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Volumn 553, Issue 7687, 2018, Pages 203-207

Terminal Pleistocene Alaskan genome reveals first founding population of Native Americans

(18)  Moreno Mayar, J Víctor a   Potter, Ben A b   Vinner, Lasse a   Steinrücken, Matthias c,d   Rasmussen, Simon e   Terhorst, Jonathan f,g   Kamm, John A f,h   Albrechtsen, Anders i   Malaspinas, Anna Sapfo a,j,k   Sikora, Martin a   Reuther, Joshua D b   Irish, Joel D l   Malhi, Ripan S m   Orlando, Ludovic a   Song, Yun S f,n,o   Nielsen, Rasmus a,f   Meltzer, David J a,p   Willerslev, Eske a,h,q  


Author keywords

[No Author keywords available]

Indexed keywords

DEMOGRAPHY; DISPERSAL; DIVERGENCE; GENE FLOW; GENETIC ANALYSIS; GENETIC STRUCTURE; GENOME; HUMAN EVOLUTION; ICE SHEET; LAND BRIDGE; NATIVE SPECIES; PLEISTOCENE;

EID: 85040467287     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature25173     Document Type: Article
Times cited : (218)

References (46)
  • 1
    • 84865120805 scopus 로고    scopus 로고
    • Reconstructing Native American population history
    • Reich, D. et al. Reconstructing Native American population history. Nature 488, 370-374 (2012).
    • (2012) Nature , vol.488 , pp. 370-374
    • Reich, D.1
  • 2
    • 84939864401 scopus 로고    scopus 로고
    • Genomic evidence for the Pleistocene and recent population history of Native Americans
    • Raghavan, M. et al. Genomic evidence for the Pleistocene and recent population history of Native Americans. Science 349, aab3884 (2015).
    • (2015) Science , vol.349 , pp. aab3884
    • Raghavan, M.1
  • 3
    • 84940952798 scopus 로고    scopus 로고
    • Genetic evidence for two founding populations of the Americas
    • Skoglund, P. et al. Genetic evidence for two founding populations of the Americas. Nature 525, 104-108 (2015).
    • (2015) Nature , vol.525 , pp. 104-108
    • Skoglund, P.1
  • 4
    • 85024503877 scopus 로고    scopus 로고
    • Evolutionary population history of early Paleoamerican cranial morphology
    • von Cramon-Taubadel, N., Strauss, A. & Hubbe, M. Evolutionary population history of early Paleoamerican cranial morphology. Sci. Adv. 3, e1602289 (2017).
    • (2017) Sci. Adv. , vol.3 , pp. e1602289
    • Von Cramon-Taubadel, N.1    Strauss, A.2    Hubbe, M.3
  • 6
    • 84914127559 scopus 로고    scopus 로고
    • New insights into Eastern Beringian mortuary behavior: A terminal Pleistocene double infant burial at Upward Sun River
    • Potter, B. A., Irish, J. D., Reuther, J. D. & McKinney, H. J. New insights into Eastern Beringian mortuary behavior: A terminal Pleistocene double infant burial at Upward Sun River. Proc. Natl Acad. Sci. USA 111, 17060-17065 (2014).
    • (2014) Proc. Natl Acad. Sci. USA , vol.111 , pp. 17060-17065
    • Potter, B.A.1    Irish, J.D.2    Reuther, J.D.3    McKinney, H.J.4
  • 7
    • 84893961036 scopus 로고    scopus 로고
    • The genome of a Late Pleistocene human from a Clovis burial site in western Montana
    • Rasmussen, M. et al. The genome of a Late Pleistocene human from a Clovis burial site in western Montana. Nature 506, 225-229 (2014).
    • (2014) Nature , vol.506 , pp. 225-229
    • Rasmussen, M.1
  • 8
    • 84892367625 scopus 로고    scopus 로고
    • Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans
    • Raghavan, M. et al. Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans. Nature 505, 87-91 (2014).
    • (2014) Nature , vol.505 , pp. 87-91
    • Raghavan, M.1
  • 9
    • 39749105082 scopus 로고    scopus 로고
    • Beringian standstill and spread of Native American founders
    • Tamm, E. et al. Beringian standstill and spread of Native American founders. PLoS One 2, e829 (2007).
    • (2007) PLoS One , vol.2 , pp. e829
    • Tamm, E.1
  • 11
    • 44049095202 scopus 로고    scopus 로고
    • Monte Verde: Seaweed, food, medicine, and the peopling of South America
    • Dillehay, T. D. et al. Monte Verde: seaweed, food, medicine, and the peopling of South America. Science 320, 784-786 (2008).
    • (2008) Science , vol.320 , pp. 784-786
    • Dillehay, T.D.1
  • 13
    • 84973892872 scopus 로고    scopus 로고
    • Ancient mitochondrial DNA provides high-resolution time scale of the peopling of the Americas
    • Llamas, B. et al. Ancient mitochondrial DNA provides high-resolution time scale of the peopling of the Americas. Sci. Adv. 2, e1501385 (2016).
    • (2016) Sci. Adv. , vol.2 , pp. e1501385
    • Llamas, B.1
  • 14
    • 84937475681 scopus 로고    scopus 로고
    • The ancestry and affiliations of Kennewick Man
    • Rasmussen, M. et al. The ancestry and affiliations of Kennewick Man. Nature 523, 455-458 (2015).
    • (2015) Nature , vol.523 , pp. 455-458
    • Rasmussen, M.1
  • 15
    • 84907279761 scopus 로고    scopus 로고
    • The genetic prehistory of the New World Arctic
    • Raghavan, M. et al. The genetic prehistory of the New World Arctic. Science 345, 1255832 (2014).
    • (2014) Science , vol.345 , pp. 1255832
    • Raghavan, M.1
  • 16
    • 76749141381 scopus 로고    scopus 로고
    • Ancient human genome sequence of an extinct Palaeo-Eskimo
    • Rasmussen, M. et al. Ancient human genome sequence of an extinct Palaeo-Eskimo. Nature 463, 757-762 (2010).
    • (2010) Nature , vol.463 , pp. 757-762
    • Rasmussen, M.1
  • 17
    • 84946781140 scopus 로고    scopus 로고
    • Two contemporaneous mitogenomes from terminal Pleistocene burials in eastern Beringia
    • Tackney, J. C. et al. Two contemporaneous mitogenomes from terminal Pleistocene burials in eastern Beringia. Proc. Natl Acad. Sci. USA 112, 13833-13838 (2015).
    • (2015) Proc. Natl Acad. Sci. USA , vol.112 , pp. 13833-13838
    • Tackney, J.C.1
  • 18
    • 84908643330 scopus 로고    scopus 로고
    • Patterns of admixture and population structure in native populations of northwest North America
    • Verdu, P. et al. Patterns of admixture and population structure in native populations of northwest North America. PLoS Genet. 10, e1004530 (2014).
    • (2014) PLoS Genet. , vol.10 , pp. e1004530
    • Verdu, P.1
  • 19
    • 84869057650 scopus 로고    scopus 로고
    • Ancient admixture in human history
    • Patterson, N. et al. Ancient admixture in human history. Genetics 192, 1065-1093 (2012).
    • (2012) Genetics , vol.192 , pp. 1065-1093
    • Patterson, N.1
  • 20
    • 69749099417 scopus 로고    scopus 로고
    • Fast model-based estimation of ancestry in unrelated individuals
    • Alexander, D. H., Novembre, J. & Lange, K. Fast model-based estimation of ancestry in unrelated individuals. Genome Res. 19, 1655-1664 (2009).
    • (2009) Genome Res. , vol.19 , pp. 1655-1664
    • Alexander, D.H.1    Novembre, J.2    Lange, K.3
  • 21
    • 84887092567 scopus 로고    scopus 로고
    • Estimating individual admixture proportions from next generation sequencing data
    • Skotte, L., Korneliussen, T. S. & Albrechtsen, A. Estimating individual admixture proportions from next generation sequencing data. Genetics 195, 693-702 (2013).
    • (2013) Genetics , vol.195 , pp. 693-702
    • Skotte, L.1    Korneliussen, T.S.2    Albrechtsen, A.3
  • 22
    • 84921823843 scopus 로고    scopus 로고
    • Bammds: A tool for assessing the ancestry of low-depth whole-genome data using multidimensional scaling (MDS)
    • Malaspinas, A.-S. et al. bammds: A tool for assessing the ancestry of low-depth whole-genome data using multidimensional scaling (MDS). Bioinformatics 30, 2962-2964 (2014).
    • (2014) Bioinformatics , vol.30 , pp. 2962-2964
    • Malaspinas, A.-S.1
  • 23
    • 84869026948 scopus 로고    scopus 로고
    • Inference of population splits and mixtures from genome-wide allele frequency data
    • Pickrell, J. K. & Pritchard, J. K. Inference of population splits and mixtures from genome-wide allele frequency data. PLoS Genet. 8, e1002967 (2012).
    • (2012) PLoS Genet. , vol.8 , pp. e1002967
    • Pickrell, J.K.1    Pritchard, J.K.2
  • 25
    • 84984629864 scopus 로고    scopus 로고
    • Postglacial viability and colonization in North America's ice-free corridor
    • Pedersen, M. W. et al. Postglacial viability and colonization in North America's ice-free corridor. Nature 537, 45-49 (2016).
    • (2016) Nature , vol.537 , pp. 45-49
    • Pedersen, M.W.1
  • 28
    • 85013082995 scopus 로고    scopus 로고
    • Efficient computation of the joint sample frequency spectra for multiple populations
    • Kamm, J. A., Terhorst, J. & Song, Y. S. Efficient computation of the joint sample frequency spectra for multiple populations. J. Comput. Graph. Stat. 26, 182-194 (2017).
    • (2017) J. Comput. Graph. Stat. , vol.26 , pp. 182-194
    • Kamm, J.A.1    Terhorst, J.2    Song, Y.S.3
  • 29
    • 85007071697 scopus 로고    scopus 로고
    • Robust and scalable inference of population history from hundreds of unphased whole genomes
    • Terhorst, J., Kamm, J. A. & Song, Y. S. Robust and scalable inference of population history from hundreds of unphased whole genomes. Nat. Genet. 49, 303-309 (2017).
    • (2017) Nat. Genet. , vol.49 , pp. 303-309
    • Terhorst, J.1    Kamm, J.A.2    Song, Y.S.3
  • 30
    • 85029306846 scopus 로고    scopus 로고
    • The 'microblade adaptation' and recolonization of Siberia during the late Upper Pleistocene
    • Goebel, T. The 'microblade adaptation' and recolonization of Siberia during the late Upper Pleistocene. Archaeol. Pap. Am. Anthropol. Assoc. 12, 117-131 (2002).
    • (2002) Archaeol. Pap. Am. Anthropol. Assoc. , vol.12 , pp. 117-131
    • Goebel, T.1
  • 31
    • 84930940396 scopus 로고    scopus 로고
    • Population genomics of Bronze Age Eurasia
    • Allentoft, M. E. et al. Population genomics of Bronze Age Eurasia. Nature 522, 167-172 (2015).
    • (2015) Nature , vol.522 , pp. 167-172
    • Allentoft, M.E.1
  • 32
    • 84863101693 scopus 로고    scopus 로고
    • AdapterRemoval: Easy cleaning of next-generation sequencing reads
    • Lindgreen, S. AdapterRemoval: easy cleaning of next-generation sequencing reads. BMC Res. Notes 5, 337 (2012).
    • (2012) BMC Res. Notes , vol.5 , pp. 337
    • Lindgreen, S.1
  • 33
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 34
    • 84860683374 scopus 로고    scopus 로고
    • Improving ancient DNA read mapping against modern reference genomes
    • Schubert, M. et al. Improving ancient DNA read mapping against modern reference genomes. BMC Genomics 13, 178 (2012).
    • (2012) BMC Genomics , vol.13 , pp. 178
    • Schubert, M.1
  • 35
    • 79955483667 scopus 로고    scopus 로고
    • A framework for variation discovery and genotyping using next-generation DNA sequencing data
    • DePristo, M. A. et al. A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat. Genet. 43, 491-498 (2011).
    • (2011) Nat. Genet. , vol.43 , pp. 491-498
    • DePristo, M.A.1
  • 36
    • 68549104404 scopus 로고    scopus 로고
    • The sequence alignment/map format and SAMtools
    • Li, H. et al. The sequence alignment/map format and SAMtools. Bioinformatics 25, 2078-2079 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1
  • 37
    • 84871952176 scopus 로고    scopus 로고
    • Improved whole-chromosome phasing for disease and population genetic studies
    • Delaneau, O., Zagury, J.-F. & Marchini, J. Improved whole-chromosome phasing for disease and population genetic studies. Nat. Methods 10, 5-6 (2013).
    • (2013) Nat. Methods , vol.10 , pp. 5-6
    • Delaneau, O.1    Zagury, J.-F.2    Marchini, J.3
  • 38
    • 84876151646 scopus 로고    scopus 로고
    • A revised timescale for human evolution based on ancient mitochondrial genomes
    • Fu, Q. et al. A revised timescale for human evolution based on ancient mitochondrial genomes. Curr. Biol. 23, 553-559 (2013).
    • (2013) Curr. Biol. , vol.23 , pp. 553-559
    • Fu, Q.1
  • 39
    • 48649096196 scopus 로고    scopus 로고
    • A complete Neandertal mitochondrial genome sequence determined by high-throughput sequencing
    • Green, R. E. et al. A complete Neandertal mitochondrial genome sequence determined by high-throughput sequencing. Cell 134, 416-426 (2008).
    • (2008) Cell , vol.134 , pp. 416-426
    • Green, R.E.1
  • 40
    • 84964815211 scopus 로고    scopus 로고
    • Joint estimation of contamination, error and demography for nuclear DNA from ancient humans
    • Racimo, F., Renaud, G. & Slatkin, M. Joint estimation of contamination, error and demography for nuclear DNA from ancient humans. PLoS Genet. 12, e1005972 (2016).
    • (2016) PLoS Genet. , vol.12 , pp. e1005972
    • Racimo, F.1    Renaud, G.2    Slatkin, M.3
  • 41
    • 84879888373 scopus 로고    scopus 로고
    • Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse
    • Orlando, L. et al. Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse. Nature 499, 74-78 (2013).
    • (2013) Nature , vol.499 , pp. 74-78
    • Orlando, L.1
  • 42
    • 84950275982 scopus 로고    scopus 로고
    • NgsRelate: A software tool for estimating pairwise relatedness from next-generation sequencing data
    • Korneliussen, T. S. & Moltke, I. NgsRelate: A software tool for estimating pairwise relatedness from next-generation sequencing data. Bioinformatics 31, 4009-4011 (2015).
    • (2015) Bioinformatics , vol.31 , pp. 4009-4011
    • Korneliussen, T.S.1    Moltke, I.2
  • 43
    • 66249112837 scopus 로고    scopus 로고
    • Relatedness mapping and tracts of relatedness for genome-wide data in the presence of linkage disequilibrium
    • Albrechtsen, A. et al. Relatedness mapping and tracts of relatedness for genome-wide data in the presence of linkage disequilibrium. Genet. Epidemiol. 33, 266-274 (2009).
    • (2009) Genet. Epidemiol. , vol.33 , pp. 266-274
    • Albrechtsen, A.1
  • 45
    • 77952136530 scopus 로고    scopus 로고
    • A draft sequence of the Neandertal genome
    • Green, R. E. et al. A draft sequence of the Neandertal genome. Science 328, 710-722 (2010).
    • (2010) Science , vol.328 , pp. 710-722
    • Green, R.E.1
  • 46
    • 85021333511 scopus 로고    scopus 로고
    • Admixturegraph: An R package for admixture graph manipulation and fitting
    • Leppälä, K., Nielsen, S. V. & Mailund, T. Admixturegraph: An R package for admixture graph manipulation and fitting. Bioinformatics 33, 1738-1740 (2017).
    • (2017) Bioinformatics , vol.33 , pp. 1738-1740
    • Leppälä, K.1    Nielsen, S.V.2    Mailund, T.3


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