-
1
-
-
0032515638
-
Human influenza A H5N1 virus related to a highly pathogenic avian influenza virus
-
9482438
-
Claas EC, Osterhaus AD, van Beek R, De Jong JC, Rimmelzwaan GF, Senne DA, et al. Human influenza A H5N1 virus related to a highly pathogenic avian influenza virus. Lancet (1998) 351:472–7. 10.1016/S0140-6736(97)11212-09482438
-
(1998)
Lancet
, vol.351
, pp. 472-477
-
-
Claas, E.C.1
Osterhaus, A.D.2
van Beek, R.3
De Jong, J.C.4
Rimmelzwaan, G.F.5
Senne, D.A.6
-
2
-
-
0032515589
-
Clinical features and rapid viral diagnosis of human disease associated with avian influenza A H5N1 virus
-
9482437
-
Yuen KY, Chan PK, Peiris M, Tsang DN, Que TL, Shortridge KF, et al. Clinical features and rapid viral diagnosis of human disease associated with avian influenza A H5N1 virus. Lancet (1998) 351:467–71. 10.1016/S0140-6736(98)01182-99482437
-
(1998)
Lancet
, vol.351
, pp. 467-471
-
-
Yuen, K.Y.1
Chan, P.K.2
Peiris, M.3
Tsang, D.N.4
Que, T.L.5
Shortridge, K.F.6
-
3
-
-
33749511112
-
Fatal outcome of human influenza A (H5N1) is associated with high viral load and hypercytokinemia
-
16964257
-
de Jong MD, Simmons CP, Thanh TT, Hien VM, Smith GJ, Chau TN, et al. Fatal outcome of human influenza A (H5N1) is associated with high viral load and hypercytokinemia. Nat Med. (2006) 12:1203–7. 10.1038/nm147716964257
-
(2006)
Nat Med
, vol.12
, pp. 1203-1207
-
-
de Jong, M.D.1
Simmons, C.P.2
Thanh, T.T.3
Hien, V.M.4
Smith, G.J.5
Chau, T.N.6
-
4
-
-
84860523111
-
Into the eye of the cytokine storm
-
22390970
-
Tisoncik JR, Korth MJ, Simmons CP, Farrar J, Martin TR, Katze MG. Into the eye of the cytokine storm. Microbiol Mol Biol Rev. (2012) 76:16–32. 10.1128/MMBR.05015-1122390970
-
(2012)
Microbiol Mol Biol Rev
, vol.76
, pp. 16-32
-
-
Tisoncik, J.R.1
Korth, M.J.2
Simmons, C.P.3
Farrar, J.4
Martin, T.R.5
Katze, M.G.6
-
5
-
-
84954211517
-
The cytokine storm of severe influenza and development of immunomodulatory therapy
-
26189369
-
Liu Q, Zhou YH, Yang ZQ. The cytokine storm of severe influenza and development of immunomodulatory therapy. Cell Mol Immunol. (2016) 13:3–10. 10.1038/cmi.2015.7426189369
-
(2016)
Cell Mol Immunol
, vol.13
, pp. 3-10
-
-
Liu, Q.1
Zhou, Y.H.2
Yang, Z.Q.3
-
6
-
-
0035909372
-
Recognition of double-stranded RNA and activation of NF-kappaB by Toll-like receptor 3
-
11607032
-
Alexopoulou L, Holt AC, Medzhitov R, Flavell RA. Recognition of double-stranded RNA and activation of NF-kappaB by Toll-like receptor 3. Nature (2001) 413:732–8. 10.1038/3509956011607032
-
(2001)
Nature
, vol.413
, pp. 732-738
-
-
Alexopoulou, L.1
Holt, A.C.2
Medzhitov, R.3
Flavell, R.A.4
-
7
-
-
34548694962
-
Innate recognition of viruses
-
17892846
-
Pichlmair A, Reis e Sousa C. Innate recognition of viruses. Immunity (2007) 27:370–83. 10.1016/j.immuni.2007.08.01217892846
-
(2007)
Immunity
, vol.27
, pp. 370-383
-
-
Pichlmair, A.1
Reis e Sousa, C.2
-
8
-
-
0028234529
-
-
Kerr IM, Stark GR. Jak-STAT pathways and transcriptional activation response to IFNs and other extracellular signaling proteins
-
Darnell JE, Jr., Kerr IM, Stark GR. Jak-STAT pathways and transcriptional activation in response to IFNs and other extracellular signaling proteins. Science (1994) 264:1415–21. 10.1126/science.8197455
-
(1994)
Science
, vol.264
, pp. 1415-1421
-
-
Darnell, J.E.1
-
9
-
-
85010812442
-
Phosphorylation-Dependent Feedback Inhibition of RIG-I by DAPK1 Identified by Kinome-wide siRNA Screening
-
28132841, : e408
-
Willemsen J, Wicht O, Wolanski JC, Baur N, Bastian S, Haas DA, et al. Phosphorylation-Dependent Feedback Inhibition of RIG-I by DAPK1 Identified by Kinome-wide siRNA Screening. Mol Cell (2017) 65:403–15 e408. 10.1016/j.molcel.2016.12.02128132841
-
(2017)
Mol Cell
, vol.65
, pp. 403-415
-
-
Willemsen, J.1
Wicht, O.2
Wolanski, J.C.3
Baur, N.4
Bastian, S.5
Haas, D.A.6
-
10
-
-
0026782376
-
A novel zinc finger coiled-coil domain in a family of nuclear proteins
-
1412709
-
Reddy BA, Etkin LD, Freemont PS. A novel zinc finger coiled-coil domain in a family of nuclear proteins. Trends Biochem Sci. (1992) 17:344–5. 10.1016/0968-0004(92)90308-V1412709
-
(1992)
Trends Biochem Sci
, vol.17
, pp. 344-345
-
-
Reddy, B.A.1
Etkin, L.D.2
Freemont, P.S.3
-
11
-
-
84894515095
-
TRIMmunity: the roles of the TRIM E3-ubiquitin ligase family in innate antiviral immunity
-
24333484
-
Rajsbaum R, Garcia-Sastre A, Versteeg GA. TRIMmunity: the roles of the TRIM E3-ubiquitin ligase family in innate antiviral immunity. J Mol Biol. (2014) 426:1265–84. 10.1016/j.jmb.2013.12.00524333484
-
(2014)
J Mol Biol
, vol.426
, pp. 1265-1284
-
-
Rajsbaum, R.1
Garcia-Sastre, A.2
Versteeg, G.A.3
-
12
-
-
85028727543
-
The TRIMendous Role of TRIMs in Virus-Host Interactions
-
28829373
-
van Tol S, Hage A, Giraldo MI, Bharaj P, Rajsbaum R. The TRIMendous Role of TRIMs in Virus-Host Interactions. Vaccines (Basel) (2017) 5:E23. 10.3390/vaccines503002328829373
-
(2017)
Vaccines (Basel)
, vol.5
, pp. E23
-
-
van Tol, S.1
Hage, A.2
Giraldo, M.I.3
Bharaj, P.4
Rajsbaum, R.5
-
13
-
-
9144223085
-
TIF1delta, a novel HP1-interacting member of the transcriptional intermediary factor 1 (TIF1) family expressed by elongating spermatids
-
15322135
-
Khetchoumian K, Teletin M, Mark M, Lerouge T, Cervino M, Oulad-Abdelghani M, et al. TIF1delta, a novel HP1-interacting member of the transcriptional intermediary factor 1 (TIF1) family expressed by elongating spermatids. J Biol Chem. (2004) 279:48329–41. 10.1074/jbc.M40477920015322135
-
(2004)
J Biol Chem
, vol.279
, pp. 48329-48341
-
-
Khetchoumian, K.1
Teletin, M.2
Mark, M.3
Lerouge, T.4
Cervino, M.5
Oulad-Abdelghani, M.6
-
14
-
-
33646842883
-
Subclassification of the RBCC/TRIM superfamily reveals a novel motif necessary for microtubule binding
-
16434393
-
Short KM, Cox TC. Subclassification of the RBCC/TRIM superfamily reveals a novel motif necessary for microtubule binding. J Biol Chem. (2006) 281:8970–80. 10.1074/jbc.M51275520016434393
-
(2006)
J Biol Chem
, vol.281
, pp. 8970-8980
-
-
Short, K.M.1
Cox, T.C.2
-
15
-
-
33751007001
-
The KAP1 corepressor functions to coordinate the assembly of de novo HP1-demarcated microenvironments of heterochromatin required for KRAB zinc finger protein-mediated transcriptional repression
-
16954381
-
Sripathy SP, Stevens J, Schultz DC. The KAP1 corepressor functions to coordinate the assembly of de novo HP1-demarcated microenvironments of heterochromatin required for KRAB zinc finger protein-mediated transcriptional repression. Mol Cell Biol. (2006) 26:8623–38. 10.1128/MCB.00487-0616954381
-
(2006)
Mol Cell Biol
, vol.26
, pp. 8623-8638
-
-
Sripathy, S.P.1
Stevens, J.2
Schultz, D.C.3
-
16
-
-
79960677839
-
KAP1 protein: an enigmatic master regulator of the genome
-
21652716
-
Iyengar S, Farnham PJ. KAP1 protein: an enigmatic master regulator of the genome. J Biol Chem. (2011) 286:26267–76. 10.1074/jbc.R111.25256921652716
-
(2011)
J Biol Chem
, vol.286
, pp. 26267-26276
-
-
Iyengar, S.1
Farnham, P.J.2
-
17
-
-
85028569951
-
The complexity of TRIM28 contribution to cancer
-
28851455
-
Czerwinska P, Mazurek S, Wiznerowicz M. The complexity of TRIM28 contribution to cancer. J Biomed Sci. (2017) 24:63. 10.1186/s12929-017-0374-428851455
-
(2017)
J Biomed Sci
, vol.24
, pp. 63
-
-
Czerwinska, P.1
Mazurek, S.2
Wiznerowicz, M.3
-
18
-
-
84978946303
-
TRIM28 is an epigenetic barrier to induced pluripotent stem cell reprogramming
-
27350605
-
Miles DC, de Vries NA, Gisler S, Lieftink C, Akhtar W, Gogola E, et al. TRIM28 is an epigenetic barrier to induced pluripotent stem cell reprogramming. Stem Cells (2017) 35:147–57. 10.1002/stem.245327350605
-
(2017)
Stem Cells
, vol.35
, pp. 147-157
-
-
Miles, D.C.1
de Vries, N.A.2
Gisler, S.3
Lieftink, C.4
Akhtar, W.5
Gogola, E.6
-
19
-
-
0033915781
-
Mice lacking the transcriptional corepressor TIF1beta are defective in early postimplantation development
-
10851139
-
Cammas F, Mark M, Dolle P, Dierich A, Chambon P, Losson R. Mice lacking the transcriptional corepressor TIF1beta are defective in early postimplantation development. Development (2000) 127:2955–63. 10851139
-
(2000)
Development
, vol.127
, pp. 2955-2963
-
-
Cammas, F.1
Mark, M.2
Dolle, P.3
Dierich, A.4
Chambon, P.5
Losson, R.6
-
20
-
-
74549116659
-
KAP1 controls endogenous retroviruses in embryonic stem cells
-
20075919
-
Rowe HM, Jakobsson J, Mesnard D, Rougemont J, Reynard S, Aktas T, et al. KAP1 controls endogenous retroviruses in embryonic stem cells. Nature (2010) 463:237–40. 10.1038/nature0867420075919
-
(2010)
Nature
, vol.463
, pp. 237-240
-
-
Rowe, H.M.1
Jakobsson, J.2
Mesnard, D.3
Rougemont, J.4
Reynard, S.5
Aktas, T.6
-
21
-
-
34848819391
-
TRIM28 mediates primer binding site-targeted silencing of murine leukemia virus in embryonic cells
-
17923087
-
Wolf D, Goff SP. TRIM28 mediates primer binding site-targeted silencing of murine leukemia virus in embryonic cells. Cell (2007) 131:46–57. 10.1016/j.cell.2007.07.02617923087
-
(2007)
Cell
, vol.131
, pp. 46-57
-
-
Wolf, D.1
Goff, S.P.2
-
22
-
-
50449093638
-
TRIM28 mediates primer binding site-targeted silencing of Lys1,2 tRNA-utilizing retroviruses in embryonic cells
-
18713861
-
Wolf D, Hug K, Goff SP. TRIM28 mediates primer binding site-targeted silencing of Lys1,2 tRNA-utilizing retroviruses in embryonic cells. Proc Natl Acad Sci USA. (2008) 105:12521–6. 10.1073/pnas.080554010518713861
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 12521-12526
-
-
Wolf, D.1
Hug, K.2
Goff, S.P.3
-
23
-
-
67651007508
-
Kruppel-associated box domain-associated protein-1 as a latency regulator for Kaposi's sarcoma-associated herpesvirus and its modulation by the viral protein kinase
-
19584288
-
Chang PC, Fitzgerald LD, Van Geelen A, Izumiya Y, Ellison TJ, Wang DH, et al. Kruppel-associated box domain-associated protein-1 as a latency regulator for Kaposi's sarcoma-associated herpesvirus and its modulation by the viral protein kinase. Cancer Res. (2009) 69:5681–9. 10.1158/0008-5472.CAN-08-457019584288
-
(2009)
Cancer Res
, vol.69
, pp. 5681-5689
-
-
Chang, P.C.1
Fitzgerald, L.D.2
Van Geelen, A.3
Izumiya, Y.4
Ellison, T.J.5
Wang, D.H.6
-
24
-
-
36749009119
-
PHD domain-mediated E3 ligase activity directs intramolecular sumoylation of an adjacent bromodomain required for gene silencing
-
18082607
-
Ivanov AV, Peng H, Yurchenko V, Yap KL, Negorev DG, Schultz DC, et al. PHD domain-mediated E3 ligase activity directs intramolecular sumoylation of an adjacent bromodomain required for gene silencing. Mol Cell (2007) 28:823–37. 10.1016/j.molcel.2007.11.01218082607
-
(2007)
Mol Cell
, vol.28
, pp. 823-837
-
-
Ivanov, A.V.1
Peng, H.2
Yurchenko, V.3
Yap, K.L.4
Negorev, D.G.5
Schultz, D.C.6
-
25
-
-
37549021501
-
Role for KAP1 serine 824 phosphorylation and sumoylation/desumoylation switch in regulating KAP1-mediated transcriptional repression
-
17942393
-
Li X, Lee YK, Jeng JC, Yen Y, Schultz DC, Shih HM, et al. Role for KAP1 serine 824 phosphorylation and sumoylation/desumoylation switch in regulating KAP1-mediated transcriptional repression. J Biol Chem. (2007) 282:36177–89. 10.1074/jbc.M70691220017942393
-
(2007)
J Biol Chem
, vol.282
, pp. 36177-36189
-
-
Li, X.1
Lee, Y.K.2
Jeng, J.C.3
Yen, Y.4
Schultz, D.C.5
Shih, H.M.6
-
26
-
-
34249853932
-
Sumoylation of the transcriptional intermediary factor 1beta (TIF1beta), the Co-repressor of the KRAB Multifinger proteins, is required for its transcriptional activity and is modulated by the KRAB domain
-
17298944
-
Mascle XH, Germain-Desprez D, Huynh P, Estephan P, Aubry M. Sumoylation of the transcriptional intermediary factor 1beta (TIF1beta), the Co-repressor of the KRAB Multifinger proteins, is required for its transcriptional activity and is modulated by the KRAB domain. J Biol Chem. (2007) 282:10190–202. 10.1074/jbc.M61142920017298944
-
(2007)
J Biol Chem
, vol.282
, pp. 10190-10202
-
-
Mascle, X.H.1
Germain-Desprez, D.2
Huynh, P.3
Estephan, P.4
Aubry, M.5
-
27
-
-
84874256730
-
The E3-ligase TRIM family of proteins regulates signaling pathways triggered by innate immune pattern-recognition receptors
-
23438823
-
Versteeg GA, Rajsbaum R, Sanchez-Aparicio MT, Maestre AM, Valdiviezo J, Shi M, et al. The E3-ligase TRIM family of proteins regulates signaling pathways triggered by innate immune pattern-recognition receptors. Immunity (2013) 38:384–98. 10.1016/j.immuni.2012.11.01323438823
-
(2013)
Immunity
, vol.38
, pp. 384-398
-
-
Versteeg, G.A.1
Rajsbaum, R.2
Sanchez-Aparicio, M.T.3
Maestre, A.M.4
Valdiviezo, J.5
Shi, M.6
-
28
-
-
42249114825
-
KAP1 regulates type I interferon/STAT1-mediated IRF-1 gene expression
-
18381204
-
Kamitani S, Ohbayashi N, Ikeda O, Togi S, Muromoto R, Sekine Y, et al. KAP1 regulates type I interferon/STAT1-mediated IRF-1 gene expression. Biochem Biophys Res Commun. (2008) 370:366–70. 10.1016/j.bbrc.2008.03.10418381204
-
(2008)
Biochem Biophys Res Commun
, vol.370
, pp. 366-370
-
-
Kamitani, S.1
Ohbayashi, N.2
Ikeda, O.3
Togi, S.4
Muromoto, R.5
Sekine, Y.6
-
29
-
-
43449110430
-
Physical and functional interactions between STAT3 and KAP1
-
18037959
-
Tsuruma R, Ohbayashi N, Kamitani S, Ikeda O, Sato N, Muromoto R, et al. Physical and functional interactions between STAT3 and KAP1. Oncogene (2008) 27:3054–9. 10.1038/sj.onc.121095218037959
-
(2008)
Oncogene
, vol.27
, pp. 3054-3059
-
-
Tsuruma, R.1
Ohbayashi, N.2
Kamitani, S.3
Ikeda, O.4
Sato, N.5
Muromoto, R.6
-
30
-
-
80555133291
-
Tripartite motif-containing protein 28 is a small ubiquitin-related modifier E3 ligase and negative regulator of IFN regulatory factor 7
-
21940674
-
Liang Q, Deng H, Li X, Wu X, Tang Q, Chang TH, et al. Tripartite motif-containing protein 28 is a small ubiquitin-related modifier E3 ligase and negative regulator of IFN regulatory factor 7. J Immunol. (2011) 187:4754–63. 10.4049/jimmunol.110170421940674
-
(2011)
J Immunol
, vol.187
, pp. 4754-4763
-
-
Liang, Q.1
Deng, H.2
Li, X.3
Wu, X.4
Tang, Q.5
Chang, T.H.6
-
31
-
-
84947313183
-
Global Reprogramming of host SUMOylation during influenza virus infection
-
26549460
-
Domingues P, Golebiowski F, Tatham MH, Lopes AM, Taggart A, Hay RT, et al. Global Reprogramming of host SUMOylation during influenza virus infection. Cell Rep. (2015) 13:1467–80. 10.1016/j.celrep.2015.10.00126549460
-
(2015)
Cell Rep
, vol.13
, pp. 1467-1480
-
-
Domingues, P.1
Golebiowski, F.2
Tatham, M.H.3
Lopes, A.M.4
Taggart, A.5
Hay, R.T.6
-
32
-
-
0034705225
-
A DNA transfection system for generation of influenza A virus from eight plasmids
-
10801978
-
Hoffmann E, Neumann G, Kawaoka Y, Hobom G, Webster RG. A DNA transfection system for generation of influenza A virus from eight plasmids. Proc Natl Acad Sci USA. (2000) 97:6108–13. 10.1073/pnas.10013369710801978
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 6108-6113
-
-
Hoffmann, E.1
Neumann, G.2
Kawaoka, Y.3
Hobom, G.4
Webster, R.G.5
-
33
-
-
78049408241
-
Fusion-active glycoprotein G mediates the cytotoxicity of vesicular stomatitis virus M mutants lacking host shut-off activity
-
20631091
-
Hoffmann M, Wu YJ, Gerber M, Berger-Rentsch M, Heimrich B, Schwemmle M, et al. Fusion-active glycoprotein G mediates the cytotoxicity of vesicular stomatitis virus M mutants lacking host shut-off activity. J Gen Virol. (2010) 91:2782–93. 10.1099/vir.0.023978-020631091
-
(2010)
J Gen Virol
, vol.91
, pp. 2782-2793
-
-
Hoffmann, M.1
Wu, Y.J.2
Gerber, M.3
Berger-Rentsch, M.4
Heimrich, B.5
Schwemmle, M.6
-
34
-
-
84921502751
-
Biological and protective properties of immune sera directed to the influenza virus neuraminidase
-
25392225
-
Halbherr SJ, Ludersdorfer TH, Ricklin M, Locher S, Berger Rentsch M, Summerfield A, et al. Biological and protective properties of immune sera directed to the influenza virus neuraminidase. J Virol. (2015) 89:1550–63. 10.1128/JVI.02949-1425392225
-
(2015)
J Virol
, vol.89
, pp. 1550-1563
-
-
Halbherr, S.J.1
Ludersdorfer, T.H.2
Ricklin, M.3
Locher, S.4
Berger Rentsch, M.5
Summerfield, A.6
-
35
-
-
84887010498
-
Genome engineering using the CRISPR-Cas9 system
-
24157548
-
Ran FA, Hsu PD, Wright J, Agarwala V, Scott DA, Zhang F. Genome engineering using the CRISPR-Cas9 system. Nat Protoc. (2013) 8:2281–308. 10.1038/nprot.2013.14324157548
-
(2013)
Nat Protoc
, vol.8
, pp. 2281-2308
-
-
Ran, F.A.1
Hsu, P.D.2
Wright, J.3
Agarwala, V.4
Scott, D.A.5
Zhang, F.6
-
36
-
-
84905262730
-
Improved vectors and genome-wide libraries for CRISPR screening
-
25075903
-
Sanjana NE, Shalem O, Zhang F. Improved vectors and genome-wide libraries for CRISPR screening. Nat Methods (2014) 11:783–4. 10.1038/nmeth.304725075903
-
(2014)
Nat Methods
, vol.11
, pp. 783-784
-
-
Sanjana, N.E.1
Shalem, O.2
Zhang, F.3
-
37
-
-
84948987007
-
Activation of type, I
-
26588843,., and III interferon response by mitochondrial and peroxisomal MAVS and Inhibition by hepatitis C virus
-
Bender S, Reuter A, Eberle F, Einhorn E, Binder M, Bartenschlager R. Activation of type, I., and III interferon response by mitochondrial and peroxisomal MAVS and Inhibition by hepatitis C virus. PLoS Pathog. (2015) 11:e1005264. 10.1371/journal.ppat.100526426588843
-
(2015)
PLoS Pathog
, vol.11
, pp. e1005264
-
-
Bender, S.1
Reuter, A.2
Eberle, F.3
Einhorn, E.4
Binder, M.5
Bartenschlager, R.6
-
38
-
-
62349122241
-
High accuracy mass spectrometry in large-scale analysis of protein phosphorylation
-
19241030
-
Olsen JV, Macek B. High accuracy mass spectrometry in large-scale analysis of protein phosphorylation. Methods Mol Biol. (2009) 492:131–42. 10.1007/978-1-59745-493-3_719241030
-
(2009)
Methods Mol Biol
, vol.492
, pp. 131-142
-
-
Olsen, J.V.1
Macek, B.2
-
39
-
-
84905252531
-
Absolute proteome and phosphoproteome dynamics during the cell cycle of Schizosaccharomyces pombe (Fission Yeast)
-
24763107
-
Carpy A, Krug K, Graf S, Koch A, Popic S, Hauf S, et al. Absolute proteome and phosphoproteome dynamics during the cell cycle of Schizosaccharomyces pombe (Fission Yeast). Mol Cell Proteomics (2014) 13:1925–36. 10.1074/mcp.M113.03582424763107
-
(2014)
Mol Cell Proteomics
, vol.13
, pp. 1925-1936
-
-
Carpy, A.1
Krug, K.2
Graf, S.3
Koch, A.4
Popic, S.5
Hauf, S.6
-
40
-
-
84956628939
-
Phosphorylation of influenza A virus NS1 protein at threonine 49 suppresses its interferon antagonistic activity
-
26687707
-
Kathum OA, Schrader T, Anhlan D, Nordhoff C, Liedmann S, Pande A, et al. Phosphorylation of influenza A virus NS1 protein at threonine 49 suppresses its interferon antagonistic activity. Cell Microbiol. (2016) 18:784–91. 10.1111/cmi.1255926687707
-
(2016)
Cell Microbiol
, vol.18
, pp. 784-791
-
-
Kathum, O.A.1
Schrader, T.2
Anhlan, D.3
Nordhoff, C.4
Liedmann, S.5
Pande, A.6
-
41
-
-
0035710746
-
Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method
-
11846609
-
Livak KJ, Schmittgen TD. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method. Methods (2001) 25:402–8. 10.1006/meth.2001.126211846609
-
(2001)
Methods
, vol.25
, pp. 402-408
-
-
Livak, K.J.1
Schmittgen, T.D.2
-
42
-
-
10744224732
-
Avian influenza A virus (H7N7) associated with human conjunctivitis and a fatal case of acute respiratory distress syndrome
-
14745020
-
Fouchier RA, Schneeberger PM, Rozendaal FW, Broekman JM, Kemink SA, Munster V, et al. Avian influenza A virus (H7N7) associated with human conjunctivitis and a fatal case of acute respiratory distress syndrome. Proc Natl Acad Sci USA. (2004) 101:1356–61. 10.1073/pnas.030835210014745020
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 1356-1361
-
-
Fouchier, R.A.1
Schneeberger, P.M.2
Rozendaal, F.W.3
Broekman, J.M.4
Kemink, S.A.5
Munster, V.6
-
43
-
-
35148894468
-
Pathogenesis of avian influenza (H7) virus infection in mice and ferrets: enhanced virulence of Eurasian H7N7 viruses isolated from humans
-
17686867
-
Belser JA, Lu X, Maines TR, Smith C, Li Y, Donis RO, et al. Pathogenesis of avian influenza (H7) virus infection in mice and ferrets: enhanced virulence of Eurasian H7N7 viruses isolated from humans. J Virol. (2007) 81:11139–47. 10.1128/JVI.01235-0717686867
-
(2007)
J Virol
, vol.81
, pp. 11139-11147
-
-
Belser, J.A.1
Lu, X.2
Maines, T.R.3
Smith, C.4
Li, Y.5
Donis, R.O.6
-
44
-
-
84907290669
-
Human infection with highly pathogenic A(H7N7) avian influenza virus, Italy
-
25271444, 2014
-
Puzelli S, Rossini G, Facchini M, Vaccari G, Di Trani L, Di Martino A, et al. Human infection with highly pathogenic A(H7N7) avian influenza virus, Italy, (2013). Emerg Infect Dis. (2014) 20:1745–9. 10.3201/eid2010.14051225271444
-
(2013)
Emerg Infect Dis
, vol.20
, pp. 1745-1749
-
-
Puzelli, S.1
Rossini, G.2
Facchini, M.3
Vaccari, G.4
Di Trani, L.5
Di Martino, A.6
-
45
-
-
80051793361
-
A phospho-proteomic screen identifies substrates of the checkpoint kinase Chk1
-
21851590
-
Blasius M, Forment JV, Thakkar N, Wagner SA, Choudhary C, Jackson SP. A phospho-proteomic screen identifies substrates of the checkpoint kinase Chk1. Genome Biol. (2011) 12:R78. 10.1186/gb-2011-12-8-r7821851590
-
(2011)
Genome Biol
, vol.12
, pp. R78
-
-
Blasius, M.1
Forment, J.V.2
Thakkar, N.3
Wagner, S.A.4
Choudhary, C.5
Jackson, S.P.6
-
46
-
-
84864983275
-
Kruppel-associated Box (KRAB)-associated co-repressor (KAP-1) Ser-473 phosphorylation regulates heterochromatin protein 1beta (HP1-beta) mobilization and DNA repair in heterochromatin
-
22715096
-
Bolderson E, Savage KI, Mahen R, Pisupati V, Graham ME, Richard DJ, et al. Kruppel-associated Box (KRAB)-associated co-repressor (KAP-1) Ser-473 phosphorylation regulates heterochromatin protein 1beta (HP1-beta) mobilization and DNA repair in heterochromatin. J Biol Chem. (2012) 287:28122–31. 10.1074/jbc.M112.36838122715096
-
(2012)
J Biol Chem
, vol.287
, pp. 28122-28131
-
-
Bolderson, E.1
Savage, K.I.2
Mahen, R.3
Pisupati, V.4
Graham, M.E.5
Richard, D.J.6
-
47
-
-
84880611418
-
Kaposi's sarcoma-associated herpesvirus kaposin B induces unique monophosphorylation of STAT3 at serine 727 and MK2-mediated inactivation of the STAT3 transcriptional repressor TRIM28
-
23740979
-
King CA. Kaposi's sarcoma-associated herpesvirus kaposin B induces unique monophosphorylation of STAT3 at serine 727 and MK2-mediated inactivation of the STAT3 transcriptional repressor TRIM28. J Virol. (2013) 87:8779–91. 10.1128/JVI.02976-1223740979
-
(2013)
J Virol
, vol.87
, pp. 8779-8791
-
-
King, C.A.1
-
48
-
-
33746601439
-
Chromatin relaxation in response to DNA double-strand breaks is modulated by a novel ATM- and KAP-1 dependent pathway
-
16862143
-
Ziv Y, Bielopolski D, Galanty Y, Lukas C, Taya Y, Schultz DC, et al. Chromatin relaxation in response to DNA double-strand breaks is modulated by a novel ATM- and KAP-1 dependent pathway. Nat Cell Biol. (2006) 8:870–6. 10.1038/ncb144616862143
-
(2006)
Nat Cell Biol
, vol.8
, pp. 870-876
-
-
Ziv, Y.1
Bielopolski, D.2
Galanty, Y.3
Lukas, C.4
Taya, Y.5
Schultz, D.C.6
-
49
-
-
84861748047
-
Roles of Kruppel-associated Box (KRAB)-associated Co-repressor KAP1 Ser-473 phosphorylation in DNA damage response
-
22496453
-
Hu C, Zhang S, Gao X, Gao X, Xu X, Lv Y, et al. Roles of Kruppel-associated Box (KRAB)-associated Co-repressor KAP1 Ser-473 phosphorylation in DNA damage response. J Biol Chem. (2012) 287:18937–52. 10.1074/jbc.M111.31326222496453
-
(2012)
J Biol Chem
, vol.287
, pp. 18937-18952
-
-
Hu, C.1
Zhang, S.2
Gao, X.3
Gao, X.4
Xu, X.5
Lv, Y.6
-
50
-
-
0033013839
-
Detection of influenza virus induced DNA damage by comet assay
-
10366773
-
Vijaya Lakshmi AN, Ramana MV, Vijayashree B, Ahuja YR, Sharma G. Detection of influenza virus induced DNA damage by comet assay. Mutat Res. (1999) 442:53–8. 10.1016/S1383-5718(99)00058-310366773
-
(1999)
Mutat Res
, vol.442
, pp. 53-58
-
-
Vijaya Lakshmi, A.N.1
Ramana, M.V.2
Vijayashree, B.3
Ahuja, Y.R.4
Sharma, G.5
-
51
-
-
84937726095
-
Influenza infection induces host DNA damage and dynamic DNA damage responses during tissue regeneration
-
25809161
-
Li N, Parrish M, Chan TK, Yin L, Rai P, Yoshiyuki Y, et al. Influenza infection induces host DNA damage and dynamic DNA damage responses during tissue regeneration. Cell Mol Life Sci. (2015) 72:2973–88. 10.1007/s00018-015-1879-125809161
-
(2015)
Cell Mol Life Sci
, vol.72
, pp. 2973-2988
-
-
Li, N.1
Parrish, M.2
Chan, T.K.3
Yin, L.4
Rai, P.5
Yoshiyuki, Y.6
-
52
-
-
33646342149
-
Differential roles of MDA5 and RIG-I helicases in the recognition of RNA viruses
-
16625202
-
Kato H, Takeuchi O, Sato S, Yoneyama M, Yamamoto M, Matsui K, et al. Differential roles of MDA5 and RIG-I helicases in the recognition of RNA viruses. Nature (2006) 441:101–5. 10.1038/nature0473416625202
-
(2006)
Nature
, vol.441
, pp. 101-105
-
-
Kato, H.1
Takeuchi, O.2
Sato, S.3
Yoneyama, M.4
Yamamoto, M.5
Matsui, K.6
-
53
-
-
75749140581
-
RIG-I detects viral genomic RNA during negative-strand RNA virus infection
-
20144762
-
Rehwinkel J, Tan CP, Goubau D, Schulz O, Pichlmair A, Bier K, et al. RIG-I detects viral genomic RNA during negative-strand RNA virus infection. Cell (2010) 140:397–408. 10.1016/j.cell.2010.01.02020144762
-
(2010)
Cell
, vol.140
, pp. 397-408
-
-
Rehwinkel, J.1
Tan, C.P.2
Goubau, D.3
Schulz, O.4
Pichlmair, A.5
Bier, K.6
-
54
-
-
0030664277
-
PKR–a protein kinase regulated by double-stranded RNA
-
9375375
-
Clemens MJ. PKR–a protein kinase regulated by double-stranded RNA. Int J Biochem Cell Biol. (1997) 29:945–9. 10.1016/S1357-2725(96)00169-09375375
-
(1997)
Int J Biochem Cell Biol
, vol.29
, pp. 945-949
-
-
Clemens, M.J.1
-
55
-
-
23244461479
-
p38 mitogen-activated protein kinase-dependent hyperinduction of tumor necrosis factor alpha expression in response to avian influenza virus H5N1
-
16051807
-
Lee DC, Cheung CY, Law AH, Mok CK, Peiris M, Lau AS. p38 mitogen-activated protein kinase-dependent hyperinduction of tumor necrosis factor alpha expression in response to avian influenza virus H5N1. J Virol. (2005) 79:10147–54. 10.1128/JVI.79.16.10147-10154.200516051807
-
(2005)
J Virol
, vol.79
, pp. 10147-10154
-
-
Lee, D.C.1
Cheung, C.Y.2
Law, A.H.3
Mok, C.K.4
Peiris, M.5
Lau, A.S.6
-
56
-
-
84858750449
-
Protein kinase PKR catalytic activity is required for the PKR-dependent activation of mitogen-activated protein kinases and amplification of interferon beta induction following virus infection
-
22381929
-
Taghavi N, Samuel CE. Protein kinase PKR catalytic activity is required for the PKR-dependent activation of mitogen-activated protein kinases and amplification of interferon beta induction following virus infection. Virology (2012) 427:208–16. 10.1016/j.virol.2012.01.02922381929
-
(2012)
Virology
, vol.427
, pp. 208-216
-
-
Taghavi, N.1
Samuel, C.E.2
-
57
-
-
84891706700
-
Inhibition of p38 mitogen-activated protein kinase impairs influenza virus-induced primary and secondary host gene responses and protects mice from lethal H5N1 infection
-
24189062
-
Borgeling Y, Schmolke M, Viemann D, Nordhoff C, Roth J, Ludwig S. Inhibition of p38 mitogen-activated protein kinase impairs influenza virus-induced primary and secondary host gene responses and protects mice from lethal H5N1 infection. J Biol Chem. (2014) 289:13–27. 10.1074/jbc.M113.46923924189062
-
(2014)
J Biol Chem
, vol.289
, pp. 13-27
-
-
Borgeling, Y.1
Schmolke, M.2
Viemann, D.3
Nordhoff, C.4
Roth, J.5
Ludwig, S.6
-
58
-
-
0028022750
-
A novel kinase cascade triggered by stress and heat shock that stimulates MAPKAP kinase-2 and phosphorylation of the small heat shock proteins
-
Rouse J, Cohen P, Trigon S, Morange M, Alonso-Llamazares A, Zamanillo D, et al. A novel kinase cascade triggered by stress and heat shock that stimulates MAPKAP kinase-2 and phosphorylation of the small heat shock proteins. Cell (1994) 786:1027–1037. 10.1016/0092-8674(94)90277-1
-
(1994)
Cell
, vol.786
, pp. 1027-1037
-
-
Rouse, J.1
Cohen, P.2
Trigon, S.3
Morange, M.4
Alonso-Llamazares, A.5
Zamanillo, D.6
-
59
-
-
84885453116
-
The p38-MSK1 signaling cascade influences cytokine production through CREB and C/EBP factors in human neutrophils
-
24038085
-
Mayer TZ, Simard FA, Cloutier A, Vardhan H, Dubois CM, McDonald PP. The p38-MSK1 signaling cascade influences cytokine production through CREB and C/EBP factors in human neutrophils. J Immunol. (2013) 191:4299–307. 10.4049/jimmunol.130111724038085
-
(2013)
J Immunol
, vol.191
, pp. 4299-4307
-
-
Mayer, T.Z.1
Simard, F.A.2
Cloutier, A.3
Vardhan, H.4
Dubois, C.M.5
McDonald, P.P.6
-
60
-
-
84879065824
-
Phosphorylation of KRAB-associated protein 1 (KAP1) at Tyr-449, Tyr-458, and Tyr-517 by nuclear tyrosine kinases inhibits the association of KAP1 and heterochromatin protein 1alpha (HP1alpha) with heterochromatin
-
23645696
-
Kubota S, Fukumoto Y, Aoyama K, Ishibashi K, Yuki R, Morinaga T, et al. Phosphorylation of KRAB-associated protein 1 (KAP1) at Tyr-449, Tyr-458, and Tyr-517 by nuclear tyrosine kinases inhibits the association of KAP1 and heterochromatin protein 1alpha (HP1alpha) with heterochromatin. J Biol Chem. (2013) 288:17871–83. 10.1074/jbc.M112.43775623645696
-
(2013)
J Biol Chem
, vol.288
, pp. 17871-17883
-
-
Kubota, S.1
Fukumoto, Y.2
Aoyama, K.3
Ishibashi, K.4
Yuki, R.5
Morinaga, T.6
-
61
-
-
4344574540
-
Large-scale characterization of HeLa cell nuclear phosphoproteins
-
15302935
-
Beausoleil SA, Jedrychowski M, Schwartz D, Elias JE, Villen J, Li J, et al. Large-scale characterization of HeLa cell nuclear phosphoproteins. Proc Natl Acad Sci USA. (2004) 101:12130–5. 10.1073/pnas.040472010115302935
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 12130-12135
-
-
Beausoleil, S.A.1
Jedrychowski, M.2
Schwartz, D.3
Elias, J.E.4
Villen, J.5
Li, J.6
-
62
-
-
33847782587
-
Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry
-
17287340
-
Molina H, Horn DM, Tang N, Mathivanan S, Pandey A. Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry. Proc Natl Acad Sci USA. (2007) 104:2199–204. 10.1073/pnas.061121710417287340
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 2199-2204
-
-
Molina, H.1
Horn, D.M.2
Tang, N.3
Mathivanan, S.4
Pandey, A.5
-
63
-
-
84924721649
-
A KAP1 phosphorylation switch controls MyoD function during skeletal muscle differentiation
-
25737281
-
Singh K, Cassano M, Planet E, Sebastian S, Jang SM, Sohi G, et al. A KAP1 phosphorylation switch controls MyoD function during skeletal muscle differentiation. Genes Dev. (2015) 29:513–25. 10.1101/gad.254532.11425737281
-
(2015)
Genes Dev
, vol.29
, pp. 513-525
-
-
Singh, K.1
Cassano, M.2
Planet, E.3
Sebastian, S.4
Jang, S.M.5
Sohi, G.6
-
64
-
-
80052689126
-
Kruppel-associated box-associated protein 1 negatively regulates TNF-alpha-induced NF-kappaB transcriptional activity by influencing the interactions among STAT3, p300, and NF-kappaB/p65
-
21810609
-
Kamitani S, Togi S, Ikeda O, Nakasuji M, Sakauchi A, Sekine Y, et al. Kruppel-associated box-associated protein 1 negatively regulates TNF-alpha-induced NF-kappaB transcriptional activity by influencing the interactions among STAT3, p300, and NF-kappaB/p65. J Immunol. (2011) 187:2476–83. 10.4049/jimmunol.100324321810609
-
(2011)
J Immunol
, vol.187
, pp. 2476-2483
-
-
Kamitani, S.1
Togi, S.2
Ikeda, O.3
Nakasuji, M.4
Sakauchi, A.5
Sekine, Y.6
-
65
-
-
84869080573
-
KAP1/TRIM28: an inhibitor of IRF5 function in inflammatory macrophages
-
22995936
-
Eames HL, Saliba DG, Krausgruber T, Lanfrancotti A, Ryzhakov G, Udalova IA. KAP1/TRIM28: an inhibitor of IRF5 function in inflammatory macrophages. Immunobiology (2012) 217:1315–24. 10.1016/j.imbio.2012.07.02622995936
-
(2012)
Immunobiology
, vol.217
, pp. 1315-1324
-
-
Eames, H.L.1
Saliba, D.G.2
Krausgruber, T.3
Lanfrancotti, A.4
Ryzhakov, G.5
Udalova, I.A.6
-
66
-
-
84939483126
-
TRIM28 as a novel transcriptional elongation factor
-
26293668
-
Bunch H, Calderwood SK. TRIM28 as a novel transcriptional elongation factor. BMC Mol Biol. (2015) 16:14. 10.1186/s12867-015-0040-x26293668
-
(2015)
BMC Mol Biol
, vol.16
, pp. 14
-
-
Bunch, H.1
Calderwood, S.K.2
-
67
-
-
84953635651
-
KAP1 Recruitment of the 7SK snRNP Complex to Promoters Enables Transcription Elongation by RNA Polymerase, I
-
26725010
-
McNamara RP, Reeder JE, McMillan EA, Bacon CW, McCann JL, D'Orso I. KAP1 Recruitment of the 7SK snRNP Complex to Promoters Enables Transcription Elongation by RNA Polymerase, I. I Mol Cell (2016) 61:39–53. 10.1016/j.molcel.2015.11.00426725010
-
(2016)
I Mol Cell
, vol.61
, pp. 39-53
-
-
McNamara, R.P.1
Reeder, J.E.2
McMillan, E.A.3
Bacon, C.W.4
McCann, J.L.5
D'Orso, I.6
-
68
-
-
15144348173
-
Transcription elongation factor P-TEFb is required for HIV-1 tat transactivation in vitro
-
9334325
-
Zhu Y, Pe'ery T, Peng J, Ramanathan Y, Marshall N, Marshall T, et al. Transcription elongation factor P-TEFb is required for HIV-1 tat transactivation in vitro. Genes Dev. (1997) 11:2622–32. 10.1101/gad.11.20.26229334325
-
(1997)
Genes Dev
, vol.11
, pp. 2622-2632
-
-
Zhu, Y.1
Pe'ery, T.2
Peng, J.3
Ramanathan, Y.4
Marshall, N.5
Marshall, T.6
-
69
-
-
84957044762
-
Genome-wide analysis of KAP1, the 7SK snRNP complex, and RNA polymerase II
-
26981421
-
McNamara RP, Guzman C, Reeder JE, D'Orso I. Genome-wide analysis of KAP1, the 7SK snRNP complex, and RNA polymerase II. Genom Data (2016) 7:250–5. 10.1016/j.gdata.2016.01.01926981421
-
(2016)
Genom Data
, vol.7
, pp. 250-255
-
-
McNamara, R.P.1
Guzman, C.2
Reeder, J.E.3
D'Orso, I.4
-
70
-
-
66449099742
-
Unraveling the mystery of swine influenza virus
-
19524497
-
Wang TT, Palese P. Unraveling the mystery of swine influenza virus. Cell (2009) 137:983–5. 10.1016/j.cell.2009.05.03219524497
-
(2009)
Cell
, vol.137
, pp. 983-985
-
-
Wang, T.T.1
Palese, P.2
-
71
-
-
0018733916
-
Effects of the catalytic subunit of cAMP-dependent protein kinase (type II) from reticulocytes and bovine heart muscle on protein phosphorylation and protein synthesis in reticulocyte lysates
-
224039
-
Levin D, Ernst V, London IM. Effects of the catalytic subunit of cAMP-dependent protein kinase (type II) from reticulocytes and bovine heart muscle on protein phosphorylation and protein synthesis in reticulocyte lysates. J Biol Chem. (1979) 254:7935–41. 224039
-
(1979)
J Biol Chem
, vol.254
, pp. 7935-7941
-
-
Levin, D.1
Ernst, V.2
London, I.M.3
-
72
-
-
77954856078
-
Protein kinase R contributes to immunity against specific viruses by regulating interferon mRNA integrity
-
20478537
-
Schulz O, Pichlmair A, Rehwinkel J, Rogers NC, Scheuner D, Kato H, et al. Protein kinase R contributes to immunity against specific viruses by regulating interferon mRNA integrity. Cell Host Microbe (2010) 7:354–61. 10.1016/j.chom.2010.04.00720478537
-
(2010)
Cell Host Microbe
, vol.7
, pp. 354-361
-
-
Schulz, O.1
Pichlmair, A.2
Rehwinkel, J.3
Rogers, N.C.4
Scheuner, D.5
Kato, H.6
-
73
-
-
67650917895
-
Influenza B virus ribonucleoprotein is a potent activator of the antiviral kinase PKR
-
19521506
-
Dauber B, Martinez-Sobrido L, Schneider J, Hai R, Waibler Z, Kalinke U, et al. Influenza B virus ribonucleoprotein is a potent activator of the antiviral kinase PKR. PLoS Pathog. (2009) 5:e1000473. 10.1371/journal.ppat.100047319521506
-
(2009)
PLoS Pathog
, vol.5
, pp. e1000473
-
-
Dauber, B.1
Martinez-Sobrido, L.2
Schneider, J.3
Hai, R.4
Waibler, Z.5
Kalinke, U.6
|