus 로고
    • Ancient human genome sequence of an extinct Palaeo-Eskimo
    • Rasmussen M, et al. (2010) Ancient human genome sequence of an extinct Palaeo-Eskimo. Nature 463:757-762.
    • (2010) Nature , vol.463 , pp. 757-762
    • Rasmussen, M.1
  • 31
    • 0003742867 scopus 로고    scopus 로고
    • Univ of New Mexico Press, Albuquerque, NM
    • Dixon EJ (1999) Bones, Boats, and Bison (Univ of New Mexico Press, Albuquerque, NM).
    • (1999) Bones, Boats, and Bison
    • Dixon, E.J.1
  • 32
    • 0012616536 scopus 로고    scopus 로고
    • The late Wisconsin vertebrate history of prince of Wales island, southeast Alaska
    • eds Schubert BW, Mead JI, Graham RW (Indiana Univ Press, Bloomington, IN)
    • Heaton TH, Grady F (2003) The late Wisconsin vertebrate history of Prince of Wales Island, Southeast Alaska. Ice Age Cave Faunas of North America, eds Schubert BW, Mead JI, Graham RW (Indiana Univ Press, Bloomington, IN), pp 17-53.
    • (2003) Ice Age Cave Faunas of North America , pp. 17-53
    • Heaton, T.H.1    Grady, F.2
  • 33
    • 60950551914 scopus 로고    scopus 로고
    • Introduction: The prince rupert harbour project
    • ed Cybulski JS (Canadian Museum of Civilization, Quebec, Gatineau, QC, Canada)
    • MacDonald GF, Cybulski JS (2001) Introduction: The Prince Rupert Harbour Project. Perspectives on Northern Northwest Coast Prehistory, ed Cybulski JS (Canadian Museum of Civilization, Quebec, Gatineau, QC, Canada), pp 1-23.
    • (2001) Perspectives on Northern Northwest Coast Prehistory , pp. 1-23
    • MacDonald, G.F.1    Cybulski, J.S.2
  • 34
    • 39849095117 scopus 로고    scopus 로고
    • Village patterns and the emergence of ranked society in the Prince Rupert area
    • ed Cybulski JS (Canadian Museum of Civilization, Quebec, Gatineau, QC, Canada)
    • Archer D (2001) Village patterns and the emergence of ranked society in the Prince Rupert area. Perspectives on Northern Northwest Coast Prehistory, ed Cybulski JS (Canadian Museum of Civilization, Quebec, Gatineau, QC, Canada), pp 203-222.
    • (2001) Perspectives on Northern Northwest Coast Prehistory , pp. 203-222
    • Archer, D.1
  • 35
    • 84880351230 scopus 로고    scopus 로고
    • Further evaluation of the efficacy of contamination removal from bone surfaces
    • Barta JL, Monroe C, Kemp BM (2013) Further evaluation of the efficacy of contamination removal from bone surfaces. Forensic Sci Int 231:340-348.
    • (2013) Forensic Sci Int , vol.231 , pp. 340-348
    • Barta, J.L.1    Monroe, C.2    Kemp, B.M.3
  • 36
    • 84887367227 scopus 로고    scopus 로고
    • Can salmonids (Oncorhynchus spp.) be identified to species using vertebral morphometrics? A test using ancient DNA from Coffman Cove, Alaska
    • Moss ML, Judd KG, Kemp BM (2014) Can salmonids (Oncorhynchus spp.) be identified to species using vertebral morphometrics? A test using ancient DNA from Coffman Cove, Alaska. J Archaeol Sci 41:879-889.
    • (2014) J Archaeol Sci , vol.41 , pp. 879-889
    • Moss, M.L.1    Judd, K.G.2    Kemp, B.M.3
  • 37
    • 84995609188 scopus 로고    scopus 로고
    • A time transect of exomes from a Native American population before and after European contact
    • Lindo J, et al. (2016) A time transect of exomes from a Native American population before and after European contact. Nat Commun 7:13175.
    • (2016) Nat Commun , vol.7 , pp. 13175
    • Lindo, J.1
  • 38
    • 77956285690 scopus 로고    scopus 로고
    • Illumina sequencing library preparation for highly multiplexed target capture and sequencing
    • Meyer M, Kircher M (2010) Illumina sequencing library preparation for highly multiplexed target capture and sequencing. Cold Spring Harb Protoc 2010:pdb.prot5448.
    • (2010) Cold Spring Harb Protoc 2010:pdb.prot5448
    • Meyer, M.1    Kircher, M.2
  • 39
    • 84905049901 scopus 로고    scopus 로고
    • Trimmomatic: A flexible trimmer for Illumina sequence data
    • Bolger AM, Lohse M, Usadel B (2014) Trimmomatic: A flexible trimmer for Illumina sequence data. Bioinformatics 30:2114-2120.
    • (2014) Bioinformatics , vol.30 , pp. 2114-2120
    • Bolger, A.M.1    Lohse, M.2    Usadel, B.3
  • 40
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead B, Trapnell C, Pop M, Salzberg SL (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10:R25.
    • (2009) Genome Biol , vol.10 , pp. R25
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 41
    • 68549104404 scopus 로고    scopus 로고
    • The Sequence Alignment/Map format and SAMtools
    • Li H, et al.; 1000 Genome Project Data Processing Subgroup (2009) The Sequence Alignment/Map format and SAMtools. Bioinformatics 25:2078-2079.
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1
  • 42
    • 84879910635 scopus 로고    scopus 로고
    • MapDamage2.0: Fast approximate Bayesian estimates of ancient DNA damage parameters
    • Jónsson H, Ginolhac A, Schubert M, Johnson PLF, Orlando L (2013) mapDamage2.0: Fast approximate Bayesian estimates of ancient DNA damage parameters. Bioinformatics 29:1682-1684.
    • (2013) Bioinformatics , vol.29 , pp. 1682-1684
    • Jónsson, H.1    Ginolhac, A.2    Schubert, M.3    Johnson, P.L.F.4    Orlando, L.5
  • 43
    • 80053581951 scopus 로고    scopus 로고
    • An Aboriginal Australian genome reveals separate human dispersals into Asia
    • Rasmussen M, et al. (2011) An Aboriginal Australian genome reveals separate human dispersals into Asia. Science 334:94-98.
    • (2011) Science , vol.334 , pp. 94-98
    • Rasmussen, M.1
  • 44
    • 84892365780 scopus 로고    scopus 로고
    • The complete genome sequence of a Neanderthal from the Altai Mountains
    • Prüfer K, et al. (2014) The complete genome sequence of a Neanderthal from the Altai Mountains. Nature 505:43-49.
    • (2014) Nature , vol.505 , pp. 43-49
    • Prüfer, K.1
  • 45
    • 33846006923 scopus 로고    scopus 로고
    • Population structure and eigenanalysis
    • Patterson N, Price AL, Reich D (2006) Population structure and eigenanalysis. PLoS Genet 2:e190.
    • (2006) PLoS Genet , vol.2 , pp. e190
    • Patterson, N.1    Price, A.L.2    Reich, D.3
  • 46
    • 69749099417 scopus 로고    scopus 로고
    • Fast model-based estimation of ancestry in unrelated individuals
    • Alexander DH, Novembre J, Lange K (2009) Fast model-based estimation of ancestry in unrelated individuals. Genome Res 19:1655-1664.
    • (2009) Genome Res , vol.19 , pp. 1655-1664
    • Alexander, D.H.1    Novembre, J.2    Lange, K.3
  • 47
    • 84901614381 scopus 로고    scopus 로고
    • Population genomic analysis of ancient and modern genomes yields new insights into the genetic ancestry of the Tyrolean Iceman and the genetic structure of Europe
    • Sikora M, et al. (2014) Population genomic analysis of ancient and modern genomes yields new insights into the genetic ancestry of the Tyrolean Iceman and the genetic structure of Europe. PLoS Genet 10:e1004353.
    • (2014) PLoS Genet , vol.10 , pp. e1004353
    • Sikora, M.1
  • 48
    • 0032868141 scopus 로고    scopus 로고
    • Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA
    • Andrews RM, et al. (1999) Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA. Nat Genet 23:147.
    • (1999) Nat Genet , vol.23 , pp. 147
    • Andrews, R.M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.