-
1
-
-
77954075537
-
Emergence and pathogenicity of highly virulent Cryptococcus gattii genotypes in the northwest United States
-
Byrnes EJ, 3rd, et al. (2010) Emergence and pathogenicity of highly virulent Cryptococcus gattii genotypes in the northwest United States. PLoS Pathog 6:e1000850.
-
(2010)
PLoS Pathog
, vol.6
-
-
Byrnes, E.J.1
-
2
-
-
84907193791
-
Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak
-
Gire SK, et al. (2014) Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak. Science 345:1369–1372.
-
(2014)
Science
, vol.345
, pp. 1369-1372
-
-
Gire, S.K.1
-
3
-
-
84941638909
-
Genomic investigations of evolutionary dynamics and epistasis in microbial evolution experiments
-
Jerison ER, Desai MM (2015) Genomic investigations of evolutionary dynamics and epistasis in microbial evolution experiments. Curr Opin Genet Dev 35:33–39.
-
(2015)
Curr Opin Genet Dev
, vol.35
, pp. 33-39
-
-
Jerison, E.R.1
Desai, M.M.2
-
4
-
-
84937884710
-
Parent-progeny sequencing indicates higher mutation rates in heterozygotes
-
Yang S, et al. (2015) Parent-progeny sequencing indicates higher mutation rates in heterozygotes. Nature 523:463–467.
-
(2015)
Nature
, vol.523
, pp. 463-467
-
-
Yang, S.1
-
5
-
-
84960846818
-
Sex speeds adaptation by altering the dynamics of molecular evolution
-
McDonald MJ, Rice DP, Desai MM (2016) Sex speeds adaptation by altering the dynamics of molecular evolution. Nature 531:233–236.
-
(2016)
Nature
, vol.531
, pp. 233-236
-
-
McDonald, M.J.1
Rice, D.P.2
Desai, M.M.3
-
6
-
-
84979905215
-
Heterozygote advantage is a common outcome of adaptation in Saccharomyces cerevisiae
-
Sellis D, Kvitek DJ, Dunn B, Sherlock G, Petrov DA (2016) Heterozygote advantage is a common outcome of adaptation in Saccharomyces cerevisiae. Genetics 203: 1401–1413.
-
(2016)
Genetics
, vol.203
, pp. 1401-1413
-
-
Sellis, D.1
Kvitek, D.J.2
Dunn, B.3
Sherlock, G.4
Petrov, D.A.5
-
7
-
-
84956638991
-
High mutational rates of large-scale duplication and deletion in Daphnia pulex
-
Keith N, et al. (2016) High mutational rates of large-scale duplication and deletion in Daphnia pulex. Genome Res 26:60–69.
-
(2016)
Genome Res
, vol.26
, pp. 60-69
-
-
Keith, N.1
-
8
-
-
85032940362
-
Genome dynamics of hybrid Saccharomyces cerevisiae during vegetative and meiotic divisions
-
Dutta A, et al. (2017) Genome dynamics of hybrid Saccharomyces cerevisiae during vegetative and meiotic divisions. G3 (Bethesda) 7:3669–3679.
-
(2017)
G3 (Bethesda)
, vol.7
, pp. 3669-3679
-
-
Dutta, A.1
-
9
-
-
84992449490
-
Microevolutionary traits and comparative population genomics of the emerging pathogenic fungus Cryptococcus gattii
-
Farrer RA, et al. (2016) Microevolutionary traits and comparative population genomics of the emerging pathogenic fungus Cryptococcus gattii. Philos Trans R Soc Lond B Biol Sci 371:20160021.
-
(2016)
Philos Trans R Soc Lond B Biol Sci
, vol.371
, pp. 20160021
-
-
Farrer, R.A.1
-
10
-
-
15844412621
-
Sex increases the efficacy of natural selection in experimental yeast populations
-
Goddard MR, Godfray HC, Burt A (2005) Sex increases the efficacy of natural selection in experimental yeast populations. Nature 434:636–640.
-
(2005)
Nature
, vol.434
, pp. 636-640
-
-
Goddard, M.R.1
Godfray, H.C.2
Burt, A.3
-
11
-
-
33750627298
-
Sexual reproduction and the evolution of microbial pathogens
-
Heitman J (2006) Sexual reproduction and the evolution of microbial pathogens. Curr Biol 16:R711–R725.
-
(2006)
Curr Biol
, vol.16
, pp. R711-R725
-
-
Heitman, J.1
-
12
-
-
84938313385
-
Loss of heterozygosity: What is it good for?
-
Ryland GL, et al.; Australian Ovarian Cancer Study Group (2015) Loss of heterozygosity: What is it good for? BMC Med Genomics 8:45.
-
(2015)
BMC Med Genomics
, vol.8
, pp. 45
-
-
Ryland, G.L.1
-
13
-
-
84868214089
-
Estimating the human mutation rate using autozygosity in a founder population
-
Campbell CD, et al. (2012) Estimating the human mutation rate using autozygosity in a founder population. Nat Genet 44:1277–1281.
-
(2012)
Nat Genet
, vol.44
, pp. 1277-1281
-
-
Campbell, C.D.1
-
14
-
-
84871502341
-
Hidden killers: Human fungal infections
-
Brown GD, et al. (2012) Hidden killers: Human fungal infections. Sci Transl Med 4: 165rv13.
-
(2012)
Sci Transl Med
, vol.4
-
-
Brown, G.D.1
-
17
-
-
33846466508
-
Epidemiology of invasive candidiasis: A persistent public health problem
-
Pfaller MA, Diekema DJ (2007) Epidemiology of invasive candidiasis: A persistent public health problem. Clin Microbiol Rev 20:133–163.
-
(2007)
Clin Microbiol Rev
, vol.20
, pp. 133-163
-
-
Pfaller, M.A.1
Diekema, D.J.2
-
18
-
-
2442629464
-
The diploid genome sequence of Candida albicans
-
Jones T, et al. (2004) The diploid genome sequence of Candida albicans. Proc Natl Acad Sci USA 101:7329–7334.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 7329-7334
-
-
Jones, T.1
-
19
-
-
77955617560
-
A human-curated annotation of the Candida albicans genome
-
Braun BR, et al. (2005) A human-curated annotation of the Candida albicans genome. PLoS Genet 1:36–57.
-
(2005)
PLoS Genet
, vol.1
, pp. 36-57
-
-
Braun, B.R.1
-
20
-
-
84883626672
-
Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure
-
Muzzey D, Schwartz K, Weissman JS, Sherlock G (2013) Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure. Genome Biol 14:R97.
-
(2013)
Genome Biol
, vol.14
, pp. R97
-
-
Muzzey, D.1
Schwartz, K.2
Weissman, J.S.3
Sherlock, G.4
-
21
-
-
59049091695
-
Loss of heterozygosity in commensal isolates of the asexual diploid yeast Candida albicans
-
Diogo D, Bouchier C, d’Enfert C, Bougnoux ME (2009) Loss of heterozygosity in commensal isolates of the asexual diploid yeast Candida albicans. Fungal Genet Biol 46:159–168.
-
(2009)
Fungal Genet Biol
, vol.46
, pp. 159-168
-
-
Diogo, D.1
Bouchier, C.2
d’Enfert, C.3
Bougnoux, M.E.4
-
22
-
-
80052563657
-
Stress alters rates and types of loss of heterozygosity in Candida albicans
-
Forche A, et al. (2011) Stress alters rates and types of loss of heterozygosity in Candida albicans. mBio 2:e00129-11.
-
(2011)
mBio
, vol.2
, pp. e00129-e00211
-
-
Forche, A.1
-
23
-
-
80455127325
-
Stress-induced loss of heterozygosity in Candida: A possible missing link in the ability to evolve
-
Rosenberg SM (2011) Stress-induced loss of heterozygosity in Candida: A possible missing link in the ability to evolve. mBio 2:e00200-11.
-
(2011)
mBio
, vol.2
, pp. e00200-e00211
-
-
Rosenberg, S.M.1
-
24
-
-
84923925533
-
Genetic and phenotypic intra-species variation in Candida albicans
-
Hirakawa MP, et al. (2015) Genetic and phenotypic intra-species variation in Candida albicans. Genome Res 25:413–425.
-
(2015)
Genome Res
, vol.25
, pp. 413-425
-
-
Hirakawa, M.P.1
-
25
-
-
84905739964
-
Large-scale chromosomal changes and associated fitness consequences in pathogenic fungi
-
Forche A (2014) Large-scale chromosomal changes and associated fitness consequences in pathogenic fungi. Curr Fungal Infect Rep 8:163–170.
-
(2014)
Curr Fungal Infect Rep
, vol.8
, pp. 163-170
-
-
Forche, A.1
-
26
-
-
84876719128
-
Ploidy variation as an adaptive mechanism in human pathogenic fungi
-
Morrow CA, Fraser JA (2013) Ploidy variation as an adaptive mechanism in human pathogenic fungi. Semin Cell Dev Biol 24:339–346.
-
(2013)
Semin Cell Dev Biol
, vol.24
, pp. 339-346
-
-
Morrow, C.A.1
Fraser, J.A.2
-
27
-
-
33746506280
-
Aneuploidy and isochromosome formation in drug-resistant Candida albicans
-
Selmecki A, Forche A, Berman J (2006) Aneuploidy and isochromosome formation in drug-resistant Candida albicans. Science 313:367–370.
-
(2006)
Science
, vol.313
, pp. 367-370
-
-
Selmecki, A.1
Forche, A.2
Berman, J.3
-
28
-
-
79955648358
-
High-frequency genetic contents variations in clinical Candida albicans isolates
-
Yang F, et al. (2011) High-frequency genetic contents variations in clinical Candida albicans isolates. Biol Pharm Bull 34:624–631.
-
(2011)
Biol Pharm Bull
, vol.34
, pp. 624-631
-
-
Yang, F.1
-
29
-
-
33846314406
-
Chromosome instability in Candida albicans
-
Rustchenko E (2007) Chromosome instability in Candida albicans. FEMS Yeast Res 7: 2–11.
-
(2007)
FEMS Yeast Res
, vol.7
, pp. 2-11
-
-
Rustchenko, E.1
-
30
-
-
85005916167
-
Rapid mechanisms for generating genome diversity: Whole ploidy shifts, aneuploidy, and loss of heterozygosity
-
Bennett RJ, Forche A, Berman J (2014) Rapid mechanisms for generating genome diversity: Whole ploidy shifts, aneuploidy, and loss of heterozygosity. Cold Spring Harb Perspect Med 4:a019604.
-
(2014)
Cold Spring Harb Perspect Med
, vol.4
, pp. a019604
-
-
Bennett, R.J.1
Forche, A.2
Berman, J.3
-
31
-
-
70349321199
-
Evolution in Candida albicans populations during a single passage through a mouse host
-
Forche A, Magee PT, Selmecki A, Berman J, May G (2009) Evolution in Candida albicans populations during a single passage through a mouse host. Genetics 182: 799–811.
-
(2009)
Genetics
, vol.182
, pp. 799-811
-
-
Forche, A.1
Magee, P.T.2
Selmecki, A.3
Berman, J.4
May, G.5
-
32
-
-
84964695807
-
The evolution of drug resistance in clinical isolates of Candida albicans
-
Ford CB, et al. (2015) The evolution of drug resistance in clinical isolates of Candida albicans. eLife 4:e00662.
-
(2015)
eLife
, vol.4
, pp. e00662
-
-
Ford, C.B.1
-
33
-
-
34249995958
-
Heterozygosity of genes on the sex chromosome regulates Candida albicans virulence
-
Wu W, Lockhart SR, Pujol C, Srikantha T, Soll DR (2007) Heterozygosity of genes on the sex chromosome regulates Candida albicans virulence. Mol Microbiol 64:1587–1604.
-
(2007)
Mol Microbiol
, vol.64
, pp. 1587-1604
-
-
Wu, W.1
Lockhart, S.R.2
Pujol, C.3
Srikantha, T.4
Soll, D.R.5
-
34
-
-
80051899071
-
An iron homeostasis regulatory circuit with reciprocal roles in Candida albicans commensalism and pathogenesis
-
Chen C, Pande K, French SD, Tuch BB, Noble SM (2011) An iron homeostasis regulatory circuit with reciprocal roles in Candida albicans commensalism and pathogenesis. Cell Host Microbe 10:118–135.
-
(2011)
Cell Host Microbe
, vol.10
, pp. 118-135
-
-
Chen, C.1
Pande, K.2
French, S.D.3
Tuch, B.B.4
Noble, S.M.5
-
35
-
-
11844253276
-
Gastric colonization of Candida albicans differs in mice fed commercial and purified diets
-
Yamaguchi N, et al. (2005) Gastric colonization of Candida albicans differs in mice fed commercial and purified diets. J Nutr 135:109–115.
-
(2005)
J Nutr
, vol.135
, pp. 109-115
-
-
Yamaguchi, N.1
-
36
-
-
17844406907
-
Temporal events in the intravenous challenge model for experimental Candida albicans infections in female mice
-
MacCallum DM, Odds FC (2005) Temporal events in the intravenous challenge model for experimental Candida albicans infections in female mice. Mycoses 48:151–161.
-
(2005)
Mycoses
, vol.48
, pp. 151-161
-
-
MacCallum, D.M.1
Odds, F.C.2
-
37
-
-
84914689868
-
Pilon: An integrated tool for comprehensive microbial variant detection and genome assembly improvement
-
Walker BJ, et al. (2014) Pilon: An integrated tool for comprehensive microbial variant detection and genome assembly improvement. PLoS One 9:e112963.
-
(2014)
PLoS One
, vol.9
-
-
Walker, B.J.1
-
38
-
-
84875634162
-
Integrative Genomics Viewer (IGV): High-performance genomics data visualization and exploration
-
Thorvaldsdóttir H, Robinson JT, Mesirov JP (2013) Integrative Genomics Viewer (IGV): High-performance genomics data visualization and exploration. Brief Bioinform 14: 178–192.
-
(2013)
Brief Bioinform
, vol.14
, pp. 178-192
-
-
Thorvaldsdóttir, H.1
Robinson, J.T.2
Mesirov, J.P.3
-
40
-
-
48249133274
-
A genome-wide view of the spectrum of spontaneous mutations in yeast
-
Lynch M, et al. (2008) A genome-wide view of the spectrum of spontaneous mutations in yeast. Proc Natl Acad Sci USA 105:9272–9277.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 9272-9277
-
-
Lynch, M.1
-
41
-
-
78049433266
-
The baker’s yeast diploid genome is remarkably stable in vegetative growth and meiosis
-
Nishant KT, et al. (2010) The baker’s yeast diploid genome is remarkably stable in vegetative growth and meiosis. PLoS Genet 6:e1001109.
-
(2010)
PLoS Genet
, vol.6
-
-
Nishant, K.T.1
-
42
-
-
67650064592
-
Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation lines
-
Keightley PD, et al. (2009) Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation lines. Genome Res 19:1195–1201.
-
(2009)
Genome Res
, vol.19
, pp. 1195-1201
-
-
Keightley, P.D.1
-
43
-
-
85053049800
-
Single-base mutation
-
John Wiley and Sons, Chichester, UK
-
Graur D (2008) Single-base mutation. Encyclopedia of Life Sciences (John Wiley and Sons, Chichester, UK).
-
(2008)
Encyclopedia of Life Sciences
-
-
Graur, D.1
-
44
-
-
84941668361
-
The spontaneous mutation rate in the fission yeast Schizosaccharomyces pombe
-
Farlow A, et al. (2015) The spontaneous mutation rate in the fission yeast Schizosaccharomyces pombe. Genetics 201:737–744.
-
(2015)
Genetics
, vol.201
, pp. 737-744
-
-
Farlow, A.1
-
45
-
-
84940940103
-
Distinct stages during colonization of the mouse gastrointestinal tract by Candida albicans
-
Prieto D, Pla J (2015) Distinct stages during colonization of the mouse gastrointestinal tract by Candida albicans. Front Microbiol 6:792.
-
(2015)
Front Microbiol
, vol.6
, pp. 792
-
-
Prieto, D.1
Pla, J.2
-
46
-
-
0343340439
-
Genetic structure of typical and atypical populations of Candida albicans from Africa
-
Forche A, Schönian G, Gräser Y, Vilgalys R, Mitchell TG (1999) Genetic structure of typical and atypical populations of Candida albicans from Africa. Fungal Genet Biol 28:107–125.
-
(1999)
Fungal Genet Biol
, vol.28
, pp. 107-125
-
-
Forche, A.1
Schönian, G.2
Gräser, Y.3
Vilgalys, R.4
Mitchell, T.G.5
-
47
-
-
0029914127
-
Molecular markers reveal that population structure of the human pathogen Candida albicans exhibits both clonality and recombination
-
Gräser Y, et al. (1996) Molecular markers reveal that population structure of the human pathogen Candida albicans exhibits both clonality and recombination. Proc Natl Acad Sci USA 93:12473–12477.
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 12473-12477
-
-
Gräser, Y.1
-
48
-
-
0041817555
-
The population genetics of clonal and partially clonal diploids
-
Balloux F, Lehmann L, de Meeûs T (2003) The population genetics of clonal and partially clonal diploids. Genetics 164:1635–1644.
-
(2003)
Genetics
, vol.164
, pp. 1635-1644
-
-
Balloux, F.1
Lehmann, L.2
De Meeûs, T.3
-
49
-
-
84923164527
-
Crossovers are associated with mutation and biased gene conversion at recombination hotspots
-
Arbeithuber B, Betancourt AJ, Ebner T, Tiemann-Boege I (2015) Crossovers are associated with mutation and biased gene conversion at recombination hotspots. Proc Natl Acad Sci USA 112:2109–2114.
-
(2015)
Proc Natl Acad Sci USA
, vol.112
, pp. 2109-2114
-
-
Arbeithuber, B.1
Betancourt, A.J.2
Ebner, T.3
Tiemann-Boege, I.4
-
50
-
-
84870218426
-
Mutations arising during repair of chromosome breaks
-
Malkova A, Haber JE (2012) Mutations arising during repair of chromosome breaks. Annu Rev Genet 46:455–473.
-
(2012)
Annu Rev Genet
, vol.46
, pp. 455-473
-
-
Malkova, A.1
Haber, J.E.2
-
51
-
-
74949098361
-
Heterozygosity and mutation rate: Evidence for an interaction and its implications: The potential for meiotic gene conversions to influence both mutation rate and distribution
-
Amos W (2010) Heterozygosity and mutation rate: Evidence for an interaction and its implications: The potential for meiotic gene conversions to influence both mutation rate and distribution. BioEssays 32:82–90.
-
(2010)
BioEssays
, vol.32
, pp. 82-90
-
-
Amos, W.1
-
52
-
-
33751378568
-
Recombination hotspots flank the Cryptococcus mating-type locus: Implications for the evolution of a fungal sex chromosome
-
Hsueh YP, Idnurm A, Heitman J (2006) Recombination hotspots flank the Cryptococcus mating-type locus: Implications for the evolution of a fungal sex chromosome. PLoS Genet 2:e184.
-
(2006)
PLoS Genet
, vol.2
-
-
Hsueh, Y.P.1
Idnurm, A.2
Heitman, J.3
-
53
-
-
79960554665
-
Evidence for a high mutation rate at rapidly evolving yeast centromeres
-
Bensasson D (2011) Evidence for a high mutation rate at rapidly evolving yeast centromeres. BMC Evol Biol 11:211.
-
(2011)
BMC Evol Biol
, vol.11
, pp. 211
-
-
Bensasson, D.1
-
54
-
-
57149094856
-
Hypermutability of damaged single-strand DNA formed at double-strand breaks and uncapped telomeres in yeast Saccharomyces cerevisiae
-
Yang Y, Sterling J, Storici F, Resnick MA, Gordenin DA (2008) Hypermutability of damaged single-strand DNA formed at double-strand breaks and uncapped telomeres in yeast Saccharomyces cerevisiae. PLoS Genet 4:e1000264.
-
(2008)
PLoS Genet
, vol.4
-
-
Yang, Y.1
Sterling, J.2
Storici, F.3
Resnick, M.A.4
Gordenin, D.A.5
-
55
-
-
84937030619
-
Real-time evolution of a subtelomeric gene family in Candida albicans
-
Anderson MZ, Wigen LJ, Burrack LS, Berman J (2015) Real-time evolution of a subtelomeric gene family in Candida albicans. Genetics 200:907–919.
-
(2015)
Genetics
, vol.200
, pp. 907-919
-
-
Anderson, M.Z.1
Wigen, L.J.2
Burrack, L.S.3
Berman, J.4
-
56
-
-
84960947592
-
Candida albicans repetitive elements display epigenetic diversity and plasticity
-
Freire-Benéitez V, Price RJ, Tarrant D, Berman J, Buscaino A (2016) Candida albicans repetitive elements display epigenetic diversity and plasticity. Sci Rep 6:22989.
-
(2016)
Sci Rep
, vol.6
, pp. 22989
-
-
Freire-Benéitez, V.1
Price, R.J.2
Tarrant, D.3
Berman, J.4
Buscaino, A.5
-
57
-
-
3843076217
-
Centromeric DNA sequences in the pathogenic yeast Candida albicans are all different and unique
-
Sanyal K, Baum M, Carbon J (2004) Centromeric DNA sequences in the pathogenic yeast Candida albicans are all different and unique. Proc Natl Acad Sci USA 101: 11374–11379.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 11374-11379
-
-
Sanyal, K.1
Baum, M.2
Carbon, J.3
-
58
-
-
34548742303
-
Centromere size and position in Candida albicans are evolutionarily conserved independent of DNA sequence heterogeneity
-
Mishra PK, Baum M, Carbon J (2007) Centromere size and position in Candida albicans are evolutionarily conserved independent of DNA sequence heterogeneity. Mol Genet Genomics 278:455–465.
-
(2007)
Mol Genet Genomics
, vol.278
, pp. 455-465
-
-
Mishra, P.K.1
Baum, M.2
Carbon, J.3
-
59
-
-
3042720475
-
Genome evolution in yeasts
-
Dujon B, et al. (2004) Genome evolution in yeasts. Nature 430:35–44.
-
(2004)
Nature
, vol.430
, pp. 35-44
-
-
Dujon, B.1
-
60
-
-
63849097305
-
The enigma of the major repeat sequence of Candida albicans
-
Chibana H, Magee PT (2009) The enigma of the major repeat sequence of Candida albicans. Future Microbiol 4:171–179.
-
(2009)
Future Microbiol
, vol.4
, pp. 171-179
-
-
Chibana, H.1
Magee, P.T.2
-
61
-
-
0034521382
-
Fine-resolution physical mapping of genomic diversity in Candida albicans
-
Chibana H, Beckerman JL, Magee PT (2000) Fine-resolution physical mapping of genomic diversity in Candida albicans. Genome Res 10:1865–1877.
-
(2000)
Genome Res
, vol.10
, pp. 1865-1877
-
-
Chibana, H.1
Beckerman, J.L.2
Magee, P.T.3
-
62
-
-
18044363302
-
Effect of the major repeat sequence on chromosome loss in Candida albicans
-
Lephart PR, Chibana H, Magee PT (2005) Effect of the major repeat sequence on chromosome loss in Candida albicans. Eukaryot Cell 4:733–741.
-
(2005)
Eukaryot Cell
, vol.4
, pp. 733-741
-
-
Lephart, P.R.1
Chibana, H.2
Magee, P.T.3
-
63
-
-
33845771244
-
Effect of the major repeat sequence on mitotic recombination in Candida albicans
-
Lephart PR, Magee PT (2006) Effect of the major repeat sequence on mitotic recombination in Candida albicans. Genetics 174:1737–1744.
-
(2006)
Genetics
, vol.174
, pp. 1737-1744
-
-
Lephart, P.R.1
Magee, P.T.2
-
64
-
-
39749164061
-
Discovering the secrets of the Candida albicans agglutinin-like sequence (ALS) gene family—A sticky pursuit
-
Hoyer LL, Green CB, Oh SH, Zhao X (2008) Discovering the secrets of the Candida albicans agglutinin-like sequence (ALS) gene family—A sticky pursuit. Med Mycol 46:1–15.
-
(2008)
Med Mycol
, vol.46
, pp. 1-15
-
-
Hoyer, L.L.1
Green, C.B.2
Oh, S.H.3
Zhao, X.4
-
65
-
-
15844394804
-
Functional specificity of Candida albicans Als3p proteins and clade specificity of ALS3 alleles discriminated by the number of copies of the tandem repeat sequence in the central domain
-
Oh SH, et al. (2005) Functional specificity of Candida albicans Als3p proteins and clade specificity of ALS3 alleles discriminated by the number of copies of the tandem repeat sequence in the central domain. Microbiology 151:673–681.
-
(2005)
Microbiology
, vol.151
, pp. 673-681
-
-
Oh, S.H.1
-
66
-
-
34547609737
-
Analysis of ALS5 and ALS6 allelic variability in a geographically diverse collection of Candida albicans isolates
-
Zhao X, et al. (2007) Analysis of ALS5 and ALS6 allelic variability in a geographically diverse collection of Candida albicans isolates. Fungal Genet Biol 44:1298–1309.
-
(2007)
Fungal Genet Biol
, vol.44
, pp. 1298-1309
-
-
Zhao, X.1
-
67
-
-
0142011066
-
Allelic variation in the contiguous loci encoding Candida albicans ALS5, ALS1 and ALS9
-
Zhao X, Pujol C, Soll DR, Hoyer LL (2003) Allelic variation in the contiguous loci encoding Candida albicans ALS5, ALS1 and ALS9. Microbiology 149:2947–2960.
-
(2003)
Microbiology
, vol.149
, pp. 2947-2960
-
-
Zhao, X.1
Pujol, C.2
Soll, D.R.3
Hoyer, L.L.4
-
68
-
-
47749142093
-
Mutations in the multi-drug resistance regulator MRR1, followed by loss of heterozygosity, are the main cause of MDR1 overexpression in fluconazole-resistant Candida albicans strains
-
Dunkel N, Blass J, Rogers PD, Morschhäuser J (2008) Mutations in the multi-drug resistance regulator MRR1, followed by loss of heterozygosity, are the main cause of MDR1 overexpression in fluconazole-resistant Candida albicans strains. Mol Microbiol 69:827–840.
-
(2008)
Mol Microbiol
, vol.69
, pp. 827-840
-
-
Dunkel, N.1
Blass, J.2
Rogers, P.D.3
Morschhäuser, J.4
-
69
-
-
33646171879
-
A mutation in Tac1p, a transcription factor regulating CDR1 and CDR2, is coupled with loss of heterozygosity at chromosome 5 to mediate antifungal resistance in Candida albicans
-
Coste A, et al. (2006) A mutation in Tac1p, a transcription factor regulating CDR1 and CDR2, is coupled with loss of heterozygosity at chromosome 5 to mediate antifungal resistance in Candida albicans. Genetics 172:2139–2156.
-
(2006)
Genetics
, vol.172
, pp. 2139-2156
-
-
Coste, A.1
-
70
-
-
41749113291
-
An isochromosome confers drug resistance in vivo by amplification of two genes, ERG11 and TAC1
-
Selmecki A, Gerami-Nejad M, Paulson C, Forche A, Berman J (2008) An isochromosome confers drug resistance in vivo by amplification of two genes, ERG11 and TAC1. Mol Microbiol 68:624–641.
-
(2008)
Mol Microbiol
, vol.68
, pp. 624-641
-
-
Selmecki, A.1
Gerami-Nejad, M.2
Paulson, C.3
Forche, A.4
Berman, J.5
-
71
-
-
84995376529
-
Analysis of repair mechanisms following an induced double-strand break uncovers recessive deleterious alleles in the Candida albicans diploid genome
-
Feri A, et al. (2016) Analysis of repair mechanisms following an induced double-strand break uncovers recessive deleterious alleles in the Candida albicans diploid genome. mBio 7:e01109-16.
-
(2016)
mBio
, vol.7
, pp. e01109-e01116
-
-
Feri, A.1
-
72
-
-
79952273242
-
Break-induced replication is highly inaccurate
-
Deem A, et al. (2011) Break-induced replication is highly inaccurate. PLoS Biol 9: e1000594.
-
(2011)
PLoS Biol
, vol.9
-
-
Deem, A.1
-
73
-
-
74549138184
-
Indel-associated mutation rate varies with mating system in flowering plants
-
Hollister JD, Ross-Ibarra J, Gaut BS (2010) Indel-associated mutation rate varies with mating system in flowering plants. Mol Biol Evol 27:409–416.
-
(2010)
Mol Biol Evol
, vol.27
, pp. 409-416
-
-
Hollister, J.D.1
Ross-Ibarra, J.2
Gaut, B.S.3
-
74
-
-
51349155028
-
Single-nucleotide mutation rate increases close to insertions/ deletions in eukaryotes
-
Tian D, et al. (2008) Single-nucleotide mutation rate increases close to insertions/ deletions in eukaryotes. Nature 455:105–108.
-
(2008)
Nature
, vol.455
, pp. 105-108
-
-
Tian, D.1
-
75
-
-
70349329456
-
The polymerase eta translesion synthesis DNA polymerase acts independently of the mismatch repair system to limit mutagenesis caused by 7,8-dihydro-8-oxoguanine in yeast
-
Mudrak SV, Welz-Voegele C, Jinks-Robertson S (2009) The polymerase eta translesion synthesis DNA polymerase acts independently of the mismatch repair system to limit mutagenesis caused by 7,8-dihydro-8-oxoguanine in yeast. Mol Cell Biol 29: 5316–5326.
-
(2009)
Mol Cell Biol
, vol.29
, pp. 5316-5326
-
-
Mudrak, S.V.1
Welz-Voegele, C.2
Jinks-Robertson, S.3
-
76
-
-
0035854676
-
DNA damage control by novel DNA polymerases: Translesion replication and mutagenesis
-
Livneh Z (2001) DNA damage control by novel DNA polymerases: Translesion replication and mutagenesis. J Biol Chem 276:25639–25642.
-
(2001)
J Biol Chem
, vol.276
, pp. 25639-25642
-
-
Livneh, Z.1
-
77
-
-
84942345939
-
Error-prone repair of DNA double-strand breaks
-
Rodgers K, McVey M (2016) Error-prone repair of DNA double-strand breaks. J Cell Physiol 231:15–24.
-
(2016)
J Cell Physiol
, vol.231
, pp. 15-24
-
-
Rodgers, K.1
McVey, M.2
-
78
-
-
70350017855
-
Widespread occurrence of chromosomal aneuploidy following the routine production of Candida albicans mutants
-
Arbour M, et al. (2009) Widespread occurrence of chromosomal aneuploidy following the routine production of Candida albicans mutants. FEMS Yeast Res 9: 1070–1077.
-
(2009)
FEMS Yeast Res
, vol.9
, pp. 1070-1077
-
-
Arbour, M.1
-
79
-
-
84874773315
-
Shuttle vectors for facile gap repair cloning and integration into a neutral locus in Candida albicans
-
Gerami-Nejad M, Zacchi LF, McClellan M, Matter K, Berman J (2013) Shuttle vectors for facile gap repair cloning and integration into a neutral locus in Candida albicans. Microbiology 159:565–579.
-
(2013)
Microbiology
, vol.159
, pp. 565-579
-
-
Gerami-Nejad, M.1
Zacchi, L.F.2
McClellan, M.3
Matter, K.4
Berman, J.5
-
80
-
-
84888246100
-
Parasexuality and ploidy change in Candida tropicalis
-
Seervai RN, Jones SK, Jr, Hirakawa MP, Porman AM, Bennett RJ (2013) Parasexuality and ploidy change in Candida tropicalis. Eukaryot Cell 12:1629–1640.
-
(2013)
Eukaryot Cell
, vol.12
, pp. 1629-1640
-
-
Seervai, R.N.1
Jones, S.K.2
Hirakawa, M.P.3
Porman, A.M.4
Bennett, R.J.5
-
81
-
-
61949349322
-
Property differences among the four major Candida albicans strain clades
-
MacCallum DM, et al. (2009) Property differences among the four major Candida albicans strain clades. Eukaryot Cell 8:373–387.
-
(2009)
Eukaryot Cell
, vol.8
, pp. 373-387
-
-
MacCallum, D.M.1
-
82
-
-
84884619829
-
The yeast environmental stress response regulates mutagenesis induced by proteotoxic stress
-
Shor E, Fox CA, Broach JR (2013) The yeast environmental stress response regulates mutagenesis induced by proteotoxic stress. PLoS Genet 9:e1003680.
-
(2013)
PLoS Genet
, vol.9
-
-
Shor, E.1
Fox, C.A.2
Broach, J.R.3
-
84
-
-
84924405710
-
Environmentally responsive genome-wide accumulation of de novo Arabidopsis thaliana mutations and epimutations
-
Jiang C, et al. (2014) Environmentally responsive genome-wide accumulation of de novo Arabidopsis thaliana mutations and epimutations. Genome Res 24:1821–1829.
-
(2014)
Genome Res
, vol.24
, pp. 1821-1829
-
-
Jiang, C.1
-
85
-
-
85049679960
-
Rapid phenotypic and genotypic diversification after exposure to the oral host niche in Candida albicans
-
Forche A, et al. (2018) Rapid phenotypic and genotypic diversification after exposure to the oral host niche in Candida albicans. Genetics 209:725–741.
-
(2018)
Genetics
, vol.209
, pp. 725-741
-
-
Forche, A.1
-
86
-
-
78751621346
-
Genomic evidence of repeat-induced point mutation (RIP) in filamentous ascomycetes
-
Clutterbuck AJ (2011) Genomic evidence of repeat-induced point mutation (RIP) in filamentous ascomycetes. Fungal Genet Biol 48:306–326.
-
(2011)
Fungal Genet Biol
, vol.48
, pp. 306-326
-
-
Clutterbuck, A.J.1
-
87
-
-
84933059966
-
Comparative genomics of Saccharomyces cerevisiae natural isolates for bioenergy production
-
Wohlbach DJ, et al. (2014) Comparative genomics of Saccharomyces cerevisiae natural isolates for bioenergy production. Genome Biol Evol 6:2557–2566.
-
(2014)
Genome Biol Evol
, vol.6
, pp. 2557-2566
-
-
Wohlbach, D.J.1
-
88
-
-
50849102293
-
A catalog of neutral and deleterious polymorphism in yeast
-
Doniger SW, et al. (2008) A catalog of neutral and deleterious polymorphism in yeast. PLoS Genet 4:e1000183.
-
(2008)
PLoS Genet
, vol.4
-
-
Doniger, S.W.1
-
89
-
-
85040978047
-
Adaptive mistranslation accelerates the evolution of fluconazole resistance and induces major genomic and gene expression alterations in Candida albicans
-
Weil T, et al. (2017) Adaptive mistranslation accelerates the evolution of fluconazole resistance and induces major genomic and gene expression alterations in Candida albicans. mSphere 2:e00167-17.
-
(2017)
mSphere
, vol.2
, pp. e00167-e00217
-
-
Weil, T.1
-
90
-
-
0023833017
-
Physical lengths of meiotic and mitotic gene conversion tracts in Saccharomyces cerevisiae
-
Judd SR, Petes TD (1988) Physical lengths of meiotic and mitotic gene conversion tracts in Saccharomyces cerevisiae. Genetics 118:401–410.
-
(1988)
Genetics
, vol.118
, pp. 401-410
-
-
Judd, S.R.1
Petes, T.D.2
-
91
-
-
47949108144
-
High-resolution mapping of meiotic crossovers and non-crossovers in yeast
-
Mancera E, Bourgon R, Brozzi A, Huber W, Steinmetz LM (2008) High-resolution mapping of meiotic crossovers and non-crossovers in yeast. Nature 454:479–485.
-
(2008)
Nature
, vol.454
, pp. 479-485
-
-
Mancera, E.1
Bourgon, R.2
Brozzi, A.3
Huber, W.4
Steinmetz, L.M.5
-
92
-
-
0033808667
-
A single-transformation gene function test in diploid Candida albicans
-
Enloe B, Diamond A, Mitchell AP (2000) A single-transformation gene function test in diploid Candida albicans. J Bacteriol 182:5730–5736.
-
(2000)
J Bacteriol
, vol.182
, pp. 5730-5736
-
-
Enloe, B.1
Diamond, A.2
Mitchell, A.P.3
-
93
-
-
84959218465
-
Clonal strain persistence of Candida albicans isolates from chronic mucocutaneous candidiasis patients
-
Moorhouse AJ, Rennison C, Raza M, Lilic D, Gow NA (2016) Clonal strain persistence of Candida albicans isolates from chronic mucocutaneous candidiasis patients. PLoS One 11:e0145888.
-
(2016)
PLoS One
, vol.11
-
-
Moorhouse, A.J.1
Rennison, C.2
Raza, M.3
Lilic, D.4
Gow, N.A.5
-
94
-
-
85016350482
-
Break-induced replication and genome stability
-
Sakofsky CJ, Ayyar S, Malkova A (2012) Break-induced replication and genome stability. Biomolecules 2:483–504.
-
(2012)
Biomolecules
, vol.2
, pp. 483-504
-
-
Sakofsky, C.J.1
Ayyar, S.2
Malkova, A.3
-
95
-
-
0025978949
-
Getting started with yeast
-
Sherman F (1991) Getting started with yeast. Methods Enzymol 194:3–21.
-
(1991)
Methods Enzymol
, vol.194
, pp. 3-21
-
-
Sherman, F.1
-
96
-
-
84883434044
-
Passage through the mammalian gut triggers a phenotypic switch that promotes Candida albicans commensalism
-
Pande K, Chen C, Noble SM (2013) Passage through the mammalian gut triggers a phenotypic switch that promotes Candida albicans commensalism. Nat Genet 45: 1088–1091.
-
(2013)
Nat Genet
, vol.45
, pp. 1088-1091
-
-
Pande, K.1
Chen, C.2
Noble, S.M.3
-
97
-
-
0344683235
-
-
National Research Council of the National Academies The National Academies Press, Washington, DC), 8th Ed
-
National Research Council of the National Academies (2011) Guide for the Care and Use of Laboratory Animals (The National Academies Press, Washington, DC), 8th Ed.
-
(2011)
Guide for The Care and Use of Laboratory Animals
-
-
-
99
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
Li H, et al.; 1000 Genome Project Data Processing Subgroup (2009) The Sequence Alignment/Map format and SAMtools. Bioinformatics 25:2078–2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
-
100
-
-
77956295988
-
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
-
McKenna A, et al. (2010) The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res 20:1297–1303.
-
(2010)
Genome Res
, vol.20
, pp. 1297-1303
-
-
McKenna, A.1
|