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Volumn 6, Issue 9, 2014, Pages 2557-2566

Comparative genomics of Saccharomyces cerevisiae natural isolates for bioenergy production

Author keywords

Bioenergy; Environmental stress; Genomics; Transcriptomics

Indexed keywords

ALCOHOL;

EID: 84933059966     PISSN: None     EISSN: 17596653     Source Type: Journal    
DOI: 10.1093/gbe/evu199     Document Type: Article
Times cited : (38)

References (77)
  • 1
    • 33745890277 scopus 로고    scopus 로고
    • Population structure and gene evolution in Saccharomyces cerevisiae
    • Aa E, et al. 2006. Population structure and gene evolution in Saccharomyces cerevisiae. FEMS Yeast Res. 6:702-715.
    • (2006) FEMS Yeast Res. , vol.6 , pp. 702-715
    • Aa, E.1
  • 2
    • 82255194233 scopus 로고    scopus 로고
    • Whole-genome sequencing of sake yeast Saccharomyces cerevisiae Kyokai no. 7
    • Akao T, et al. 2011. Whole-genome sequencing of sake yeast Saccharomyces cerevisiae Kyokai no. 7. DNA Res. 18:423-434.
    • (2011) DNA Res. , vol.18 , pp. 423-434
    • Akao, T.1
  • 3
    • 33947286326 scopus 로고    scopus 로고
    • Increased tolerance and conversion of inhibitors in lignocellulosic hydrolysates by Saccharomyces cerevisiae
    • Almeida JR, et al. 2007. Increased tolerance and conversion of inhibitors in lignocellulosic hydrolysates by Saccharomyces cerevisiae. J Chem Technol Biotechnol. 82:340.
    • (2007) J Chem Technol Biotechnol. , vol.82 , pp. 340
    • Almeida, J.R.1
  • 4
    • 73249135142 scopus 로고    scopus 로고
    • Genome structure of a Saccharomyces cerevisiae strain widely used in bioethanol production
    • Argueso JL, et al. 2009. Genome structure of a Saccharomyces cerevisiae strain widely used in bioethanol production. Genome Res. 19:2258-2270.
    • (2009) Genome Res. , vol.19 , pp. 2258-2270
    • Argueso, J.L.1
  • 5
    • 84864319268 scopus 로고    scopus 로고
    • Whole-genome sequencing of the efficient industrial fuel-ethanol fermentative Saccharomyces cerevisiae strain CAT-1
    • Babrzadeh F, et al. 2012. Whole-genome sequencing of the efficient industrial fuel-ethanol fermentative Saccharomyces cerevisiae strain CAT-1. Mol Genet Genomics. 287:485-494.
    • (2012) Mol Genet Genomics. , vol.287 , pp. 485-494
    • Babrzadeh, F.1
  • 6
    • 34547418221 scopus 로고    scopus 로고
    • An experimental test of evolutionary trade-offs during temperature adaptation
    • Bennett AF, Lenski RE. 2007. An experimental test of evolutionary trade-offs during temperature adaptation. Proc Natl Acad Sci USA. 104:8649-8654.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 8649-8654
    • Bennett, A.F.1    Lenski, R.E.2
  • 7
    • 55449104987 scopus 로고    scopus 로고
    • Stress-activated genomic expression changes serve a preparative role for impending stress in yeast
    • Berry DB, Gasch AP. 2008. Stress-activated genomic expression changes serve a preparative role for impending stress in yeast. Mol Biol Cell. 19:4580-4587.
    • (2008) Mol Biol Cell. , vol.19 , pp. 4580-4587
    • Berry, D.B.1    Gasch, A.P.2
  • 8
    • 79952262678 scopus 로고    scopus 로고
    • Whole-genome comparison reveals novel genetic elements that characterize the genome of industrial strains of Saccharomyces cerevisiae
    • Borneman AR, et al. 2011. Whole-genome comparison reveals novel genetic elements that characterize the genome of industrial strains of Saccharomyces cerevisiae. PLoS Genet. 7:e1001287.
    • (2011) PLoS Genet. , vol.7 , pp. e1001287
    • Borneman, A.R.1
  • 10
    • 12344269924 scopus 로고    scopus 로고
    • GO:: TermFinder-open source software for accessing gene ontology information and finding significantly enriched gene ontology terms associated with a list of genes
    • Boyle EI, et al. 2004. GO::TermFinder-open source software for accessing gene ontology information and finding significantly enriched gene ontology terms associated with a list of genes. Bioinformatics 20:3710-3715.
    • (2004) Bioinformatics , vol.20 , pp. 3710-3715
    • Boyle, E.I.1
  • 11
    • 77953139551 scopus 로고    scopus 로고
    • Rapid expansion and functional divergence of subtelomeric gene families in yeasts
    • Brown CA, Murray AW, Verstrepen KJ. 2010. Rapid expansion and functional divergence of subtelomeric gene families in yeasts. Curr Biol. 20:895-903.
    • (2010) Curr Biol. , vol.20 , pp. 895-903
    • Brown, C.A.1    Murray, A.W.2    Verstrepen, K.J.3
  • 12
    • 77950388941 scopus 로고    scopus 로고
    • Polygenic and directional regulatory evolution across pathways in Saccharomyces
    • Bullard JH, Mostovoy Y, Dudoit S, Brem RB. 2010. Polygenic and directional regulatory evolution across pathways in Saccharomyces. Proc Natl Acad Sci USA. 107:5058-5063.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 5058-5063
    • Bullard, J.H.1    Mostovoy, Y.2    Dudoit, S.3    Brem, R.B.4
  • 13
    • 79953763912 scopus 로고    scopus 로고
    • A tradeoff drives the evolution of reduced metal resistance in natural populations of yeast
    • Chang SL, Leu JY. 2011. A tradeoff drives the evolution of reduced metal resistance in natural populations of yeast. PLoS Genet. 7:e1002034.
    • (2011) PLoS Genet. , vol.7 , pp. e1002034
    • Chang, S.L.1    Leu, J.Y.2
  • 14
    • 84858588614 scopus 로고    scopus 로고
    • Saccharomyces Genome Database: The genomics resource of budding yeast
    • Cherry JM, et al. 2012. Saccharomyces Genome Database: the genomics resource of budding yeast. Nucleic Acids Res. 40:D700-D705.
    • (2012) Nucleic Acids Res. , vol.40 , pp. D700-D705
    • Cherry, J.M.1
  • 15
    • 77954532784 scopus 로고    scopus 로고
    • Multifaceted characterization of cell wall decomposition products formed during ammonia fiber expansion (AFEX) and dilute acid based pretreatments
    • Chundawat SP, et al. 2010. Multifaceted characterization of cell wall decomposition products formed during ammonia fiber expansion (AFEX) and dilute acid based pretreatments. Bioresour Technol. 101:8429-8438.
    • (2010) Bioresour Technol. , vol.101 , pp. 8429-8438
    • Chundawat, S.P.1
  • 16
    • 84890831000 scopus 로고    scopus 로고
    • Genomic sequence diversity and population structure of Saccharomyces cerevisiae assessed by RAD-seq
    • Cromie GA, et al. 2013. Genomic sequence diversity and population structure of Saccharomyces cerevisiae assessed by RAD-seq. G3 3:2163-2171.
    • (2013) G3 , vol.3 , pp. 2163-2171
    • Cromie, G.A.1
  • 17
    • 50849102293 scopus 로고    scopus 로고
    • A catalog of neutral and deleterious polymorphism in yeast
    • Doniger SW, et al. 2008. A catalog of neutral and deleterious polymorphism in yeast. PLoS Genet. 4:e1000183.
    • (2008) PLoS Genet. , vol.4 , pp. e1000183
    • Doniger, S.W.1
  • 18
    • 77951530523 scopus 로고    scopus 로고
    • Genotype to phenotype: A complex problem
    • Dowell RD, et al. 2010. Genotype to phenotype: a complex problem. Science 328:469.
    • (2010) Science , vol.328 , pp. 469
    • Dowell, R.D.1
  • 19
    • 84879489028 scopus 로고    scopus 로고
    • Adaptive laboratory evolution-principles and applications for biotechnology
    • Dragosits M, Mattanovich D. 2013. Adaptive laboratory evolution-principles and applications for biotechnology. Microb Cell Fact. 12:64.
    • (2013) Microb Cell Fact. , vol.12 , pp. 64
    • Dragosits, M.1    Mattanovich, D.2
  • 20
    • 77954280971 scopus 로고    scopus 로고
    • chipD: A web tool to design oligonucleotide probes for high-density tiling arrays
    • Dufour YS, et al. 2010. ChipD: a web tool to design oligonucleotide probes for high-density tiling arrays. Nucleic Acids Res. 38(Suppl), W321-W325.
    • (2010) Nucleic Acids Res. , vol.38 , pp. W321-W325
    • Dufour, Y.S.1
  • 21
    • 0000122573 scopus 로고
    • PHYLIP-phylogeny inference package (Version 3.2)
    • Felsenstein J. 1989. PHYLIP-phylogeny inference package (Version 3.2) Cladistics 5:164.
    • (1989) Cladistics , vol.5 , pp. 164
    • Felsenstein, J.1
  • 22
    • 84869235386 scopus 로고    scopus 로고
    • mclust version 4 for R: Normal mixture modeling for model-based clustering, classification, and density estimation
    • Department of Statistics, University of Washington, June 2012
    • Fraley C, Raftery AE, Murphy TB, Scrucca L. 2012. Mclust version 4 for R: normal mixture modeling for model-based clustering, classification, and density estimation. Technical Report no. 597, Department of Statistics, University of Washington, June 2012.
    • (2012) Technical Report No. 597
    • Fraley, C.1    Raftery, A.E.2    Murphy, T.B.3    Scrucca, L.4
  • 23
    • 79952523291 scopus 로고    scopus 로고
    • Amplification of a Zygosaccharomyces bailii DNA segment in wine yeast genomes by extrachromosomal circular DNA formation
    • Galeote V, et al. 2011. Amplification of a Zygosaccharomyces bailii DNA segment in wine yeast genomes by extrachromosomal circular DNA formation. PLoS One 6:e17872.
    • (2011) PLoS One , vol.6 , pp. e17872
    • Galeote, V.1
  • 24
    • 0036276994 scopus 로고    scopus 로고
    • Yeast genomic expression studies using DNA microarrays
    • Gasch AP. 2002. Yeast genomic expression studies using DNA microarrays. Methods Enzymol. 350:393-414.
    • (2002) Methods Enzymol. , vol.350 , pp. 393-414
    • Gasch, A.P.1
  • 25
    • 0033637153 scopus 로고    scopus 로고
    • Genomic expression programs in the response of yeast cells to environmental changes
    • Gasch AP, et al. 2000. Genomic expression programs in the response of yeast cells to environmental changes. Mol Biol Cell. 11:4241-4257.
    • (2000) Mol Biol Cell. , vol.11 , pp. 4241-4257
    • Gasch, A.P.1
  • 26
    • 1342288026 scopus 로고    scopus 로고
    • Affy-analysis of Affymetrix GeneChip data at the probe level
    • Gautier L, Cope L, Bolstad BM, Irizarry RA. 2004. Affy-analysis of Affymetrix GeneChip data at the probe level. Bioinformatics 20:307-315.
    • (2004) Bioinformatics , vol.20 , pp. 307-315
    • Gautier, L.1    Cope, L.2    Bolstad, B.M.3    Irizarry, R.A.4
  • 27
    • 28744458859 scopus 로고    scopus 로고
    • Bioconductor: Open software development for computational biology and bioinformatics
    • Gentleman RC, et al. 2004. Bioconductor: open software development for computational biology and bioinformatics. Genome Biol. 5:R80.
    • (2004) Genome Biol. , vol.5 , pp. R80
    • Gentleman, R.C.1
  • 28
    • 0037173615 scopus 로고    scopus 로고
    • Functional profiling of the Saccharomyces cerevisiae genome
    • Giaever G, et al. 2002. Functional profiling of the Saccharomyces cerevisiae genome. Nature 418:387-391.
    • (2002) Nature , vol.418 , pp. 387-391
    • Giaever, G.1
  • 29
    • 84887438140 scopus 로고    scopus 로고
    • Yeast metabolic and signaling genes are required for heat-shock survival and have little overlap with the heat-induced genes
    • Gibney PA, et al. 2013. Yeast metabolic and signaling genes are required for heat-shock survival and have little overlap with the heat-induced genes. Proc Natl Acad Sci USA. 110:E4393-E4402.
    • (2013) Proc Natl Acad Sci U S A , vol.110 , pp. E4393-E4402
    • Gibney, P.A.1
  • 30
    • 10244239321 scopus 로고    scopus 로고
    • Life with 6000 genes
    • Goffeau A, et al. 1996. Life with 6000 genes. Science 274:563-567.
    • (1996) Science , vol.274 , pp. 563-567
    • Goffeau, A.1
  • 31
    • 77953237121 scopus 로고    scopus 로고
    • Regulatory and metabolic rewiring during laboratory evolution of ethanol tolerance in E. Coli
    • Goodarzi H, et al. 2010. Regulatory and metabolic rewiring during laboratory evolution of ethanol tolerance in E. Coli. Mol Syst Biol. 6:378.
    • (2010) Mol Syst Biol. , vol.6 , pp. 378
    • Goodarzi, H.1
  • 32
    • 0026200813 scopus 로고
    • Cloning and nucleotide sequence of the KHS killer gene of Saccharomyces cerevisiae
    • Goto K, et al. 1991. Cloning and nucleotide sequence of the KHS killer gene of Saccharomyces cerevisiae. Agric Biol Chem. 55:1953-1958.
    • (1991) Agric Biol Chem. , vol.55 , pp. 1953-1958
    • Goto, K.1
  • 33
    • 79960264362 scopus 로고    scopus 로고
    • Full-length transcriptome assembly from RNA-Seq data without a reference genome
    • Grabherr MG, et al. 2011. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol. 29:644-652.
    • (2011) Nat Biotechnol. , vol.29 , pp. 644-652
    • Grabherr, M.G.1
  • 34
    • 84879493109 scopus 로고    scopus 로고
    • Genetic basis of variations in nitrogen source utilization in four wine commercial yeast strains
    • Gutierrez A, Beltran G, Warringer J, Guillamon JM. 2013. Genetic basis of variations in nitrogen source utilization in four wine commercial yeast strains. PLoS One 8:e67166.
    • (2013) PLoS One , vol.8 , pp. e67166
    • Gutierrez, A.1    Beltran, G.2    Warringer, J.3    Guillamon, J.M.4
  • 35
    • 37249016359 scopus 로고    scopus 로고
    • The reacquisition of biotin prototrophy in Saccharomyces cerevisiae involved horizontal gene transfer, gene duplication and gene clustering
    • Hall C, Dietrich FS. 2007. The reacquisition of biotin prototrophy in Saccharomyces cerevisiae involved horizontal gene transfer, gene duplication and gene clustering. Genetics 177:2293-2307.
    • (2007) Genetics , vol.177 , pp. 2293-2307
    • Hall, C.1    Dietrich, F.S.2
  • 36
    • 34447281116 scopus 로고    scopus 로고
    • Identification of target genes conferring ethanol stress tolerance to Saccharomyces cerevisiae based on DNA microarray data analysis
    • Hirasawa T, et al. 2007. Identification of target genes conferring ethanol stress tolerance to Saccharomyces cerevisiae based on DNA microarray data analysis. J Biotechnol. 131:34-44.
    • (2007) J Biotechnol. , vol.131 , pp. 34-44
    • Hirasawa, T.1
  • 37
    • 77950863293 scopus 로고    scopus 로고
    • Remarkably ancient balanced polymorphisms in a multi-locus gene network
    • Hittinger CT, et al. 2010. Remarkably ancient balanced polymorphisms in a multi-locus gene network. Nature 464:54-58.
    • (2010) Nature , vol.464 , pp. 54-58
    • Hittinger, C.T.1
  • 38
    • 84876022337 scopus 로고    scopus 로고
    • Abundant gene-by-environment interactions in gene expression reaction norms to copper within Saccharomyces cerevisiae
    • Hodgins-Davis A, Adomas AB, Warringer J, Townsend JP. 2012. Abundant gene-by-environment interactions in gene expression reaction norms to copper within Saccharomyces cerevisiae. Genome Biol Evol. 4:1061-1079.
    • (2012) Genome Biol Evol. , vol.4 , pp. 1061-1079
    • Hodgins-Davis, A.1    Adomas, A.B.2    Warringer, J.3    Townsend, J.P.4
  • 39
    • 84874284372 scopus 로고    scopus 로고
    • Adaptively evolved yeast mutants on galactose show trade-offs in carbon utilization on glucose
    • Hong KK, Nielsen J. 2013. Adaptively evolved yeast mutants on galactose show trade-offs in carbon utilization on glucose. Metab Eng. 16:78-86.
    • (2013) Metab Eng. , vol.16 , pp. 78-86
    • Hong, K.K.1    Nielsen, J.2
  • 40
    • 85030453277 scopus 로고    scopus 로고
    • Phenotypic selection of a wild Saccharomyces cerevisiae strain for simultaneous saccharification and co-fermentation of AFEX pretreated corn stover
    • Jin M, et al. 2013. Phenotypic selection of a wild Saccharomyces cerevisiae strain for simultaneous saccharification and co-fermentation of AFEX pretreated corn stover. Biotechnol Biofuels. 6:108.
    • (2013) Biotechnol Biofuels. , vol.6 , pp. 108
    • Jin, M.1
  • 41
    • 58149168840 scopus 로고    scopus 로고
    • The population genetics of dN/dS
    • Kryazhimskiy S, Plotkin JB. 2008. The population genetics of dN/dS. PLoS Genet. 4:e1000304.
    • (2008) PLoS Genet. , vol.4 , pp. e1000304
    • Kryazhimskiy, S.1    Plotkin, J.B.2
  • 42
    • 2942538300 scopus 로고    scopus 로고
    • Versatile and open software for comparing large genomes
    • Kurtz S, et al. 2004. Versatile and open software for comparing large genomes. Genome Biol. 5:R12.
    • (2004) Genome Biol. , vol.5 , pp. R12
    • Kurtz, S.1
  • 43
    • 55449107183 scopus 로고    scopus 로고
    • Variations in stress sensitivity and genomic expression in diverse S. Cerevisiae isolates
    • Kvitek DJ, Will JL, Gasch AP. 2008. Variations in stress sensitivity and genomic expression in diverse S. Cerevisiae isolates. PLoS Genet. 4:e1000223.
    • (2008) PLoS Genet. , vol.4 , pp. e1000223
    • Kvitek, D.J.1    Will, J.L.2    Gasch, A.P.3
  • 44
    • 74049138742 scopus 로고    scopus 로고
    • The impacts of pretreatment on the fermentability of pretreated lignocellulosic biomass: A comparative evaluation between ammonia fiber expansion and dilute acid pretreatment
    • Lau MW, Gunawan C, Dale BE. 2009. The impacts of pretreatment on the fermentability of pretreated lignocellulosic biomass: a comparative evaluation between ammonia fiber expansion and dilute acid pretreatment. Biotechnol Biofuels. 2:30.
    • (2009) Biotechnol Biofuels. , vol.2 , pp. 30
    • Lau, M.W.1    Gunawan, C.2    Dale, B.E.3
  • 45
    • 79251587164 scopus 로고    scopus 로고
    • Exploiting natural variation in Saccharomyces cerevisiae to identify genes for increased ethanol resistance
    • Lewis JA, et al. 2010. Exploiting natural variation in Saccharomyces cerevisiae to identify genes for increased ethanol resistance. Genetics 186:1197-1205.
    • (2010) Genetics , vol.186 , pp. 1197-1205
    • Lewis, J.A.1
  • 46
    • 84883158858 scopus 로고    scopus 로고
    • Natural variation in the yeast glucose-signaling network reveals a new role for the Mig3p transcription factor
    • Lewis JA, Gasch AP. 2012. Natural variation in the yeast glucose-signaling network reveals a new role for the Mig3p transcription factor. G3 2:1607-1612.
    • (2012) G3 , vol.2 , pp. 1607-1612
    • Lewis, J.A.1    Gasch, A.P.2
  • 47
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25:1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 48
    • 62649089109 scopus 로고    scopus 로고
    • Population genomics of domestic and wild yeasts
    • Liti G, et al. 2009. Population genomics of domestic and wild yeasts. Nature 458:337-341.
    • (2009) Nature , vol.458 , pp. 337-341
    • Liti, G.1
  • 49
    • 84866170772 scopus 로고    scopus 로고
    • Advances in quantitative trait analysis in yeast
    • Liti G, Louis EJ. 2012. Advances in quantitative trait analysis in yeast. PLoS Genet. 8:e1002912.
    • (2012) PLoS Genet. , vol.8 , pp. e1002912
    • Liti, G.1    Louis, E.J.2
  • 50
    • 79952129813 scopus 로고    scopus 로고
    • Outcrossing, mitotic recombination, and life-history trade-offs shape genome evolution in Saccharomyces cerevisiae
    • Magwene PM, et al. 2011. Outcrossing, mitotic recombination, and life-history trade-offs shape genome evolution in Saccharomyces cerevisiae. Proc Natl Acad Sci USA. 108:1987-1992.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 1987-1992
    • Magwene, P.M.1
  • 51
    • 8844252293 scopus 로고    scopus 로고
    • TigrScan and GlimmerHMM: Two open source ab initio eukaryotic gene-finders
    • Majoros WH, Pertea M, Salzberg SL. 2004. TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders. Bioinformatics 20:2878-2879.
    • (2004) Bioinformatics , vol.20 , pp. 2878-2879
    • Majoros, W.H.1    Pertea, M.2    Salzberg, S.L.3
  • 52
    • 77956295988 scopus 로고    scopus 로고
    • The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
    • McKenna A, et al. 2010. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 20:1297-1303.
    • (2010) Genome Res. , vol.20 , pp. 1297-1303
    • McKenna, A.1
  • 53
    • 0029053524 scopus 로고
    • RTM1: A member of a new family of telomeric repeated genes in yeast
    • Ness F, Aigle M. 1995. RTM1: a member of a new family of telomeric repeated genes in yeast. Genetics 140:945-956.
    • (1995) Genetics , vol.140 , pp. 945-956
    • Ness, F.1    Aigle, M.2
  • 54
    • 70349515584 scopus 로고    scopus 로고
    • Eukaryote-to-eukaryote gene transfer events revealed by the genome sequence of the wine yeast Saccharomyces cerevisiae EC1118
    • Novo M, et al. 2009. Eukaryote-to-eukaryote gene transfer events revealed by the genome sequence of the wine yeast Saccharomyces cerevisiae EC1118. Proc Natl Acad Sci USA. 106:16333-16338.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 16333-16338
    • Novo, M.1
  • 55
    • 84872250100 scopus 로고    scopus 로고
    • Coevolution trumps pleiotropy: Carbon assimilation traits are independent of metabolic network structure in budding yeast
    • Opulente DA, Morales CM, Carey LB, Rest JS. 2013. Coevolution trumps pleiotropy: carbon assimilation traits are independent of metabolic network structure in budding yeast. PLoS One 8:e54403.
    • (2013) PLoS One , vol.8 , pp. e54403
    • Opulente, D.A.1    Morales, C.M.2    Carey, L.B.3    Rest, J.S.4
  • 56
    • 70350653808 scopus 로고    scopus 로고
    • Transcriptome analysis by strand-specific sequencing of complementary DNA
    • Parkhomchuk D, et al. 2009. Transcriptome analysis by strand-specific sequencing of complementary DNA. Nucleic Acids Res. 37:e123.
    • (2009) Nucleic Acids Res. , vol.37 , pp. e123
    • Parkhomchuk, D.1
  • 57
    • 0032823523 scopus 로고    scopus 로고
    • Genome-wide analysis of DNA copy-number changes using cDNA microarrays
    • Pollack JR, et al. 1999. Genome-wide analysis of DNA copy-number changes using cDNA microarrays. Nat Genet. 23:41-46.
    • (1999) Nat Genet. , vol.23 , pp. 41-46
    • Pollack, J.R.1
  • 58
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard JK, Stephens M, Donnelly P. 2000. Inference of population structure using multilocus genotype data. Genetics 155:945-959.
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 60
    • 75249087100 scopus 로고    scopus 로고
    • edgeR: A Bioconductor package for differential expression analysis of digital gene expression data
    • Robinson MD, McCarthy DJ, Smyth GK. 2010. EdgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26:139-140.
    • (2010) Bioinformatics , vol.26 , pp. 139-140
    • Robinson, M.D.1    McCarthy, D.J.2    Smyth, G.K.3
  • 61
    • 9444225935 scopus 로고    scopus 로고
    • Java Treeview-extensible visualization of microarray data
    • Saldanha AJ. 2004. Java Treeview-extensible visualization of microarray data. Bioinformatics 20:3246-3248.
    • (2004) Bioinformatics , vol.20 , pp. 3246-3248
    • Saldanha, A.J.1
  • 62
    • 84892462175 scopus 로고    scopus 로고
    • Harnessing genetic diversity in Saccharomyces cerevisiae for fermentation of xylose in hydrolysates of alkaline hydrogen peroxide-pretreated biomass
    • Sato TK, et al. 2014. Harnessing genetic diversity in Saccharomyces cerevisiae for fermentation of xylose in hydrolysates of alkaline hydrogen peroxide-pretreated biomass. Appl Environ Microbiol. 80:540-554.
    • (2014) Appl Environ Microbiol. , vol.80 , pp. 540-554
    • Sato, T.K.1
  • 63
    • 62649126517 scopus 로고    scopus 로고
    • Comprehensive polymorphism survey elucidates population structure of Saccharomyces cerevisiae
    • Schacherer J, Shapiro JA, Ruderfer DM, Kruglyak L. 2009. Comprehensive polymorphism survey elucidates population structure of Saccharomyces cerevisiae. Nature 458:342-345.
    • (2009) Nature , vol.458 , pp. 342-345
    • Schacherer, J.1    Shapiro, J.A.2    Ruderfer, D.M.3    Kruglyak, L.4
  • 64
    • 0036203394 scopus 로고    scopus 로고
    • The Awa1 gene is required for the foam-forming phenotype and cell surface hydrophobicity of sake yeast
    • Shimoi H, et al. 2002. The Awa1 gene is required for the foam-forming phenotype and cell surface hydrophobicity of sake yeast. Appl Environ Microbiol. 68:2018-2025.
    • (2002) Appl Environ Microbiol. , vol.68 , pp. 2018-2025
    • Shimoi, H.1
  • 65
    • 84857838310 scopus 로고    scopus 로고
    • Efficient de novo assembly of large genomes using compressed data structures
    • Simpson JT, Durbin R. 2012. Efficient de novo assembly of large genomes using compressed data structures. Genome Res. 22:549-556.
    • (2012) Genome Res. , vol.22 , pp. 549-556
    • Simpson, J.T.1    Durbin, R.2
  • 66
    • 0033912181 scopus 로고    scopus 로고
    • Saccharomyces cerevisiae sigma 1278b has novel genes of the N-acetyltransferase gene superfamily required for L-proline analogue resistance
    • Takagi H, et al. 2000. Saccharomyces cerevisiae sigma 1278b has novel genes of the N-acetyltransferase gene superfamily required for L-proline analogue resistance. J Bacteriol. 182:4249-4256.
    • (2000) J Bacteriol. , vol.182 , pp. 4249-4256
    • Takagi, H.1
  • 67
    • 70149116132 scopus 로고    scopus 로고
    • Genome-wide identification of Saccharomyces cerevisiae genes required for maximal tolerance to ethanol
    • Teixeira MC, et al. 2009. Genome-wide identification of Saccharomyces cerevisiae genes required for maximal tolerance to ethanol. Appl Environ Microbiol. 75:5761-5772.
    • (2009) Appl Environ Microbiol. , vol.75 , pp. 5761-5772
    • Teixeira, M.C.1
  • 68
    • 0037572260 scopus 로고    scopus 로고
    • Population genetic variation in genome-wide gene expression
    • Townsend J. 2003. Population genetic variation in genome-wide gene expression. Mol Biol Evol. 20:955-963.
    • (2003) Mol Biol Evol. , vol.20 , pp. 955-963
    • Townsend, J.1
  • 69
    • 33646336879 scopus 로고    scopus 로고
    • Genome-wide identification of genes required for growth of Saccharomyces cerevisiae under ethanol stress
    • Van Voorst F, et al. 2006. Genome-wide identification of genes required for growth of Saccharomyces cerevisiae under ethanol stress. Yeast 23:351-359.
    • (2006) Yeast , vol.23 , pp. 351-359
    • Van Voorst, F.1
  • 70
    • 77951682635 scopus 로고    scopus 로고
    • KaKs-Calculator 2.0: A toolkit incorporating gammaseries methods and sliding window strategies
    • Wang D, et al. 2010. KaKs-Calculator 2.0: a toolkit incorporating gammaseries methods and sliding window strategies. Genomics Proteomics Bioinformatics 8:77-80.
    • (2010) Genomics Proteomics Bioinformatics , vol.8 , pp. 77-80
    • Wang, D.1
  • 71
    • 84868206362 scopus 로고    scopus 로고
    • Surprisingly diverged populations of Saccharomyces cerevisiae in natural environments remote from human activity
    • Wang QM, et al. 2012. Surprisingly diverged populations of Saccharomyces cerevisiae in natural environments remote from human activity. Mol Ecol. 21:5404-5417.
    • (2012) Mol Ecol. , vol.21 , pp. 5404-5417
    • Wang, Q.M.1
  • 72
    • 79959847334 scopus 로고    scopus 로고
    • Trait variation in yeast is defined by population history
    • Warringer J, et al. 2011. Trait variation in yeast is defined by population history. PLoS Genet. 7:e1002111.
    • (2011) PLoS Genet. , vol.7 , pp. e1002111
    • Warringer, J.1
  • 73
    • 79551470292 scopus 로고    scopus 로고
    • Enhancement of the initial rate of ethanol fermentation due to dysfunction of yeast stress response components Msn2p and/or Msn4p
    • Watanabe D, et al. 2011. Enhancement of the initial rate of ethanol fermentation due to dysfunction of yeast stress response components Msn2p and/or Msn4p. Appl Environ Microbiol. 77:934-941.
    • (2011) Appl Environ Microbiol. , vol.77 , pp. 934-941
    • Watanabe, D.1
  • 74
    • 34547913442 scopus 로고    scopus 로고
    • Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789
    • Wei W, et al. 2007. Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789. Proc Natl Acad Sci USA. 104:12825-12830.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 12825-12830
    • Wei, W.1
  • 75
    • 77953211186 scopus 로고    scopus 로고
    • Bulk segregant analysis by high-throughput sequencing reveals a novel xylose utilization gene from Saccharomyces cerevisiae
    • Wenger JW, Schwartz K, Sherlock G. 2010. Bulk segregant analysis by high-throughput sequencing reveals a novel xylose utilization gene from Saccharomyces cerevisiae. PLoS Genet. 6:e1000942.
    • (2010) PLoS Genet. , vol.6 , pp. e1000942
    • Wenger, J.W.1    Schwartz, K.2    Sherlock, G.3
  • 76
    • 77952332278 scopus 로고    scopus 로고
    • Incipient balancing selection through adaptive loss of aquaporins in natural Saccharomyces cerevisiae populations
    • Will JL, et al. 2010. Incipient balancing selection through adaptive loss of aquaporins in natural Saccharomyces cerevisiae populations. PLoS Genet. 6:e1000893.
    • (2010) PLoS Genet. , vol.6 , pp. e1000893
    • Will, J.L.1
  • 77
    • 58149337066 scopus 로고    scopus 로고
    • Comprehensive phenotypic analysis for identification of genes affecting growth under ethanol stress in Saccharomyces cerevisiae
    • Yoshikawa K, et al. 2009. Comprehensive phenotypic analysis for identification of genes affecting growth under ethanol stress in Saccharomyces cerevisiae. FEMS Yeast Res. 9:32-44.
    • (2009) FEMS Yeast Res. , vol.9 , pp. 32-44
    • Yoshikawa, K.1


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