-
1
-
-
77955647582
-
Gut microbiota in health and disease
-
Sekirov, I., Russell, S. L., Antunes, L. C., and Finlay, B. B. (2010) Gut microbiota in health and disease. Physiol. Rev. 90, 859-904
-
(2010)
Physiol. Rev.
, vol.90
, pp. 859-904
-
-
Sekirov, I.1
Russell, S.L.2
Antunes, L.C.3
Finlay, B.B.4
-
2
-
-
84927692256
-
The first 1000 cultured species of the human gastrointestinal microbiota
-
Rajilic-Stojanovic, M., and de Vos, W. M. (2014) The first 1000 cultured species of the human gastrointestinal microbiota. FEMS Microbiol. Rev. 38, 996-1047
-
(2014)
FEMS Microbiol. Rev.
, vol.38
, pp. 996-1047
-
-
Rajilic-Stojanovic, M.1
De Vos, W.M.2
-
3
-
-
84861978076
-
Host-gut microbiota metabolic interactions
-
Nicholson, J. K., Holmes, E., Kinross, J., Burcelin, R., Gibson, G., Jia, W., and Pettersson, S. (2012) Host-gut microbiota metabolic interactions. Science 336, 1262-1267
-
(2012)
Science
, vol.336
, pp. 1262-1267
-
-
Nicholson, J.K.1
Holmes, E.2
Kinross, J.3
Burcelin, R.4
Gibson, G.5
Jia, W.6
Pettersson, S.7
-
4
-
-
84915796530
-
The gut microbiome and the brain
-
Galland, L. (2014) The gut microbiome and the brain. J. Med. Food 17, 1261-1272
-
(2014)
J. Med. Food
, vol.17
, pp. 1261-1272
-
-
Galland, L.1
-
5
-
-
8144226856
-
The gut microbiota as an environmental factor that regulates fat storage
-
Bäckhed, F., Ding, H., Wang, T., Hooper, L. V., Koh, G. Y., Nagy, A., Semenkovich, C. F., and Gordon, J. I. (2004) The gut microbiota as an environmental factor that regulates fat storage. Proc. Natl. Acad. Sci. U S A 101, 15718-15723
-
(2004)
Proc. Natl. Acad. Sci. U S A
, vol.101
, pp. 15718-15723
-
-
Bäckhed, F.1
Ding, H.2
Wang, T.3
Hooper, L.V.4
Koh, G.Y.5
Nagy, A.6
Semenkovich, C.F.7
Gordon, J.I.8
-
6
-
-
84888201085
-
Gut microbiota, enteroendocrine functions and metabolism
-
Cani, P. D., Everard, A., and Duparc, T. (2013) Gut microbiota, enteroendocrine functions and metabolism. Curr. Opin. Pharmacol. 13, 935-940
-
(2013)
Curr. Opin. Pharmacol.
, vol.13
, pp. 935-940
-
-
Cani, P.D.1
Everard, A.2
Duparc, T.3
-
7
-
-
84883110880
-
Richness of human gut microbiome correlates with metabolic markers
-
Le Chatelier, E., Nielsen, T., Qin, J., Prifti, E., Hildebrand, F., Falony, G., Almeida, M., Arumugam, M., Batto, J-M., Kennedy, S., Leonard, P., Li, J., Burgdorf, K., Grarup, N., Jørgensen, T., Brandslund, I., Nielsen, H. B., Juncker, A. S., Bertalan, M., Levenez, F., Pons, N., Rasmussen, S., Sunagawa, S., Tap, J., Tims, S., Zoetendal, E. G., Brunak, S., Clément, K., Doré, J., Kleerebezem, M., Kristiansen, K., Renault, P., Sicheritz-Ponten, T., de Vos, W. M., Zucker, J-D., Raes, J., Hansen, T., Bork, P., Wang, J., Ehrlich, S. D., Pedersen, O., Guedon, E., Delorme, C., Layec, S., Khaci, G., van de Guchte, M., Vandemeulebrouck, G., Jamet, A., Dervyn, R., Sanchez, N., Maguin, E., Haimet, F., Winogradski, Y., Cultrone, A., Leclerc, M., Juste, C., Blottiè re, H., Pelletier, E., LePaslier, D., Artiguenave, F., Bruls, T., Weissenbach, J., Turner, K., Parkhill, J., Antolin, M., Manichanh, C., Casellas, F., Boruel, N., Varela, E., Torrejon, A., Guarner, F., Denariaz, G., Derrien, M., van Hylckama Vlieg, J. E. T., Veiga, P., Oozeer, R., Knol, J., Rescigno, M., Brechot, C., M'Rini, C., Mérieux, A., and Yamada, T. (2013) Richness of human gut microbiome correlates with metabolic markers. Nature 500, 541-546
-
(2013)
Nature
, vol.500
, pp. 541-546
-
-
Le Chatelier, E.1
Nielsen, T.2
Qin, J.3
Prifti, E.4
Hildebrand, F.5
Falony, G.6
Almeida, M.7
Arumugam, M.8
Batto, J.-M.9
Kennedy, S.10
Leonard, P.11
Li, J.12
Burgdorf, K.13
Grarup, N.14
Jørgensen, T.15
Brandslund, I.16
Nielsen, H.B.17
Juncker, A.S.18
Bertalan, M.19
Levenez, F.20
Pons, N.21
Rasmussen, S.22
Sunagawa, S.23
Tap, J.24
Tims, S.25
Zoetendal, E.G.26
Brunak, S.27
Clément, K.28
Doré, J.29
Kleerebezem, M.30
Kristiansen, K.31
Renault, P.32
Sicheritz-Ponten, T.33
De Vos, W.M.34
Zucker, J.-D.35
Raes, J.36
Hansen, T.37
Bork, P.38
Wang, J.39
Ehrlich, S.D.40
Pedersen, O.41
Guedon, E.42
Delorme, C.43
Layec, S.44
Khaci, G.45
Van De Guchte, M.46
Vandemeulebrouck, G.47
Jamet, A.48
Dervyn, R.49
Sanchez, N.50
Maguin, E.51
Haimet, F.52
Winogradski, Y.53
Cultrone, A.54
Leclerc, M.55
Juste, C.56
Blottiè Re, H.57
Pelletier, E.58
LePaslier, D.59
Artiguenave, F.60
Bruls, T.61
Weissenbach, J.62
Turner, K.63
Parkhill, J.64
Antolin, M.65
Manichanh, C.66
Casellas, F.67
Boruel, N.68
Varela, E.69
Torrejon, A.70
Guarner, F.71
Denariaz, G.72
Derrien, M.73
Van Hylckama Vlieg, J.E.T.74
Veiga, P.75
Oozeer, R.76
Knol, J.77
Rescigno, M.78
Brechot, C.79
M'Rini, C.80
Mérieux, A.81
Yamada, T.82
more..
-
8
-
-
84908608590
-
The gut microbiota, bacterial metabolites and colorectal cancer
-
Louis, P., Hold, G. L., and Flint, H. J. (2014) The gut microbiota, bacterial metabolites and colorectal cancer. Nat. Rev. Microbiol. 12, 661-672
-
(2014)
Nat. Rev. Microbiol.
, vol.12
, pp. 661-672
-
-
Louis, P.1
Hold, G.L.2
Flint, H.J.3
-
9
-
-
84855956247
-
Epigenetics and the environment: Emerging patterns and implications
-
Feil, R., and Fraga, M. F. (2012) Epigenetics and the environment: emerging patterns and implications. Nat. Rev. Genet. 13, 97-109
-
(2012)
Nat. Rev. Genet.
, vol.13
, pp. 97-109
-
-
Feil, R.1
Fraga, M.F.2
-
10
-
-
85027516743
-
TET-mediated active DNA demethylation: Mechanism, function and beyond
-
Wu, X., and Zhang, Y. (2017) TET-mediated active DNA demethylation: mechanism, function and beyond. Nat. Rev. Genet. 18: 517-534
-
(2017)
Nat. Rev. Genet.
, vol.18
, pp. 517-534
-
-
Wu, X.1
Zhang, Y.2
-
11
-
-
33847032960
-
The mammalian epigenome
-
Bernstein, B. E., Meissner, A., and Lander, E. S. (2007) The mammalian epigenome. Cell 128, 669-681
-
(2007)
Cell
, vol.128
, pp. 669-681
-
-
Bernstein, B.E.1
Meissner, A.2
Lander, E.S.3
-
12
-
-
84862248102
-
Folate and DNA methylation: A review of molecular mechanisms and the evidence for folate's role
-
Crider, K. S., Yang, T. P., Berry, R. J., and Bailey, L. B. (2012) Folate and DNA methylation: a review of molecular mechanisms and the evidence for folate's role. Adv. Nutr. 3, 21-38
-
(2012)
Adv. Nutr.
, vol.3
, pp. 21-38
-
-
Crider, K.S.1
Yang, T.P.2
Berry, R.J.3
Bailey, L.B.4
-
13
-
-
79952055276
-
Folate production by probiotic bacteria
-
Rossi, M., Amaretti, A., and Raimondi, S. (2011) Folate production by probiotic bacteria. Nutrients 3, 118-134
-
(2011)
Nutrients
, vol.3
, pp. 118-134
-
-
Rossi, M.1
Amaretti, A.2
Raimondi, S.3
-
14
-
-
58149121764
-
Quantification of folic acid in human feces after administration of Bifidobacterium probiotic strains
-
Strozzi, G. P., and Mogna, L. (2008) Quantification of folic acid in human feces after administration of Bifidobacterium probiotic strains. J. Clin. Gastroenterol. 42 (Suppl. 3), S179-S184
-
(2008)
J. Clin. Gastroenterol.
, vol.42
, pp. S179-S184
-
-
Strozzi, G.P.1
Mogna, L.2
-
15
-
-
84961393333
-
Epigenome-Microbiome crosstalk: A potential new paradigm influencing neonatal susceptibility to disease
-
Cortese, R., Lu, L., Yu, Y., Ruden, D., and Claud, E. C. (2016) Epigenome-Microbiome crosstalk: a potential new paradigm influencing neonatal susceptibility to disease. Epigenetics 11, 205-215
-
(2016)
Epigenetics
, vol.11
, pp. 205-215
-
-
Cortese, R.1
Lu, L.2
Yu, Y.3
Ruden, D.4
Claud, E.C.5
-
16
-
-
80053922802
-
Epigenetic control of the host gene by commensal bacteria in large intestinal epithelial cells
-
Takahashi, K., Sugi, Y., Nakano, K., Tsuda, M., Kurihara, K., Hosono, A., and Kaminogawa, S. (2011) Epigenetic control of the host gene by commensal bacteria in large intestinal epithelial cells. J. Biol. Chem. 286, 35755-35762
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 35755-35762
-
-
Takahashi, K.1
Sugi, Y.2
Nakano, K.3
Tsuda, M.4
Kurihara, K.5
Hosono, A.6
Kaminogawa, S.7
-
17
-
-
84945304337
-
Bacterial infection remodels the DNA methylation landscape of human dendritic cells
-
Pacis, A., Tailleux, L., Morin, A. M., Lambourne, J., MacIsaac, J. L., Yotova, V., Dumaine, A., Danckaert, A., Luca, F., Grenier, J. C., Hansen, K. D., Gicquel, B., Yu, M., Pai, A., He, C., Tung, J., Pastinen, T., Kobor, M. S., Pique-Regi, R., Gilad, Y., and Barreiro, L. B. (2015) Bacterial infection remodels the DNA methylation landscape of human dendritic cells. Genome Res. 25, 1801-1811
-
(2015)
Genome Res.
, vol.25
, pp. 1801-1811
-
-
Pacis, A.1
Tailleux, L.2
Morin, A.M.3
Lambourne, J.4
MacIsaac, J.L.5
Yotova, V.6
Dumaine, A.7
Danckaert, A.8
Luca, F.9
Grenier, J.C.10
Hansen, K.D.11
Gicquel, B.12
Yu, M.13
Pai, A.14
He, C.15
Tung, J.16
Pastinen, T.17
Kobor, M.S.18
Pique-Regi, R.19
Gilad, Y.20
Barreiro, L.B.21
more..
-
18
-
-
84961352367
-
Involvement of resistin-like molecule beta in the development of methionine-choline deficient diet-induced non-alcoholic steatohepatitis in mice
-
Okubo, H., Kushiyama, A., Sakoda, H., Nakatsu, Y., Iizuka, M., Taki, N., Fujishiro, M., Fukushima, T., Kamata, H., Nagamachi, A., Inaba, T., Nishimura, F., Katagiri, H., Asahara, T., Yoshida, Y., Chonan, O., Encinas, J., and Asano, T. (2016) Involvement of resistin-like molecule beta in the development of methionine-choline deficient diet-induced non-alcoholic steatohepatitis in mice. Sci. Rep. 6, 20157
-
(2016)
Sci. Rep.
, vol.6
, pp. 20157
-
-
Okubo, H.1
Kushiyama, A.2
Sakoda, H.3
Nakatsu, Y.4
Iizuka, M.5
Taki, N.6
Fujishiro, M.7
Fukushima, T.8
Kamata, H.9
Nagamachi, A.10
Inaba, T.11
Nishimura, F.12
Katagiri, H.13
Asahara, T.14
Yoshida, Y.15
Chonan, O.16
Encinas, J.17
Asano, T.18
-
19
-
-
85018672287
-
Microbial metabolites regulate host lipid metabolism through NR5A-Hedgehog signalling
-
Lin, C. J., and Wang, M. C. (2017) Microbial metabolites regulate host lipid metabolism through NR5A-Hedgehog signalling. Nat. Cell Biol. 19, 550-557
-
(2017)
Nat. Cell Biol.
, vol.19
, pp. 550-557
-
-
Lin, C.J.1
Wang, M.C.2
-
20
-
-
84896527392
-
Fusobacterium in colonic flora and molecular features of colorectal carcinoma
-
Tahara, T., Yamamoto, E., Suzuki, H., Maruyama, R., Chung, W., Garriga, J., Jelinek, J., Yamano, H. O., Sugai, T., An, B., Shureiqi, I., Toyota, M., Kondo, Y., Estecio, M. R., and Issa, J. P. (2014) Fusobacterium in colonic flora and molecular features of colorectal carcinoma. Cancer Res. 74, 1311-1318
-
(2014)
Cancer Res.
, vol.74
, pp. 1311-1318
-
-
Tahara, T.1
Yamamoto, E.2
Suzuki, H.3
Maruyama, R.4
Chung, W.5
Garriga, J.6
Jelinek, J.7
Yamano, H.O.8
Sugai, T.9
An, B.10
Shureiqi, I.11
Toyota, M.12
Kondo, Y.13
Estecio, M.R.14
Issa, J.P.15
-
21
-
-
85028775713
-
Potential link between Fusobacterium enrichment and DNA methylation accumulation in the inflammatory colonic mucosa in ulcerative colitis
-
Tahara, T., Hirata, I., Nakano, N., Tahara, S., Horiguchi, N., Kawamura, T., Okubo, M., Ishizuka, T., Yamada, H., Yoshida, D., Ohmori, T., Maeda, K., Komura, N., Ikuno, H., Jodai, Y., Kamano, T., Nagasaka, M., Nakagawa, Y., Tuskamoto, T., Urano, M., Shibata, T., Kuroda, M., and Ohmiya, N. (2017) Potential link between Fusobacterium enrichment and DNA methylation accumulation in the inflammatory colonic mucosa in ulcerative colitis. Oncotarget 8, 61917-61926
-
(2017)
Oncotarget
, vol.8
, pp. 61917-61926
-
-
Tahara, T.1
Hirata, I.2
Nakano, N.3
Tahara, S.4
Horiguchi, N.5
Kawamura, T.6
Okubo, M.7
Ishizuka, T.8
Yamada, H.9
Yoshida, D.10
Ohmori, T.11
Maeda, K.12
Komura, N.13
Ikuno, H.14
Jodai, Y.15
Kamano, T.16
Nagasaka, M.17
Nakagawa, Y.18
Tuskamoto, T.19
Urano, M.20
Shibata, T.21
Kuroda, M.22
Ohmiya, N.23
more..
-
22
-
-
84936847682
-
Association of Fusobacterium nucleatum with clinical and molecular features in colorectal serrated pathway
-
Ito, M., Kanno, S., Nosho, K., Sukawa, Y., Mitsuhashi, K., Kurihara, H., Igarashi, H., Takahashi, T., Tachibana, M., Takahashi, H., Yoshii, S., Takenouchi, T., Hasegawa, T., Okita, K., Hirata, K., Maruyama, R., Suzuki, H., Imai, K., Yamamoto, H., and Shinomura, Y. (2015) Association of Fusobacterium nucleatum with clinical and molecular features in colorectal serrated pathway. Int. J. Cancer 137, 1258-1268
-
(2015)
Int. J. Cancer
, vol.137
, pp. 1258-1268
-
-
Ito, M.1
Kanno, S.2
Nosho, K.3
Sukawa, Y.4
Mitsuhashi, K.5
Kurihara, H.6
Igarashi, H.7
Takahashi, T.8
Tachibana, M.9
Takahashi, H.10
Yoshii, S.11
Takenouchi, T.12
Hasegawa, T.13
Okita, K.14
Hirata, K.15
Maruyama, R.16
Suzuki, H.17
Imai, K.18
Yamamoto, H.19
Shinomura, Y.20
more..
-
23
-
-
85026371130
-
Fusobacterium nucleatum promotes chemoresistance to colorectal cancer by modulating autophagy
-
Yu, T., Guo, F., Yu, Y., Sun, T., Ma, D., Han, J., Qian, Y., Kryczek, I., Sun, D., Nagarsheth, N., Chen, Y., Chen, H., Hong, J., Zou, W., and Fang, J. Y. (2017) Fusobacterium nucleatum promotes chemoresistance to colorectal cancer by modulating autophagy. Cell 170, 548-563. e16
-
(2017)
Cell
, vol.170
, pp. 548-563e16
-
-
Yu, T.1
Guo, F.2
Yu, Y.3
Sun, T.4
Ma, D.5
Han, J.6
Qian, Y.7
Kryczek, I.8
Sun, D.9
Nagarsheth, N.10
Chen, Y.11
Chen, H.12
Hong, J.13
Zou, W.14
Fang, J.Y.15
-
24
-
-
79955579989
-
The microbiome and butyrate regulate energy metabolism and autophagy in the mammalian colon
-
Donohoe, D. R., Garge, N., Zhang, X., Sun, W., O'Connell, T. M., Bunger, M. K., and Bultman, S. J. (2011) The microbiome and butyrate regulate energy metabolism and autophagy in the mammalian colon. Cell Metab. 13, 517-526
-
(2011)
Cell Metab.
, vol.13
, pp. 517-526
-
-
Donohoe, D.R.1
Garge, N.2
Zhang, X.3
Sun, W.4
O'Connell, T.M.5
Bunger, M.K.6
Bultman, S.J.7
-
25
-
-
84952913739
-
Altered fecal short chain fatty acid composition in children with a history of Hirschsprung-associated enterocolitis
-
Demehri, F. R., Frykman, P. K., Cheng, Z., Ruan, C., Wester, T., Nordenskjold, A., Kawaguchi, A., Hui, T. T., Granstrom, A. L., Funari, V., Teitelbaum, D. H., and Group, H. C. R. (2016) Altered fecal short chain fatty acid composition in children with a history of Hirschsprung-associated enterocolitis. J. Pediatr. Surg. 51, 81-86
-
(2016)
J. Pediatr. Surg.
, vol.51
, pp. 81-86
-
-
Demehri, F.R.1
Frykman, P.K.2
Cheng, Z.3
Ruan, C.4
Wester, T.5
Nordenskjold, A.6
Kawaguchi, A.7
Hui, T.T.8
Granstrom, A.L.9
Funari, V.10
Teitelbaum, D.H.11
Group, H.C.R.12
-
26
-
-
84911993839
-
A gnotobiotic mouse model demonstrates that dietary fiber protects against colorectal tumorigenesis in a microbiota-and butyrate-dependent manner
-
Donohoe, D. R., Holley, D., Collins, L. B., Montgomery, S. A., Whitmore, A. C., Hillhouse, A., Curry, K. P., Renner, S. W., Greenwalt, A., Ryan, E. P., Godfrey, V., Heise, M. T., Threadgill, D. S., Han, A., Swenberg, J. A., Threadgill, D. W., and Bultman, S. J. (2014) A gnotobiotic mouse model demonstrates that dietary fiber protects against colorectal tumorigenesis in a microbiota-and butyrate-dependent manner. Cancer Discov. 4, 1387-1397
-
(2014)
Cancer Discov.
, vol.4
, pp. 1387-1397
-
-
Donohoe, D.R.1
Holley, D.2
Collins, L.B.3
Montgomery, S.A.4
Whitmore, A.C.5
Hillhouse, A.6
Curry, K.P.7
Renner, S.W.8
Greenwalt, A.9
Ryan, E.P.10
Godfrey, V.11
Heise, M.T.12
Threadgill, D.S.13
Han, A.14
Swenberg, J.A.15
Threadgill, D.W.16
Bultman, S.J.17
-
27
-
-
85029350217
-
Inhibition of HDAC enhances STAT acetylation, blocks NF-KappaB, and suppresses the renal inflammation and fibrosis in Npr1 haplotype Male mice
-
Kumar, P., Gogulamudi, V. R., Peryasamy, R., Raghavaraju, G., Subramania, U., and Pandey, K. N. (2017) Inhibition of HDAC enhances STAT acetylation, blocks NF-KappaB, and suppresses the renal inflammation and fibrosis in Npr1 haplotype male mice. Am. J. Physiol. Renal Physiol. 313, F781-F795
-
(2017)
Am. J. Physiol. Renal Physiol.
, vol.313
, pp. F781-F795
-
-
Kumar, P.1
Gogulamudi, V.R.2
Peryasamy, R.3
Raghavaraju, G.4
Subramania, U.5
Pandey, K.N.6
-
28
-
-
84890564250
-
Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells
-
Furusawa, Y., Obata, Y., Fukuda, S., Endo, T. A., Nakato, G., Takahashi, D., Nakanishi, Y., Uetake, C., Kato, K., Kato, T., Takahashi, M., Fukuda, N. N., Murakami, S., Miyauchi, E., Hino, S., Atarashi, K., Onawa, S., Fujimura, Y., Lockett, T., Clarke, J. M., Topping, D. L., Tomita, M., Hori, S., Ohara, O., Morita, T., Koseki, H., Kikuchi, J., Honda, K., Hase, K., and Ohno, H. (2013) Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells. Nature 504, 446-450
-
(2013)
Nature
, vol.504
, pp. 446-450
-
-
Furusawa, Y.1
Obata, Y.2
Fukuda, S.3
Endo, T.A.4
Nakato, G.5
Takahashi, D.6
Nakanishi, Y.7
Uetake, C.8
Kato, K.9
Kato, T.10
Takahashi, M.11
Fukuda, N.N.12
Murakami, S.13
Miyauchi, E.14
Hino, S.15
Atarashi, K.16
Onawa, S.17
Fujimura, Y.18
Lockett, T.19
Clarke, J.M.20
Topping, D.L.21
Tomita, M.22
Hori, S.23
Ohara, O.24
Morita, T.25
Koseki, H.26
Kikuchi, J.27
Honda, K.28
Hase, K.29
Ohno, H.30
more..
-
29
-
-
84921999201
-
Microbial-derived butyrate: An oncometabolite or tumor-suppressive metabolite?
-
Bultman, S. J., and Jobin, C. (2014) Microbial-derived butyrate: an oncometabolite or tumor-suppressive metabolite? Cell Host Microbe 16, 143-145
-
(2014)
Cell Host Microbe
, vol.16
, pp. 143-145
-
-
Bultman, S.J.1
Jobin, C.2
-
30
-
-
84945237892
-
Butyrate inhibits pro-proliferative MIR-92a by diminishing c-Myc-induced MIR-17-92a cluster transcription in human colon cancer cells
-
Hu, S., Liu, L., Chang, E. B., Wang, J. Y., and Raufman, J. P. (2015) Butyrate inhibits pro-proliferative miR-92a by diminishing c-Myc-induced miR-17-92a cluster transcription in human colon cancer cells. Mol. Cancer 14, 180
-
(2015)
Mol. Cancer
, vol.14
, pp. 180
-
-
Hu, S.1
Liu, L.2
Chang, E.B.3
Wang, J.Y.4
Raufman, J.P.5
-
31
-
-
84904543667
-
Gut microbial metabolism drives transformation of MSH2-deficient colon epithelial cells
-
Belcheva, A., Irrazabal, T., Robertson, S. J., Streutker, C., Maughan, H., Rubino, S., Moriyama, E., Copeland, J. K., Surendra, A., Kumar, S., Green, B., Geddes, K., Pezo, R. C., Navarre, W. W., Milosevic, M., Wilson, B. C., Girardin, S. E., Wolever, T. M. S., Edelmann, W., Guttman, D. S., Philpott, D. J., and Martin, A. (2014) Gut microbial metabolism drives transformation of MSH2-deficient colon epithelial cells. Cell 158, 288-299
-
(2014)
Cell
, vol.158
, pp. 288-299
-
-
Belcheva, A.1
Irrazabal, T.2
Robertson, S.J.3
Streutker, C.4
Maughan, H.5
Rubino, S.6
Moriyama, E.7
Copeland, J.K.8
Surendra, A.9
Kumar, S.10
Green, B.11
Geddes, K.12
Pezo, R.C.13
Navarre, W.W.14
Milosevic, M.15
Wilson, B.C.16
Girardin, S.E.17
Wolever, T.M.S.18
Edelmann, W.19
Guttman, D.S.20
Philpott, D.J.21
Martin, A.22
more..
-
32
-
-
84947257907
-
Metabolism and epigenetics
-
Janke, R., Dodson, A. E., and Rine, J. (2015) Metabolism and epigenetics. Annu. Rev. Cell Dev. Biol. 31, 473-496
-
(2015)
Annu. Rev. Cell Dev. Biol.
, vol.31
, pp. 473-496
-
-
Janke, R.1
Dodson, A.E.2
Rine, J.3
-
33
-
-
85003682297
-
Diet-microbiota interactions mediate global epigenetic programming in multiple host tissues
-
Krautkramer, K. A., Kreznar, J. H., Romano, K. A., Vivas, E. I., Barrett-Wilt, G. A., Rabaglia, M. E., Keller, M. P., Attie, A. D., Rey, F. E., and Denu, J. M. (2016) Diet-microbiota interactions mediate global epigenetic programming in multiple host tissues. Mol. Cell 64, 982-992
-
(2016)
Mol. Cell
, vol.64
, pp. 982-992
-
-
Krautkramer, K.A.1
Kreznar, J.H.2
Romano, K.A.3
Vivas, E.I.4
Barrett-Wilt, G.A.5
Rabaglia, M.E.6
Keller, M.P.7
Attie, A.D.8
Rey, F.E.9
Denu, J.M.10
-
34
-
-
84944112153
-
Influences of diet and the gut microbiome on epigenetic modulation in cancer and other diseases
-
Paul, B., Barnes, S., Demark-Wahnefried, W., Morrow, C., Salvador, C., Skibola, C., and Tollefsbol, T. O. (2015) Influences of diet and the gut microbiome on epigenetic modulation in cancer and other diseases. Clin. Epigenetics 7, 112
-
(2015)
Clin. Epigenetics
, vol.7
, pp. 112
-
-
Paul, B.1
Barnes, S.2
Demark-Wahnefried, W.3
Morrow, C.4
Salvador, C.5
Skibola, C.6
Tollefsbol, T.O.7
-
35
-
-
84934777321
-
Long noncoding RNA expression profiles in gut tissues constitute molecular signatures that reflect the types of microbes
-
Liang, L., Ai, L., Qian, J., Fang, J. Y., and Xu, J. (2015) Long noncoding RNA expression profiles in gut tissues constitute molecular signatures that reflect the types of microbes. Sci. Rep. 5, 11763
-
(2015)
Sci. Rep.
, vol.5
, pp. 11763
-
-
Liang, L.1
Ai, L.2
Qian, J.3
Fang, J.Y.4
Xu, J.5
-
36
-
-
84907343849
-
Functional high-throughput screening identifies the MIR-15 microRNA family as cellular restriction factors for Salmonella infection
-
Maudet, C., Mano, M., Sunkavalli, U., Sharan, M., Giacca, M., Forstner, K. U., and Eulalio, A. (2014) Functional high-throughput screening identifies the miR-15 microRNA family as cellular restriction factors for Salmonella infection. Nat Commun. 5, 4718
-
(2014)
Nat Commun.
, vol.5
, pp. 4718
-
-
Maudet, C.1
Mano, M.2
Sunkavalli, U.3
Sharan, M.4
Giacca, M.5
Forstner, K.U.6
Eulalio, A.7
-
37
-
-
84881490002
-
MicroRNAs and bacterial infection
-
Staedel, C., and Darfeuille, F. (2013) MicroRNAs and bacterial infection. Cell. Microbiol. 15, 1496-1507
-
(2013)
Cell. Microbiol.
, vol.15
, pp. 1496-1507
-
-
Staedel, C.1
Darfeuille, F.2
-
38
-
-
84926248014
-
MicroRNA let-7 modulates the immune response to Mycobacterium tuberculosis infection via control of A20, an inhibitor of the NF-kappaB pathway
-
Kumar, M., Sahu, S. K., Kumar, R., Subuddhi, A., Maji, R. K., Jana, K., Gupta, P., Raffetseder, J., Lerm, M., Ghosh, Z., van Loo, G., Beyaert, R., Gupta, U. D., Kundu, M., and Basu, J. (2015) MicroRNA let-7 modulates the immune response to Mycobacterium tuberculosis infection via control of A20, an inhibitor of the NF-kappaB pathway. Cell Host Microbe 17, 345-356
-
(2015)
Cell Host Microbe
, vol.17
, pp. 345-356
-
-
Kumar, M.1
Sahu, S.K.2
Kumar, R.3
Subuddhi, A.4
Maji, R.K.5
Jana, K.6
Gupta, P.7
Raffetseder, J.8
Lerm, M.9
Ghosh, Z.10
Van Loo, G.11
Beyaert, R.12
Gupta, U.D.13
Kundu, M.14
Basu, J.15
-
39
-
-
70349436102
-
Induction of microRNA-155 during Helicobacter pylori infection and its negative regulatory role in the inflammatory response
-
Xiao, B., Liu, Z., Li, B. S., Tang, B., Li, W., Guo, G., Shi, Y., Wang, F., Wu, Y., Tong, W. D., Guo, H., Mao, X. H., and Zou, Q. M. (2009) Induction of microRNA-155 during Helicobacter pylori infection and its negative regulatory role in the inflammatory response. J. Infect. Dis. 200, 916-925
-
(2009)
J. Infect. Dis.
, vol.200
, pp. 916-925
-
-
Xiao, B.1
Liu, Z.2
Li, B.S.3
Tang, B.4
Li, W.5
Guo, G.6
Shi, Y.7
Wang, F.8
Wu, Y.9
Tong, W.D.10
Guo, H.11
Mao, X.H.12
Zou, Q.M.13
-
40
-
-
84860830073
-
Induction of microRNA-155 is TLR-and type IV secretion system-dependent in macrophages and inhibits DNA-damage induced apoptosis
-
Koch, M., Mollenkopf, H. J., Klemm, U., and Meyer, T. F. (2012) Induction of microRNA-155 is TLR-and type IV secretion system-dependent in macrophages and inhibits DNA-damage induced apoptosis. Proc. Natl. Acad. Sci. U S A 109, E1153-E1162
-
(2012)
Proc. Natl. Acad. Sci. U S A
, vol.109
, pp. E1153-E1162
-
-
Koch, M.1
Mollenkopf, H.J.2
Klemm, U.3
Meyer, T.F.4
-
41
-
-
84874241202
-
Let-7b is involved in the inflammation and immune responses associated with Helicobacter pylori infection by targeting Toll-like receptor 4
-
Teng, G., Wang, W., Dai, Y., Wang, S., Chu, Y., Li, J., and El-Rifai, W. (2013) Let-7b is involved in the inflammation and immune responses associated with Helicobacter pylori infection by targeting Toll-like receptor 4. PLoS One 8, e56709
-
(2013)
PLoS One
, vol.8
, pp. e56709
-
-
Teng, G.1
Wang, W.2
Dai, Y.3
Wang, S.4
Chu, Y.5
Li, J.6
El-Rifai, W.7
-
42
-
-
84957554938
-
The Host Shapes the Gut Microbiota via Fecal MicroRNA
-
Liu, S., da Cunha, A. P., Rezende, R. M., Cialic, R., Wei, Z., Bry, L., Comstock, L. E., Gandhi, R., and Weiner, H. L. (2016) The Host Shapes the Gut Microbiota via Fecal MicroRNA. Cell Host Microbe 19, 32-43
-
(2016)
Cell Host Microbe
, vol.19
, pp. 32-43
-
-
Liu, S.1
Da Cunha, A.P.2
Rezende, R.M.3
Cialic, R.4
Wei, Z.5
Bry, L.6
Comstock, L.E.7
Gandhi, R.8
Weiner, H.L.9
-
43
-
-
85000363137
-
Microbiota diurnal rhythmicity programs host transcriptome oscillations
-
Thaiss, C. A., Levy, M., Korem, T., Dohnalova, L., Shapiro, H., Jaitin, D. A., David, E., Winter, D. R., Gury-BenAri, M., Tatirovsky, E., Tuganbaev, T., Federici, S., Zmora, N., Zeevi, D., Dori-Bachash, M., Pevsner-Fischer, M., Kartvelishvily, E., Brandis, A., Harmelin, A., Shibolet, O., Halpern, Z., Honda, K., Amit, I., Segal, E., and Elinav, E. (2016) Microbiota diurnal rhythmicity programs host transcriptome oscillations. Cell 167, 1495-1510. e12
-
(2016)
Cell
, vol.167
, pp. 1495-1510e12
-
-
Thaiss, C.A.1
Levy, M.2
Korem, T.3
Dohnalova, L.4
Shapiro, H.5
Jaitin, D.A.6
David, E.7
Winter, D.R.8
Gury-BenAri, M.9
Tatirovsky, E.10
Tuganbaev, T.11
Federici, S.12
Zmora, N.13
Zeevi, D.14
Dori-Bachash, M.15
Pevsner-Fischer, M.16
Kartvelishvily, E.17
Brandis, A.18
Harmelin, A.19
Shibolet, O.20
Halpern, Z.21
Honda, K.22
Amit, I.23
Segal, E.24
Elinav, E.25
more..
-
44
-
-
85029483308
-
The intestinal microbiota regulates body composition through NFIL3 and the circadian clock
-
Wang, Y., Kuang, Z., Yu, X., Ruhn, K. A., Kubo, M., and Hooper, L. V. (2017) The intestinal microbiota regulates body composition through NFIL3 and the circadian clock. Science 357, 912-916
-
(2017)
Science
, vol.357
, pp. 912-916
-
-
Wang, Y.1
Kuang, Z.2
Yu, X.3
Ruhn, K.A.4
Kubo, M.5
Hooper, L.V.6
-
45
-
-
85027063083
-
Lactobacillus reuteri induces gut intraepithelial CD4+CD8alphaalpha+ T cells
-
Cervantes-Barragan, L., Chai, J. N., Tianero, M. D., Di Luccia, B., Ahern, P. P., Merriman, J., Cortez, V. S., Caparon, M. G., Donia, M. S., Gilfillan, S., Cella, M., Gordon, J. I., Hsieh, C. S., and Colonna, M. (2017) Lactobacillus reuteri induces gut intraepithelial CD4+CD8alphaalpha+ T cells. Science 357, 806-810
-
(2017)
Science
, vol.357
, pp. 806-810
-
-
Cervantes-Barragan, L.1
Chai, J.N.2
Tianero, M.D.3
Di Luccia, B.4
Ahern, P.P.5
Merriman, J.6
Cortez, V.S.7
Caparon, M.G.8
Donia, M.S.9
Gilfillan, S.10
Cella, M.11
Gordon, J.I.12
Hsieh, C.S.13
Colonna, M.14
-
46
-
-
85027175538
-
Microbiotaactivated PPAR-gamma signaling inhibits dysbiotic Enterobacteriaceae expansion
-
Byndloss, M. X., Olsan, E. E., Rivera-Chá vez, F., Tiffany, C. R., Cevallos, S. A., Lokken, K. L., Torres, T. P., Byndloss, A. J., Faber, F., Gao, Y., Litvak, Y., Lopez, C., Xu, G., Napoli, E., Giulivi, C., Tsolis, R. M., Revzin, A., Lebrilla, C. B., and Baümler, A. J. (2017) Microbiotaactivated PPAR-gamma signaling inhibits dysbiotic Enterobacteriaceae expansion. Science 357, 570-575
-
(2017)
Science
, vol.357
, pp. 570-575
-
-
Byndloss, M.X.1
Olsan, E.E.2
Rivera-Chá Vez, F.3
Tiffany, C.R.4
Cevallos, S.A.5
Lokken, K.L.6
Torres, T.P.7
Byndloss, A.J.8
Faber, F.9
Gao, Y.10
Litvak, Y.11
Lopez, C.12
Xu, G.13
Napoli, E.14
Giulivi, C.15
Tsolis, R.M.16
Revzin, A.17
Lebrilla, C.B.18
Baümler, A.J.19
-
47
-
-
84990234576
-
Signals from the gut microbiota to distant organs in physiology and disease
-
Schroeder, B. O., and Backhed, F. (2016) Signals from the gut microbiota to distant organs in physiology and disease. Nat. Med. 22, 1079-1089
-
(2016)
Nat. Med.
, vol.22
, pp. 1079-1089
-
-
Schroeder, B.O.1
Backhed, F.2
-
48
-
-
23344442120
-
Obesity alters gut microbial ecology
-
Ley, R. E., Backhed, F., Turnbaugh, P., Lozupone, C. A., Knight, R. D., and Gordon, J. I. (2005) Obesity alters gut microbial ecology. Proc. Natl. Acad. Sci. U S A 102, 11070-11075
-
(2005)
Proc. Natl. Acad. Sci. U S A
, vol.102
, pp. 11070-11075
-
-
Ley, R.E.1
Backhed, F.2
Turnbaugh, P.3
Lozupone, C.A.4
Knight, R.D.5
Gordon, J.I.6
-
49
-
-
84908348194
-
Meta-analyses of human gut microbes associated with obesity and IBD
-
Walters, W. A., Xu, Z., and Knight, R. (2014) Meta-analyses of human gut microbes associated with obesity and IBD. FEBS Lett. 588, 4223-4233
-
(2014)
FEBS Lett.
, vol.588
, pp. 4223-4233
-
-
Walters, W.A.1
Xu, Z.2
Knight, R.3
-
50
-
-
84875369840
-
An opportunistic pathogen isolated from the gut of an obese human causes obesity in germfree mice
-
Fei, N., and Zhao, L. (2013) An opportunistic pathogen isolated from the gut of an obese human causes obesity in germfree mice. ISME J. 7, 880-884
-
(2013)
ISME J.
, vol.7
, pp. 880-884
-
-
Fei, N.1
Zhao, L.2
-
51
-
-
84933505154
-
Alteration of gut microbiota by vancomycin and bacitracin improves insulin resistance via glucagon-like peptide 1 in diet-induced obesity
-
Hwang, I., Park, Y. J., Kim, Y. R., Kim, Y. N., Ka, S., Lee, H. Y., Seong, J. K., Seok, Y. J., and Kim, J. B. (2015) Alteration of gut microbiota by vancomycin and bacitracin improves insulin resistance via glucagon-like peptide 1 in diet-induced obesity. FASEB J. 29, 2397-2411
-
(2015)
FASEB J.
, vol.29
, pp. 2397-2411
-
-
Hwang, I.1
Park, Y.J.2
Kim, Y.R.3
Kim, Y.N.4
Ka, S.5
Lee, H.Y.6
Seong, J.K.7
Seok, Y.J.8
Kim, J.B.9
-
52
-
-
84950297830
-
Non-lethal inhibition of gut microbial trimethylamine production for the treatment of atherosclerosis
-
Wang, Z., Roberts, A. B., Buffa, J. A., Levison, B. S., Zhu, W., Org, E., Gu, X., Huang, Y., Zamanian-Daryoush, M., Culley, M. K., DiDonato, A. J., Fu, X., Hazen, J. E., Krajcik, D., DiDonato, J. A., Lusis, A. J., and Hazen, S. L. (2015) Non-lethal inhibition of gut microbial trimethylamine production for the treatment of atherosclerosis. Cell 163, 1585-1595
-
(2015)
Cell
, vol.163
, pp. 1585-1595
-
-
Wang, Z.1
Roberts, A.B.2
Buffa, J.A.3
Levison, B.S.4
Zhu, W.5
Org, E.6
Gu, X.7
Huang, Y.8
Zamanian-Daryoush, M.9
Culley, M.K.10
DiDonato, A.J.11
Fu, X.12
Hazen, J.E.13
Krajcik, D.14
DiDonato, J.A.15
Lusis, A.J.16
Hazen, S.L.17
-
53
-
-
85031012310
-
The gut microbiome in atherosclerotic cardiovascular disease
-
Jie, Z., Xia, H., Zhong, S. L., Feng, Q., Li, S., Liang, S., Zhong, H., Liu, Z., Gao, Y., Zhao, H., Zhang, D., Su, Z., Fang, Z., Lan, Z., Li, J., Xiao, L., Li, J., Li, R., Li, X., Li, F., Ren, H., Huang, Y., Peng, Y., Li, G., Wen, B., Dong, B., Chen, J. Y., Geng, Q. S., Zhang, Z. W., Yang, H., Wang, J., Wang, J., Zhang, X., Madsen, L., Brix, S., Ning, G., Xu, X., Liu, X., Hou, Y., Jia, H., He, K., and Kristiansen, K. (2017) The gut microbiome in atherosclerotic cardiovascular disease. Nat. Commun. 8, 845
-
(2017)
Nat. Commun.
, vol.8
, pp. 845
-
-
Jie, Z.1
Xia, H.2
Zhong, S.L.3
Feng, Q.4
Li, S.5
Liang, S.6
Zhong, H.7
Liu, Z.8
Gao, Y.9
Zhao, H.10
Zhang, D.11
Su, Z.12
Fang, Z.13
Lan, Z.14
Li, J.15
Xiao, L.16
Li, J.17
Li, R.18
Li, X.19
Li, F.20
Ren, H.21
Huang, Y.22
Peng, Y.23
Li, G.24
Wen, B.25
Dong, B.26
Chen, J.Y.27
Geng, Q.S.28
Zhang, Z.W.29
Yang, H.30
Wang, J.31
Wang, J.32
Zhang, X.33
Madsen, L.34
Brix, S.35
Ning, G.36
Xu, X.37
Liu, X.38
Hou, Y.39
Jia, H.40
He, K.41
Kristiansen, K.42
more..
-
54
-
-
85021943188
-
Modulation of the gut microbiota impacts nonalcoholic fatty liver disease: A potential role for bile acids
-
Janssen, A. W. F., Houben, T., Katiraei, S., Dijk, W., Boutens, L., van der Bolt, N., Wang, Z., Brown, J. M., Hazen, S. L., Mandard, S., Shiri-Sverdlov, R., Kuipers, F., Willems van Dijk, K., Vervoort, J., Stienstra, R., Hooiveld, G., and Kersten, S. (2017) Modulation of the gut microbiota impacts nonalcoholic fatty liver disease: a potential role for bile acids. J. Lipid Res. 58, 1399-1416
-
(2017)
J. Lipid Res.
, vol.58
, pp. 1399-1416
-
-
Janssen, A.W.F.1
Houben, T.2
Katiraei, S.3
Dijk, W.4
Boutens, L.5
Van Der Bolt, N.6
Wang, Z.7
Brown, J.M.8
Hazen, S.L.9
Mandard, S.10
Shiri-Sverdlov, R.11
Kuipers, F.12
Willems Van Dijk, K.13
Vervoort, J.14
Stienstra, R.15
Hooiveld, G.16
Kersten, S.17
-
55
-
-
84881222178
-
Gut-liver axis and fibrosis in nonalcoholic fatty liver disease: An input for novel therapies
-
Frasinariu, O. E., Ceccarelli, S., Alisi, A., Moraru, E., and Nobili, V. (2013) Gut-liver axis and fibrosis in nonalcoholic fatty liver disease: an input for novel therapies. Dig. Liver Dis. 45, 543-551
-
(2013)
Dig. Liver Dis.
, vol.45
, pp. 543-551
-
-
Frasinariu, O.E.1
Ceccarelli, S.2
Alisi, A.3
Moraru, E.4
Nobili, V.5
-
56
-
-
80055043169
-
Nuclear factor highmobility group box1 mediating the activation of Toll-like receptor 4 signaling in hepatocytes in the early stage of nonalcoholic fatty liver disease in mice
-
Li, L., Chen, L., Hu, L., Liu, Y., Sun, H. Y., Tang, J., Hou, Y. J., Chang, Y. X., Tu, Q. Q., Feng, G. S., Shen, F., Wu, M. C., and Wang, H. Y. (2011) Nuclear factor highmobility group box1 mediating the activation of Toll-like receptor 4 signaling in hepatocytes in the early stage of nonalcoholic fatty liver disease in mice. Hepatology 54, 1620-1630
-
(2011)
Hepatology
, vol.54
, pp. 1620-1630
-
-
Li, L.1
Chen, L.2
Hu, L.3
Liu, Y.4
Sun, H.Y.5
Tang, J.6
Hou, Y.J.7
Chang, Y.X.8
Tu, Q.Q.9
Feng, G.S.10
Shen, F.11
Wu, M.C.12
Wang, H.Y.13
|