-
1
-
-
84871235870
-
Pmt1, a Dnmt2 homolog in Schizosaccharomyces pombe, mediates tRNA methylation in response to nutrient signaling
-
Becker, M., S. Müller, W. Nellen, T. P. Jurkowski, A. Jeltsch et al., 2012 Pmt1, a Dnmt2 homolog in Schizosaccharomyces pombe, mediates tRNA methylation in response to nutrient signaling. Nucleic Acids Res. 40: 11648-11658.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 11648-11658
-
-
Becker, M.1
Müller, S.2
Nellen, W.3
Jurkowski, T.P.4
Jeltsch, A.5
-
2
-
-
0141630486
-
Retrotransposons and their recognition of pol II promoters: A comprehensive survey of the transposable elements from the complete genome sequence of Schizosaccharomyces pombe
-
Bowen, N. J., I. K. Jordan, J. A. Epstein, V. Wood, and H. L. Levin, 2003 Retrotransposons and their recognition of pol II promoters: a comprehensive survey of the transposable elements from the complete genome sequence of Schizosaccharomyces pombe. Genome Res. 13: 1984-1997.
-
(2003)
Genome Res
, vol.13
, pp. 1984-1997
-
-
Bowen, N.J.1
Jordan, I.K.2
Epstein, J.A.3
Wood, V.4
Levin, H.L.5
-
3
-
-
84863575746
-
A geographically diverse collection of Schizosaccharomyces pombe isolates shows limited phenotypic variation but extensive
-
Brown, W. R. A., G. Liti, C. Rosa, S. James, I. Roberts et al., 2011 A geographically diverse collection of Schizosaccharomyces pombe isolates shows limited phenotypic variation but extensive Karyotypic diversity. G3 1: 615-626.
-
(2011)
Karyotypic Diversity
, vol.G3
, Issue.1
, pp. 615-626
-
-
Brown, W.1
Liti, G.2
Rosa, C.3
James, S.4
Roberts, I.5
-
4
-
-
84898871225
-
Cytosine DNA methylation is found in Drosophila melanogaster but absent in Saccharomyces cerevisiae, Schizosaccharomyces pombe, and other yeast species
-
Capuano, F., M. Mülleder, R. Kok, H. J. Blom, and M. Ralser, 2014 Cytosine DNA methylation is found in Drosophila melanogaster but absent in Saccharomyces cerevisiae, Schizosaccharomyces pombe, and other yeast species. Anal. Chem. 86: 3697-3702.
-
(2014)
Anal. Chem
, vol.86
, pp. 3697-3702
-
-
Capuano, F.1
Mülleder, M.2
Kok, R.3
Blom, H.J.4
Ralser, M.5
-
5
-
-
69549116107
-
BreakDancer: An algorithm for high-resolution mapping of genomic structural variation
-
Chen, K., J. W. Wallis, M. D. McLellan, D. E. Larson, J. M. Kalicki et al., 2009 BreakDancer: an algorithm for high-resolution mapping of genomic structural variation. Nat. Methods 6: 677-681.
-
(2009)
Nat. Methods
, vol.6
, pp. 677-681
-
-
Chen, K.1
Wallis, J.W.2
McLellan, M.D.3
Larson, D.E.4
Kalicki, J.M.5
-
6
-
-
84864089075
-
Variation in base-substitution mutation in experimental and natural lineages of Caenorhabditis nematodes
-
Denver, D. R., L. J. Wilhelm, D. K. Howe, K. Gafner, P. C. Dolan et al., 2012 Variation in base-substitution mutation in experimental and natural lineages of Caenorhabditis nematodes. Genome Biol. Evol. 4: 513-522.
-
(2012)
Genome Biol. Evol
, vol.4
, pp. 513-522
-
-
Denver, D.R.1
Wilhelm, L.J.2
Howe, D.K.3
Gafner, K.4
Dolan, P.C.5
-
7
-
-
39049096818
-
Global profiling of DNA replication timing and efficiency reveals that efficient replication/firing occurs late during S-phase in S. Pombe
-
Eshaghi, M., R. K. M. Karuturi, J. Li, Z. Chu, E. T. Liu et al., 2007 Global profiling of DNA replication timing and efficiency reveals that efficient replication/firing occurs late during S-phase in S. pombe. PLoS One 2: e722.
-
(2007)
Plos One
, vol.2
-
-
Eshaghi, M.1
Karuturi, R.K.2
Li, J.3
Chu, Z.4
Liu, E.T.5
-
8
-
-
84905823992
-
Population genomics of the fission yeast Schizosaccharomyces pombe
-
Fawcett, J. A., T. Iida, S. Takuno, R. P. Sugino, T. Kado et al., 2014 Population genomics of the fission yeast Schizosaccharomyces pombe. PLoS One 9: e104241.
-
(2014)
Plos One
, vol.9
-
-
Fawcett, J.A.1
Iida, T.2
Takuno, S.3
Sugino, R.P.4
Kado, T.5
-
9
-
-
84861989206
-
Functional repurposing revealed by comparing S. Pombe and S. cerevisiae genetic interactions
-
Frost, A., M. G. Elgort, O. Brandman, C. Ives, S. R. Collins et al., 2012 Functional repurposing revealed by comparing S. pombe and S. cerevisiae genetic interactions. Cell 149: 1339-1352.
-
(2012)
Cell
, vol.149
, pp. 1339-1352
-
-
Frost, A.1
Elgort, M.G.2
Brandman, O.3
Ives, C.4
Collins, S.R.5
-
10
-
-
84922377811
-
Century-scale methylome stability in a recently diverged Arabidopsis thaliana lineage
-
Hagmann, J., C. Becker, J. Müller, O. Stegle, R. C. Meyer et al., 2015 Century-scale methylome stability in a recently diverged Arabidopsis thaliana lineage. PLoS Genet. 11: e1004920.
-
(2015)
Plos Genet
, vol.11
-
-
Hagmann, J.1
Becker, C.2
Müller, J.3
Stegle, O.4
Meyer, R.C.5
-
11
-
-
78049445172
-
Evidence that mutation is universally biased towards AT in bacteria
-
Hershberg, R., and D. A. Petrov, 2010 Evidence that mutation is universally biased towards AT in bacteria. PLoS Genet. 6: e1001115.
-
(2010)
Plos Genet
, vol.6
-
-
Hershberg, R.1
Petrov, D.A.2
-
12
-
-
84924074129
-
The genomic and phenotypic diversity of Schizosaccharomyces pombe
-
Jeffares, D. C., C. Rallis, A. Rieux, D. Speed, M. Převorovský et al., 2015 The genomic and phenotypic diversity of Schizosaccharomyces pombe. Nat. Genet. 47: 235-241.
-
(2015)
Nat. Genet
, vol.47
, pp. 235-241
-
-
Jeffares, D.C.1
Rallis, C.2
Rieux, A.3
Speed, D.4
Převorovský, M.5
-
13
-
-
84901295203
-
Estimation of the spontaneous mutation rate per nucleotide site in a Drosophila melanogaster full-sib family
-
Keightley, P. D., R. W. Ness, D. L. Halligan, and P. R. Haddrill, 2014a Estimation of the spontaneous mutation rate per nucleotide site in a Drosophila melanogaster full-sib family. Genetics 196: 313-320.
-
(2014)
Genetics
, vol.196
, pp. 313-320
-
-
Keightley, P.D.1
Ness, R.W.2
Halligan, D.L.3
Haddrill, P.R.4
-
14
-
-
84922371114
-
Estimation of the spontaneous mutation rate in Heliconius melpomene
-
Keightley, P. D., A. Pinharanda, R. W. Ness, F. Simpson, K. K. Dasmahapatra et al., 2014b Estimation of the spontaneous mutation rate in Heliconius melpomene. Mol. Biol. Evol. 32: 239-243.
-
(2014)
Mol. Biol. Evol
, vol.32
, pp. 239-243
-
-
Keightley, P.D.1
Pinharanda, A.2
Ness, R.W.3
Simpson, F.4
Dasmahapatra, K.K.5
-
15
-
-
67650064592
-
Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation lines
-
Keightley, P. D., U. Trivedi, M. Thomson, F. Oliver, S. Kumar et al., 2009 Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation lines. Genome Res. 19: 1195-1201.
-
(2009)
Genome Res
, vol.19
, pp. 1195-1201
-
-
Keightley, P.D.1
Trivedi, U.2
Thomson, M.3
Oliver, F.4
Kumar, S.5
-
16
-
-
84872021865
-
Deciphering the transcriptionalregulatory network of flocculation in Schizosaccharomyces pombe
-
Kwon, E.-J. G., A. Laderoute, K. Chatfield-Reed, L. Vachon, J. Karagiannis et al., 2012 Deciphering the transcriptionalregulatory network of flocculation in Schizosaccharomyces pombe. PLoS Genet. 8: e1003104.
-
(2012)
Plos Genet
, vol.8
-
-
Kwon, E.-J.G.1
Laderoute, A.2
Chatfield-Reed, K.3
Vachon, L.4
Karagiannis, J.5
-
17
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li, H., and R. Durbin, 2009 Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25(14): 1754-1760.
-
(2009)
Bioinformatics
, vol.25
, Issue.14
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
18
-
-
62649089109
-
Population genomics of domestic and wild yeasts
-
Liti, G., D. M. Carter, A. M. Moses, J. Warringer, L. Parts et al., 2009 Population genomics of domestic and wild yeasts. Nature 458: 337-341.
-
(2009)
Nature
, vol.458
, pp. 337-341
-
-
Liti, G.1
Carter, D.M.2
Moses, A.M.3
Warringer, J.4
Parts, L.5
-
19
-
-
84943608703
-
Background mutational features of the radiationresistant bacterium Deinococcus radiodurans
-
Long, H., S. Kucukyildirim, W. Sung, E. Williams, H. Lee et al., 2015 Background mutational features of the radiationresistant bacterium Deinococcus radiodurans. Mol. Biol. Evol. 32(9): 2383-2392.
-
(2015)
Mol. Biol. Evol
, vol.32
, Issue.9
, pp. 2383-2392
-
-
Long, H.1
Kucukyildirim, S.2
Sung, W.3
Williams, E.4
Lee, H.5
-
20
-
-
77955267919
-
The Origins of Genome Architecture
-
Sunderland, MA
-
Lynch, M., 2007 The Origins of Genome Architecture. Sinauer Associates, Sunderland, MA.
-
(2007)
Sinauer Associates
-
-
Lynch, M.1
-
21
-
-
75749103383
-
Rate, molecular spectrum, and consequences of human mutation
-
Lynch, M., 2010 Rate, molecular spectrum, and consequences of human mutation. Proc. Natl. Acad. Sci. USA 107: 961-968.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 961-968
-
-
Lynch, M.1
-
22
-
-
48249133274
-
A genome-wide view of the spectrum of spontaneous mutations in yeast
-
Lynch, M., W. Sung, K. Morris, N. Coffey, C. R. Landry et al., 2008 A genome-wide view of the spectrum of spontaneous mutations in yeast. Proc. Natl. Acad. Sci. USA 105: 9272-9277.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 9272-9277
-
-
Lynch, M.1
Sung, W.2
Morris, K.3
Coffey, N.4
Landry, C.R.5
-
24
-
-
84868028972
-
Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells
-
Marguerat, S., A. Schmidt, S. Codlin, W. Chen, R. Aebersold et al., 2012 Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells. Cell 151: 671-683.
-
(2012)
Cell
, vol.151
, pp. 671-683
-
-
Marguerat, S.1
Schmidt, A.2
Codlin, S.3
Chen, W.4
Aebersold, R.5
-
25
-
-
83355166269
-
Identification of a galactose-specific flocculin essential for non-sexual flocculation and filamentous growth in Schizosaccharomyces pombe
-
Matsuzawa, T., T. Morita, N. Tanaka, H. Tohda, and K. Takegawa, 2011 Identification of a galactose-specific flocculin essential for non-sexual flocculation and filamentous growth in Schizosaccharomyces pombe. Mol. Microbiol. 82: 1531-1544.
-
(2011)
Mol. Microbiol
, vol.82
, pp. 1531-1544
-
-
Matsuzawa, T.1
Morita, T.2
Tanaka, N.3
Tohda, H.4
Takegawa, K.5
-
26
-
-
84870709677
-
Estimate of the spontaneous mutation rate in Chlamydomonas reinhardtii
-
Ness, R. W., A. D. Morgan, N. Colegrave, and P. D. Keightley, 2012 Estimate of the spontaneous mutation rate in Chlamydomonas reinhardtii. Genetics 192: 1447-1454.
-
(2012)
Genetics
, vol.192
, pp. 1447-1454
-
-
Ness, R.W.1
Morgan, A.D.2
Colegrave, N.3
Keightley, P.D.4
-
27
-
-
74849090833
-
The rate and molecular spectrum of spontaneous mutations in Arabidopsis thaliana
-
Ossowski, S., K. Schneeberger, J. I. Lucas-Lledó, N. Warthmann, R. M. Clark et al., 2010 The rate and molecular spectrum of spontaneous mutations in Arabidopsis thaliana. Science 327: 92-94.
-
(2010)
Science
, vol.327
, pp. 92-94
-
-
Ossowski, S.1
Schneeberger, K.2
Lucas-Lledó, J.I.3
Warthmann, N.4
Clark, R.M.5
-
28
-
-
79956319465
-
Comparative functional genomics of the fission yeasts
-
Rhind, N., Z. Chen, M. Yassour, D. a. Thompson, B. J. Haas et al., 2011 Comparative functional genomics of the fission yeasts. Science 332: 930-936.
-
(2011)
Science
, vol.332
, pp. 930-936
-
-
Rhind, N.1
Chen, Z.2
Yassour, M.3
Thompson, D.A.4
Haas, B.J.5
-
29
-
-
33748288159
-
Population genomic analysis of outcrossing and recombination in yeast
-
Ruderfer, D. M., S. C. Pratt, H. S. Seidel, and L. Kruglyak, 2006 Population genomic analysis of outcrossing and recombination in yeast. Nat. Genet. 38: 1077-1081.
-
(2006)
Nat. Genet
, vol.38
, pp. 1077-1081
-
-
Ruderfer, D.M.1
Pratt, S.C.2
Seidel, H.S.3
Kruglyak, L.4
-
30
-
-
62649126517
-
Comprehensive polymorphism survey elucidates population structure of Saccharomyces cerevisiae
-
Schacherer, J., J. a. Shapiro, D. M. Ruderfer, and L. Kruglyak, 2009 Comprehensive polymorphism survey elucidates population structure of Saccharomyces cerevisiae. Nature 458: 342-345.
-
(2009)
Nature
, vol.458
, pp. 342-345
-
-
Schacherer, J.1
Shapiro, J.A.2
Ruderfer, D.M.3
Kruglyak, L.4
-
31
-
-
84881056465
-
Rates and genomic consequences of spontaneous mutational events in Drosophila melanogaster
-
Schrider, D. R., D. Houle, M. Lynch, and M. W. Hahn, 2013 Rates and genomic consequences of spontaneous mutational events in Drosophila melanogaster. Genetics 194: 937-954.
-
(2013)
Genetics
, vol.194
, pp. 937-954
-
-
Schrider, D.R.1
Houle, D.2
Lynch, M.3
Hahn, M.W.4
-
32
-
-
84936850349
-
Asymmetric context-dependent mutation patterns revealed through mutation-accumulation experiments
-
Sung, W., M. S. Ackerman, J.-F. Gout, S. F. Miller, E. Williams et al., 2015 Asymmetric context-dependent mutation patterns revealed through mutation-accumulation experiments. Mol. Biol. Evol. 32(7): 1672-1683.
-
(2015)
Mol. Biol. Evol
, vol.32
, Issue.7
, pp. 1672-1683
-
-
Sung, W.1
Ackerman, M.S.2
Gout, J.-F.3
Miller, S.F.4
Williams, E.5
-
33
-
-
84868599895
-
Drift-barrier hypothesis and mutation-rate evolution
-
Sung, W., M. S. Ackerman, S. F. Miller, T. G. Doak, and M. Lynch, 2012a Drift-barrier hypothesis and mutation-rate evolution. Proc. Natl. Acad. Sci. USA 109: 18488-18492.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 18488-18492
-
-
Sung, W.1
Ackerman, M.S.2
Miller, S.F.3
Doak, T.G.4
Lynch, M.5
-
34
-
-
84868579284
-
Extraordinary genome stability in the ciliate Paramecium tetraurelia
-
Sung, W., A. E. Tucker, T. G. Doak, E. Choi, W. K. Thomas et al., 2012b Extraordinary genome stability in the ciliate Paramecium tetraurelia. Proc. Natl. Acad. Sci. USA 109: 19339-19344.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 19339-19344
-
-
Sung, W.1
Tucker, A.E.2
Doak, T.G.3
Choi, E.4
Thomas, W.K.5
-
35
-
-
84865496959
-
Widespread existence of cytosine methylation in yeast DNA measured by gas chromatography/mass spectrometry
-
Tang, Y., X.-D. Gao, Y. Wang, B.-F. Yuan, and Y.-Q. Feng, 2012 Widespread existence of cytosine methylation in yeast DNA measured by gas chromatography/mass spectrometry. Anal. Chem. 84: 7249-7255.
-
(2012)
Anal. Chem
, vol.84
, pp. 7249-7255
-
-
Tang, Y.1
Gao, X.-D.2
Wang, Y.3
Yuan, B.-F.4
Feng, Y.-Q.5
-
36
-
-
42449128411
-
Population genomics of the wild yeast Saccharomyces paradoxus: Quantifying the life cycle
-
Tsai, I. J., D. Bensasson, A. Burt, and V. Koufopanou, 2008 Population genomics of the wild yeast Saccharomyces paradoxus: quantifying the life cycle. Proc. Natl. Acad. Sci. USA 105: 4957-4962.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 4957-4962
-
-
Tsai, I.J.1
Bensasson, D.2
Burt, A.3
Koufopanou, V.4
-
37
-
-
70350694443
-
Pindel: A pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads
-
Ye, K., M. H. Schulz, Q. Long, R. Apweiler, and Z. Ning, 2009 Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads. Bioinformatics 25: 2865-2871.
-
(2009)
Bioinformatics
, vol.25
, pp. 2865-2871
-
-
Ye, K.1
Schulz, M.H.2
Long, Q.3
Apweiler, R.4
Ning, Z.5
-
38
-
-
84901824457
-
Precise estimates of mutation rate and spectrum in yeast
-
Zhu, Y. O., M. L. Siegal, D. W. Hall, and D. A. Petrov, 2014 Precise estimates of mutation rate and spectrum in yeast. Proc. Natl. Acad. Sci. USA 111: E2310-2318.
-
(2014)
Proc. Natl. Acad. Sci. USA
, vol.111
-
-
Zhu, Y.O.1
Siegal, M.L.2
Hall, D.W.3
Petrov, D.A.4
|