-
1
-
-
84861138884
-
Quantitative approaches to the analysis of carbohydrate-binding module function
-
Abbott, D.W., and Boraston, A.B. (2012) Quantitative approaches to the analysis of carbohydrate-binding module function. Methods Enzymol 510: 211–231.
-
(2012)
Methods Enzymol
, vol.510
, pp. 211-231
-
-
Abbott, D.W.1
Boraston, A.B.2
-
2
-
-
76449098262
-
PHENIX: a comprehensive Python-based system for macromolecular structure solution
-
Adams, P.D., Afonine, P.V., Bunkoczi, G., Chen, V.B., Davis, I.W., Echols, N., et al. (2010) PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr D Biol Crystallogr 66: 213–221.
-
(2010)
Acta Crystallogr D Biol Crystallogr
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
Afonine, P.V.2
Bunkoczi, G.3
Chen, V.B.4
Davis, I.W.5
Echols, N.6
-
3
-
-
84860273177
-
Towards automated crystallographic structure refinement with phenix.refine
-
Afonine, P.V., Grosse-Kunstleve, R.W., Echols, N., Headd, J.J., Moriarty, N.W., Mustyakimov, M., et al. (2012) Towards automated crystallographic structure refinement with phenix.refine. Acta Crystallogr D Biol Crystallogr 68: 352–367.
-
(2012)
Acta Crystallogr D Biol Crystallogr
, vol.68
, pp. 352-367
-
-
Afonine, P.V.1
Grosse-Kunstleve, R.W.2
Echols, N.3
Headd, J.J.4
Moriarty, N.W.5
Mustyakimov, M.6
-
4
-
-
84947945686
-
Privateer: software for the conformational validation of carbohydrate structures
-
Agirre, J., Iglesias-Fernandez, J., Rovira, C., Davies, G.J., Wilson, K.S., and Cowtan, K.D. (2015) Privateer: software for the conformational validation of carbohydrate structures. Nat Struct Mol Biol 22: 833–834.
-
(2015)
Nat Struct Mol Biol
, vol.22
, pp. 833-834
-
-
Agirre, J.1
Iglesias-Fernandez, J.2
Rovira, C.3
Davies, G.J.4
Wilson, K.S.5
Cowtan, K.D.6
-
5
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S.F., Gish, W., Miller, W., Myers, E.W., and Lipman, D.J. (1990) Basic local alignment search tool. J Mol Biol 215: 403–410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
6
-
-
79953759821
-
iMOSFLM: a new graphical interface for diffraction-image processing with MOSFLM
-
Battye, T.G.G., Kontogiannis, L., Johnson, O., Powell, H.R., and Leslie, A.G.W. (2011) iMOSFLM: a new graphical interface for diffraction-image processing with MOSFLM. Acta Crystallogr D 67: 271–281.
-
(2011)
Acta Crystallogr D
, vol.67
, pp. 271-281
-
-
Battye, T.G.G.1
Kontogiannis, L.2
Johnson, O.3
Powell, H.R.4
Leslie, A.G.W.5
-
7
-
-
54049116267
-
Butyrate ingestion improves hepatic glycogen storage in the re-fed rat
-
Beauvieux, M.C., Roumes, H., Robert, N., Gin, H., Rigalleau, V., and Gallis, J.L. (2008) Butyrate ingestion improves hepatic glycogen storage in the re-fed rat. BMC Physiol 8: 19.
-
(2008)
BMC Physiol
, vol.8
, pp. 19
-
-
Beauvieux, M.C.1
Roumes, H.2
Robert, N.3
Gin, H.4
Rigalleau, V.5
Gallis, J.L.6
-
8
-
-
0029818453
-
Influence of orally and rectally administered propionate on cholesterol and glucose metabolism in obese rats
-
Berggren, A.M., Nyman, E.M., Lundquist, I., and Bjorck, I.M. (1996) Influence of orally and rectally administered propionate on cholesterol and glucose metabolism in obese rats. Br J Nutr 76: 287–294.
-
(1996)
Br J Nutr
, vol.76
, pp. 287-294
-
-
Berggren, A.M.1
Nyman, E.M.2
Lundquist, I.3
Bjorck, I.M.4
-
9
-
-
84895072373
-
Resistant starch: promise for improving human health
-
Birt, D.F., Boylston, T., Hendrich, S., Jane, J.-L., Hollis, J., Li, L., et al. (2013) Resistant starch: promise for improving human health. Adv Nutr 4: 587–601.
-
(2013)
Adv Nutr
, vol.4
, pp. 587-601
-
-
Birt, D.F.1
Boylston, T.2
Hendrich, S.3
Jane, J.-L.4
Hollis, J.5
Li, L.6
-
10
-
-
84988405277
-
Systemic availability and metabolism of colonic-derived short-chain fatty acids in healthy subjects—a stable isotope study
-
Boets, E., Gomand, S., Deroover, V., Preston, L., Vermeulen, T.K., Preter, V., et al. (2017) Systemic availability and metabolism of colonic-derived short-chain fatty acids in healthy subjects—a stable isotope study. J Physiol 595: 541–555.
-
(2017)
J Physiol
, vol.595
, pp. 541-555
-
-
Boets, E.1
Gomand, S.2
Deroover, V.3
Preston, L.4
Vermeulen, T.K.5
Preter, V.6
-
11
-
-
33644855732
-
A structural and functional analysis of α-glucan recognition by family 25 and 26 carbohydrate-binding modules reveals a conserved mode of starch recognition
-
Boraston, A.B., Healey, M., Klassen, J., Ficko-Blean, E., Lammerts van Bueren, A., and Law, V. (2006) A structural and functional analysis of α-glucan recognition by family 25 and 26 carbohydrate-binding modules reveals a conserved mode of starch recognition. J Biol Chem 281: 587–598.
-
(2006)
J Biol Chem
, vol.281
, pp. 587-598
-
-
Boraston, A.B.1
Healey, M.2
Klassen, J.3
Ficko-Blean, E.4
Lammerts van Bueren, A.5
Law, V.6
-
12
-
-
84906833163
-
Disrupted intestinal microbiota and intestinal inflammation in children with cystic fibrosis and its restoration with Lactobacillus GG: a randomised clinical trial
-
Bruzzese, E., Callegari, M.L., Raia, V., Viscovo, S., Scotto, R., Ferrari, S., et al. (2014) Disrupted intestinal microbiota and intestinal inflammation in children with cystic fibrosis and its restoration with Lactobacillus GG: a randomised clinical trial. PLoS One 9: e87796.
-
(2014)
PLoS One
, vol.9
-
-
Bruzzese, E.1
Callegari, M.L.2
Raia, V.3
Viscovo, S.4
Scotto, R.5
Ferrari, S.6
-
13
-
-
84867238386
-
Multidomain carbohydrate-binding proteins involved in Bacteroides thetaiotaomicron starch metabolism
-
Cameron, E.A., Maynard, M.A., Smith, C.J., Smith, T.J., Koropatkin, N.M., and Martens, E.C. (2012) Multidomain carbohydrate-binding proteins involved in Bacteroides thetaiotaomicron starch metabolism. J Biol Chem 287: 34614–34625.
-
(2012)
J Biol Chem
, vol.287
, pp. 34614-34625
-
-
Cameron, E.A.1
Maynard, M.A.2
Smith, C.J.3
Smith, T.J.4
Koropatkin, N.M.5
Martens, E.C.6
-
14
-
-
85009318573
-
-
In, Understanding Enzymes Function, Design, Engineering and Analysis, Allan Svendsen (ed)., Singapore, Pan Stanford Publishing Pte. Ltd
-
Cockburn, D., and Svensson, B. (2016) Structure and functional roles of surface binding sites in amylolytic enzymes. In Understanding Enzymes: Function, Design, Engineering and Analysis. Allan Svendsen (ed). Singapore: Pan Stanford Publishing Pte. Ltd, pp. 267–295.
-
(2016)
Structure and functional roles of surface binding sites in amylolytic enzymes
, pp. 267-295
-
-
Cockburn, D.1
Svensson, B.2
-
15
-
-
84923013262
-
Surface binding sites in amylase have distinct roles in recognition of starch structure motifs and degradation
-
Cockburn, D., Nielsen, M.M., Christiansen, C., Andersen, J.M., Rannes, J.B., Blennow, A., and Svensson, B. (2015a) Surface binding sites in amylase have distinct roles in recognition of starch structure motifs and degradation. Int J Biol Macromol 75: 338–345.
-
(2015)
Int J Biol Macromol
, vol.75
, pp. 338-345
-
-
Cockburn, D.1
Nielsen, M.M.2
Christiansen, C.3
Andersen, J.M.4
Rannes, J.B.5
Blennow, A.6
Svensson, B.7
-
16
-
-
84920703276
-
Molecular details of a starch utilization pathway in the human gut symbiont Eubacterium rectale
-
Cockburn, D.W., Orlovsky, N.I., Foley, M.H., Kwiatkowski, K.J., Bahr, C.M., Maynard, M., et al. (2015b) Molecular details of a starch utilization pathway in the human gut symbiont Eubacterium rectale. Mol Microbiol 95: 209–230.
-
(2015)
Mol Microbiol
, vol.95
, pp. 209-230
-
-
Cockburn, D.W.1
Orlovsky, N.I.2
Foley, M.H.3
Kwiatkowski, K.J.4
Bahr, C.M.5
Maynard, M.6
-
17
-
-
85018597304
-
Affinity electrophoresis for analysis of catalytic module-carbohydrate interactions
-
Cockburn, D., Wilkens, C., and Svensson, B. (2017) Affinity electrophoresis for analysis of catalytic module-carbohydrate interactions. Methods Mol Biol 1588: 119–127.
-
(2017)
Methods Mol Biol
, vol.1588
, pp. 119-127
-
-
Cockburn, D.1
Wilkens, C.2
Svensson, B.3
-
18
-
-
0035672376
-
13)C nuclear magnetic relaxation study of segmental dynamics of the heteropolysaccharide pullulan in dilute solutions
-
Dais, P., Vlachou, S., and Taravel, F.R. (2001) (13)C nuclear magnetic relaxation study of segmental dynamics of the heteropolysaccharide pullulan in dilute solutions. Biomacromolecules 2: 1137–1147.
-
(2001)
Biomacromolecules
, vol.2
, pp. 1137-1147
-
-
Dais, P.1
Vlachou, S.2
Taravel, F.R.3
-
19
-
-
77951222409
-
First principles insight into the α-glucan structures of starch: their synthesis, conformation, and hydration
-
Damager, I., Engelsen, S.B., Blennow, A., Møller, B.L., and Motawia, M.S. (2010) First principles insight into the α-glucan structures of starch: their synthesis, conformation, and hydration. Chem Rev 110: 2049–2080.
-
(2010)
Chem Rev
, vol.110
, pp. 2049-2080
-
-
Damager, I.1
Engelsen, S.B.2
Blennow, A.3
Møller, B.L.4
Motawia, M.S.5
-
20
-
-
84921481734
-
Association between specific mucosa-associated microbiota in Crohn's disease at the time of resection and subsequent disease recurrence: a pilot study
-
De Cruz, P., Kang, S., Wagner, J., Buckley, M., Sim, W.H., Prideaux, L., et al. (2015) Association between specific mucosa-associated microbiota in Crohn's disease at the time of resection and subsequent disease recurrence: a pilot study. J Gastroenterol Hepatol 30: 268–278.
-
(2015)
J Gastroenterol Hepatol
, vol.30
, pp. 268-278
-
-
De Cruz, P.1
Kang, S.2
Wagner, J.3
Buckley, M.4
Sim, W.H.5
Prideaux, L.6
-
21
-
-
84995739780
-
A dietary fiber-deprived gut microbiota degrades the colonic mucus barrier and enhances pathogen susceptibility
-
Desai, M.S., Seekatz, A.M., Koropatkin, N.M., Kamada, N., Hickey, C.A., Wolter, M., et al. (2016) A dietary fiber-deprived gut microbiota degrades the colonic mucus barrier and enhances pathogen susceptibility. Cell 167: 1339–1353.e1321.
-
(2016)
Cell
, vol.167
, pp. 1339-1353.e1321
-
-
Desai, M.S.1
Seekatz, A.M.2
Koropatkin, N.M.3
Kamada, N.4
Hickey, C.A.5
Wolter, M.6
-
22
-
-
84979854249
-
JPred4: a protein secondary structure prediction server
-
Drozdetskiy, A., Cole, C., Procter, J., and Barton, G.J. (2015) JPred4: a protein secondary structure prediction server. Nucleic Acids Res 43: W389–W394.
-
(2015)
Nucleic Acids Res
, vol.43
, pp. W389-W394
-
-
Drozdetskiy, A.1
Cole, C.2
Procter, J.3
Barton, G.J.4
-
24
-
-
84965032385
-
The Sus operon: a model system for starch uptake by the human gut Bacteroidetes
-
Foley, M.H., Cockburn, D.W., and Koropatkin, N.M. (2016) The Sus operon: a model system for starch uptake by the human gut Bacteroidetes. Cell Mol Life Sci 73: 2603–2617.
-
(2016)
Cell Mol Life Sci
, vol.73
, pp. 2603-2617
-
-
Foley, M.H.1
Cockburn, D.W.2
Koropatkin, N.M.3
-
25
-
-
84949772416
-
Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota
-
Forslund, K., Hildebrand, F., Nielsen, T., Falony, G., Le Chatelier, E., Sunagawa, S., et al. (2015) Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota. Nature 528: 262–266.
-
(2015)
Nature
, vol.528
, pp. 262-266
-
-
Forslund, K.1
Hildebrand, F.2
Nielsen, T.3
Falony, G.4
Le Chatelier, E.5
Sunagawa, S.6
-
26
-
-
84871883810
-
A review of the potential mechanisms for the lowering of colorectal oncogenesis by butyrate
-
Fung, K.Y.C., Cosgrove, L., Lockett, T., Head, R., and Topping, D.L. (2012) A review of the potential mechanisms for the lowering of colorectal oncogenesis by butyrate. Br J Nutr 108: 820–831.
-
(2012)
Br J Nutr
, vol.108
, pp. 820-831
-
-
Fung, K.Y.C.1
Cosgrove, L.2
Lockett, T.3
Head, R.4
Topping, D.L.5
-
27
-
-
0026466802
-
Physical characteristics of starch granules and susceptibility to enzymatic degradation
-
Bouchet
-
Gallant, D.J., Bouchet, Buleon, B.A., and Perez, S. (1992) Physical characteristics of starch granules and susceptibility to enzymatic degradation. Eur J Clin Nutr 46: S3–S16.
-
(1992)
Eur J Clin Nutr
, vol.46
, pp. S3-S16
-
-
Gallant, D.J.1
Buleon, B.A.2
Perez, S.3
-
28
-
-
0025844982
-
Thermodynamics of hydrolysis of oligosaccharides
-
Goldberg, R.N., Bell, D., Tewari, Y.B., and McLaughlin, M.A. (1991) Thermodynamics of hydrolysis of oligosaccharides. Biophys Chem 40: 69–76.
-
(1991)
Biophys Chem
, vol.40
, pp. 69-76
-
-
Goldberg, R.N.1
Bell, D.2
Tewari, Y.B.3
McLaughlin, M.A.4
-
29
-
-
0016053069
-
Predominant Gram-positive bacteria in human feces: numbers, variety, and persistence
-
Gossling, J., and Slack, J.M. (1974) Predominant Gram-positive bacteria in human feces: numbers, variety, and persistence. Infect Immun 9: 719–729.
-
(1974)
Infect Immun
, vol.9
, pp. 719-729
-
-
Gossling, J.1
Slack, J.M.2
-
30
-
-
78650579361
-
From the gut to the peripheral tissues: the multiple effects of butyrate
-
Guilloteau, P., Martin, L., Eeckhaut, V., Ducatelle, R., Zabielski, R., and Van Immerseel, F. (2010) From the gut to the peripheral tissues: the multiple effects of butyrate. Nutr Res Rev 23: 366–384.
-
(2010)
Nutr Res Rev
, vol.23
, pp. 366-384
-
-
Guilloteau, P.1
Martin, L.2
Eeckhaut, V.3
Ducatelle, R.4
Zabielski, R.5
Van Immerseel, F.6
-
31
-
-
84952862829
-
The gut microbial community in metabolic syndrome patients is modified by diet
-
Haro, C., Garcia-Carpintero, S., Alcala-Diaz, J.F., Gomez-Delgado, F., Delgado-Lista, J., Perez-Martinez, P., et al. (2016) The gut microbial community in metabolic syndrome patients is modified by diet. J Nutr Biochem 27: 27–31.
-
(2016)
J Nutr Biochem
, vol.27
, pp. 27-31
-
-
Haro, C.1
Garcia-Carpintero, S.2
Alcala-Diaz, J.F.3
Gomez-Delgado, F.4
Delgado-Lista, J.5
Perez-Martinez, P.6
-
32
-
-
77956988940
-
Carbohydrate-binding modules promote the enzymatic deconstruction of intact plant cell walls by targeting and proximity effects
-
Hervé, C., Rogowski, A., Blake, A.W., Marcus, S.E., Gilbert, H.J., and Knox, J.P. (2010) Carbohydrate-binding modules promote the enzymatic deconstruction of intact plant cell walls by targeting and proximity effects. Proc Natl Acad Sci USA 107: 15293–15298.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 15293-15298
-
-
Hervé, C.1
Rogowski, A.2
Blake, A.W.3
Marcus, S.E.4
Gilbert, H.J.5
Knox, J.P.6
-
33
-
-
84989102139
-
Recent advances in knowledge of starch structure
-
Imberty, A., Buléon, A., Tran, V., and Péerez, S. (1991) Recent advances in knowledge of starch structure. Starch-Stärke 43: 375–384.
-
(1991)
Starch-Stärke
, vol.43
, pp. 375-384
-
-
Imberty, A.1
Buléon, A.2
Tran, V.3
Péerez, S.4
-
34
-
-
85025065101
-
The starch-binding domain family CBM41-An in silico analysis of evolutionary relationships
-
Janecek, S., Majzlova, K., Svensson, B., and MacGregor, E.A. (2017) The starch-binding domain family CBM41-An in silico analysis of evolutionary relationships. Proteins 85: 1480–1492.
-
(2017)
Proteins
, vol.85
, pp. 1480-1492
-
-
Janecek, S.1
Majzlova, K.2
Svensson, B.3
MacGregor, E.A.4
-
35
-
-
33644530353
-
The activity of barley α-amylase on starch granules is enhanced by fusion of a starch binding domain from Aspergillus niger glucoamylase
-
Juge, N., Nøhr, J., Le Gal-Coëffet, M.-F., Kramhøft, B., Furniss, C.S.M., Planchot, V., et al. (2006) The activity of barley α-amylase on starch granules is enhanced by fusion of a starch binding domain from Aspergillus niger glucoamylase. Biochim Biophys Acta 1764: 275–284.
-
(2006)
Biochim Biophys Acta
, vol.1764
, pp. 275-284
-
-
Juge, N.1
Nøhr, J.2
Le Gal-Coëffet, M.-F.3
Kramhøft, B.4
Furniss, C.S.M.5
Planchot, V.6
-
36
-
-
78649622569
-
Dysbiosis of fecal microbiota in Crohn's disease patients as revealed by a custom phylogenetic microarray
-
Kang, S., Denman, S.E., Morrison, M., Yu, Z., Dore, J., Leclerc, M., and McSweeney, C.S. (2010) Dysbiosis of fecal microbiota in Crohn's disease patients as revealed by a custom phylogenetic microarray. Inflamm Bowel Dis 16: 2034–2042.
-
(2010)
Inflamm Bowel Dis
, vol.16
, pp. 2034-2042
-
-
Kang, S.1
Denman, S.E.2
Morrison, M.3
Yu, Z.4
Dore, J.5
Leclerc, M.6
McSweeney, C.S.7
-
37
-
-
46049115447
-
Starch catabolism by a prominent human gut symbiont is directed by the recognition of amylose helices
-
Koropatkin, N.M., Martens, E.C., Gordon, J.I., and Smith, T.J. (2008) Starch catabolism by a prominent human gut symbiont is directed by the recognition of amylose helices. Structure 16: 1105–1115.
-
(2008)
Structure
, vol.16
, pp. 1105-1115
-
-
Koropatkin, N.M.1
Martens, E.C.2
Gordon, J.I.3
Smith, T.J.4
-
38
-
-
33845683489
-
The structural basis of α-glucan recognition by a family 41 carbohydrate-binding module from Thermotoga maritima
-
Lammerts van Bueren, A., and Boraston, A.B. (2007) The structural basis of α-glucan recognition by a family 41 carbohydrate-binding module from Thermotoga maritima. J Mol Biol 365: 555–560.
-
(2007)
J Mol Biol
, vol.365
, pp. 555-560
-
-
Lammerts van Bueren, A.1
Boraston, A.B.2
-
39
-
-
10644283902
-
Alpha-glucan recognition by a new family of carbohydrate-binding modules found primarily in bacterial pathogens
-
Lammerts van Bueren, A., Finn, R., Ausió, J., and Boraston, A.B. (2004a) Alpha-glucan recognition by a new family of carbohydrate-binding modules found primarily in bacterial pathogens. Biochemistry 43: 15633–15642.
-
(2004)
Biochemistry
, vol.43
, pp. 15633-15642
-
-
Lammerts van Bueren, A.1
Finn, R.2
Ausió, J.3
Boraston, A.B.4
-
40
-
-
10644283902
-
α-Glucan recognition by a new family of carbohydrate-binding modules found primarily in bacterial pathogens
-
Lammerts Van Bueren, A., Finn, R., Ausió, J., and Boraston, A.B. (2004b) α-Glucan recognition by a new family of carbohydrate-binding modules found primarily in bacterial pathogens. Biochemistry 43: 15633–15642.
-
(2004)
Biochemistry
, vol.43
, pp. 15633-15642
-
-
Lammerts Van Bueren, A.1
Finn, R.2
Ausió, J.3
Boraston, A.B.4
-
41
-
-
33846956795
-
Selective colonization of insoluble substrates by human faecal bacteria
-
Leitch, E.C.M., Walker, A.W., Duncan, S.H., Holtrop, G., and Flint, H.J. (2007) Selective colonization of insoluble substrates by human faecal bacteria. Environ Microbiol 9: 667–679.
-
(2007)
Environ Microbiol
, vol.9
, pp. 667-679
-
-
Leitch, E.C.M.1
Walker, A.W.2
Duncan, S.H.3
Holtrop, G.4
Flint, H.J.5
-
42
-
-
84891763855
-
The carbohydrate-active enzymes database (CAZy) in 2013
-
Lombard, V., Golaconda Ramulu, H., Drula, E., Coutinho, P.M., and Henrissat, B. (2014) The carbohydrate-active enzymes database (CAZy) in 2013. Nucleic Acids Res 42: D490–D495.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D490-D495
-
-
Lombard, V.1
Golaconda Ramulu, H.2
Drula, E.3
Coutinho, P.M.4
Henrissat, B.5
-
43
-
-
78649734540
-
Resistant starches types 2 and 4 have differential effects on the composition of the fecal microbiota in human subjects
-
Martínez, I., Kim, J., Duffy, P.R., Schlegel, V.L., Walter, J., and Heimesaat, M.M. (2010) Resistant starches types 2 and 4 have differential effects on the composition of the fecal microbiota in human subjects. PLoS One 5: e15046.
-
(2010)
PLoS One
, vol.5
-
-
Martínez, I.1
Kim, J.2
Duffy, P.R.3
Schlegel, V.L.4
Walter, J.5
Heimesaat, M.M.6
-
44
-
-
84872969494
-
Gut microbiome composition is linked to whole grain-induced immunological improvements
-
Martínez, I., Lattimer, J.M., Hubach, K.L., Case, J.A., Yang, J., Weber, C.G., et al. (2013) Gut microbiome composition is linked to whole grain-induced immunological improvements. ISME J 7: 269–280.
-
(2013)
ISME J
, vol.7
, pp. 269-280
-
-
Martínez, I.1
Lattimer, J.M.2
Hubach, K.L.3
Case, J.A.4
Yang, J.5
Weber, C.G.6
-
45
-
-
0036559805
-
Measurement of resistant starch
-
McCleary, B.V., and Monaghan, D.A. (2002) Measurement of resistant starch. J AOAC Int 85: 665–675.
-
(2002)
J AOAC Int
, vol.85
, pp. 665-675
-
-
McCleary, B.V.1
Monaghan, D.A.2
-
46
-
-
34447508216
-
Phaser crystallographic software
-
McCoy, A.J., Grosse-Kunstleve, R.W., Adams, P.D., Winn, M.D., Storoni, L.C., and Read, R.J. (2007) Phaser crystallographic software. J Appl Crystallogr 40: 658–674.
-
(2007)
J Appl Crystallogr
, vol.40
, pp. 658-674
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Adams, P.D.3
Winn, M.D.4
Storoni, L.C.5
Read, R.J.6
-
47
-
-
0021349077
-
The contribution of the large intestine to energy supplies in man
-
McNeil, N.I. (1984) The contribution of the large intestine to energy supplies in man. Am J Clin Nutr 39: 338–342.
-
(1984)
Am J Clin Nutr
, vol.39
, pp. 338-342
-
-
McNeil, N.I.1
-
48
-
-
84965052610
-
Structure and function of α-glucan debranching enzymes
-
Møller, M.S., Henriksen, A., and Svensson, B. (2016) Structure and function of α-glucan debranching enzymes. Cell Mol Life Sci 73: 2619–2641.
-
(2016)
Cell Mol Life Sci
, vol.73
, pp. 2619-2641
-
-
Møller, M.S.1
Henriksen, A.2
Svensson, B.3
-
49
-
-
14044250019
-
Comparative study of small linear and branched alpha-glucans using size exclusion chromatography and static and dynamic light scattering
-
Motawia, M.S., Damager, I., Olsen, C.E., Møller, B.L., Engelsen, S.B., Hansen, S., et al. (2005) Comparative study of small linear and branched alpha-glucans using size exclusion chromatography and static and dynamic light scattering. Biomacromolecules 6: 143–151.
-
(2005)
Biomacromolecules
, vol.6
, pp. 143-151
-
-
Motawia, M.S.1
Damager, I.2
Olsen, C.E.3
Møller, B.L.4
Engelsen, S.B.5
Hansen, S.6
-
50
-
-
84946762832
-
The effect of short-chain fatty acids on human monocyte-derived dendritic cells
-
Nastasi, C., Candela, M., Bonefeld, C.M., Geisler, C., Hansen, M., Krejsgaard, T., et al. (2015) The effect of short-chain fatty acids on human monocyte-derived dendritic cells. Sci Rep 5: 16148.
-
(2015)
Sci Rep
, vol.5
, pp. 16148
-
-
Nastasi, C.1
Candela, M.2
Bonefeld, C.M.3
Geisler, C.4
Hansen, M.5
Krejsgaard, T.6
-
51
-
-
84866003063
-
Degradation of the starch components amylopectin and amylose by barley α-amylase 1: role of surface binding site 2
-
Nielsen, J.W., Kramhøft, B., Bozonnet, S., Abou Hachem, M., Stipp, S.L.S., Svensson, B., et al. (2012) Degradation of the starch components amylopectin and amylose by barley α-amylase 1: role of surface binding site 2. Arch Biochem Biophys 528: 1–6.
-
(2012)
Arch Biochem Biophys
, vol.528
, pp. 1-6
-
-
Nielsen, J.W.1
Kramhøft, B.2
Bozonnet, S.3
Abou Hachem, M.4
Stipp, S.L.S.5
Svensson, B.6
-
52
-
-
68849101644
-
Two secondary carbohydrate binding sites on the surface of barley α-amylase 1 have distinct functions and display synergy in hydrolysis of starch granules
-
Nielsen, M.M., Bozonnet, S., Seo, E.-S., Mótyán, J.A., Andersen, J.M., Dilokpimol, A., et al. (2009) Two secondary carbohydrate binding sites on the surface of barley α-amylase 1 have distinct functions and display synergy in hydrolysis of starch granules. Biochemistry 48: 7686–7697.
-
(2009)
Biochemistry
, vol.48
, pp. 7686-7697
-
-
Nielsen, M.M.1
Bozonnet, S.2
Seo, E.-S.3
Mótyán, J.A.4
Andersen, J.M.5
Dilokpimol, A.6
-
53
-
-
0038605708
-
Glucoamylase starch-binding domain of Aspergillus niger B1: molecular cloning and functional characterization
-
Paldi, T., Levy, I., and Shoseyov, O. (2003) Glucoamylase starch-binding domain of Aspergillus niger B1: molecular cloning and functional characterization. Biochem J 372: 905–910.
-
(2003)
Biochem J
, vol.372
, pp. 905-910
-
-
Paldi, T.1
Levy, I.2
Shoseyov, O.3
-
54
-
-
84875520959
-
Pullulan: an exopolysaccharide and its various applications
-
Prajapati, V.D., Jani, G.K., and Khanda, S.M. (2013) Pullulan: an exopolysaccharide and its various applications. Carbohydr Polym 95: 540–549.
-
(2013)
Carbohydr Polym
, vol.95
, pp. 540-549
-
-
Prajapati, V.D.1
Jani, G.K.2
Khanda, S.M.3
-
55
-
-
84867074831
-
A metagenome-wide association study of gut microbiota in type 2 diabetes
-
Qin, J., Li, Y., Cai, Z., Li, S., Zhu, J., Zhang, F., et al. (2012) A metagenome-wide association study of gut microbiota in type 2 diabetes. Nature 490: 55–60.
-
(2012)
Nature
, vol.490
, pp. 55-60
-
-
Qin, J.1
Li, Y.2
Cai, Z.3
Li, S.4
Zhu, J.5
Zhang, F.6
-
56
-
-
84876375062
-
Phylogenetic analysis of dysbiosis in ulcerative colitis during remission
-
Rajilic-Stojanovic, M., Shanahan, F., Guarner, F., and de Vos, W.M. (2013) Phylogenetic analysis of dysbiosis in ulcerative colitis during remission. Inflamm Bowel Dis 19: 481–488.
-
(2013)
Inflamm Bowel Dis
, vol.19
, pp. 481-488
-
-
Rajilic-Stojanovic, M.1
Shanahan, F.2
Guarner, F.3
de Vos, W.M.4
-
57
-
-
33750939775
-
Cell-associated α-amylases of butyrate-producing Firmicute bacteria from the human colon
-
Ramsay, A.G., Scott, K.P., Martin, J.C., Rincon, M.T., and Flint, H.J. (2006) Cell-associated α-amylases of butyrate-producing Firmicute bacteria from the human colon. Microbiology 152: 3281–3290.
-
(2006)
Microbiology
, vol.152
, pp. 3281-3290
-
-
Ramsay, A.G.1
Scott, K.P.2
Martin, J.C.3
Rincon, M.T.4
Flint, H.J.5
-
58
-
-
84883478660
-
Gut microbiota from twins discordant for obesity modulate metabolism in mice
-
Ridaura, V.K., Faith, J.J., Rey, F.E., Cheng, J., Duncan, A.E., Kau, A.L., et al. (2013) Gut microbiota from twins discordant for obesity modulate metabolism in mice. Science 341: 1079–1090.
-
(2013)
Science
, vol.341
, pp. 1079-1090
-
-
Ridaura, V.K.1
Faith, J.J.2
Rey, F.E.3
Cheng, J.4
Duncan, A.E.5
Kau, A.L.6
-
59
-
-
84962195820
-
Intestinal short chain fatty acids and their link with diet and human health
-
Ruas-Madiedo
-
Rios-Covian, D., Ruas-Madiedo, Margolles, P., Gueimonde, A.M., de Los Reyes-Gavilan, C.G., and Salazar, N. (2016) Intestinal short chain fatty acids and their link with diet and human health. Front Microbiol 7: 185.
-
(2016)
Front Microbiol
, vol.7
, pp. 185
-
-
Rios-Covian, D.1
Margolles, P.2
Gueimonde, A.M.3
de Los Reyes-Gavilan, C.G.4
Salazar, N.5
-
60
-
-
0019128183
-
Role of anaerobic bacteria in the metabolic welfare of the colonic mucosa in man
-
Roediger, W.E. (1980) Role of anaerobic bacteria in the metabolic welfare of the colonic mucosa in man. Gut 21: 793–798.
-
(1980)
Gut
, vol.21
, pp. 793-798
-
-
Roediger, W.E.1
-
61
-
-
85026662104
-
Feeding the microbiota: transducer of nutrient signals for the host
-
Shanahan, F., van Sinderen, D., O'toole, P.W., and Stanton, C. (2017) Feeding the microbiota: transducer of nutrient signals for the host. Gut 66: 1709–1717.
-
(2017)
Gut
, vol.66
, pp. 1709-1717
-
-
Shanahan, F.1
van Sinderen, D.2
O'toole, P.W.3
Stanton, C.4
-
62
-
-
0001615281
-
Characterization of two forms of glucoamylase from Aspergillus niger
-
Svensson, B., Svendsen, T.G., Svendsen, I., Sakai, T., and Ottesen, M. (1982) Characterization of two forms of glucoamylase from Aspergillus niger. Carlsberg Res Comm 47: 55.
-
(1982)
Carlsberg Res Comm
, vol.47
, pp. 55
-
-
Svensson, B.1
Svendsen, T.G.2
Svendsen, I.3
Sakai, T.4
Ottesen, M.5
-
63
-
-
70349233883
-
Towards the human intestinal microbiota phylogenetic core
-
Tap, J., Mondot, S., Levenez, F., Pelletier, E., Caron, C., Furet, J.P., et al. (2009) Towards the human intestinal microbiota phylogenetic core. Environ Microbiol 11: 2574–2584.
-
(2009)
Environ Microbiol
, vol.11
, pp. 2574-2584
-
-
Tap, J.1
Mondot, S.2
Levenez, F.3
Pelletier, E.4
Caron, C.5
Furet, J.P.6
-
64
-
-
84940783566
-
Degradation of granular starch by the bacterium Microbacterium aurum Strain B8.A involves a modular α-amylase enzyme system with FNIII and CBM25 domains
-
Valk, V., Eeuwema, W., Sarian, F.D., van der Kaaij, R.M., Dijkhuizen, L., and Parales, R.E. (2015) Degradation of granular starch by the bacterium Microbacterium aurum Strain B8.A involves a modular α-amylase enzyme system with FNIII and CBM25 domains. Appl Environ Microbiol 81: 6610–6620.
-
(2015)
Appl Environ Microbiol
, vol.81
, pp. 6610-6620
-
-
Valk, V.1
Eeuwema, W.2
Sarian, F.D.3
van der Kaaij, R.M.4
Dijkhuizen, L.5
Parales, R.E.6
-
65
-
-
84976507304
-
Carbohydrate-binding module 74 is a novel starch-binding domain associated with large and multidomain α-amylase enzymes
-
Valk, V., Lammerts van Bueren, A., van der Kaaij, R.M., and Dijkhuizen, L. (2016) Carbohydrate-binding module 74 is a novel starch-binding domain associated with large and multidomain α-amylase enzymes. FEBS J 283: 2354–2368.
-
(2016)
FEBS J
, vol.283
, pp. 2354-2368
-
-
Valk, V.1
Lammerts van Bueren, A.2
van der Kaaij, R.M.3
Dijkhuizen, L.4
-
66
-
-
0027439390
-
Atomic structures of the human immunophilin FKBP-12 complexes with FK506 and rapamycin
-
Van Duyne, G.D., Standaert, R.F., Karplus, P.A., Schreiber, S.L., and Clardy, J. (1993) Atomic structures of the human immunophilin FKBP-12 complexes with FK506 and rapamycin. J Mol Biol 229: 105–124.
-
(1993)
J Mol Biol
, vol.229
, pp. 105-124
-
-
Van Duyne, G.D.1
Standaert, R.F.2
Karplus, P.A.3
Schreiber, S.L.4
Clardy, J.5
-
67
-
-
84996483432
-
Variable responses of human microbiomes to dietary supplementation with resistant starch
-
Venkataraman, A., Sieber, J.R., Schmidt, A.W., Waldron, C., Theis, K.R., and Schmidt, T.M. (2016) Variable responses of human microbiomes to dietary supplementation with resistant starch. Microbiome 4: 33.
-
(2016)
Microbiome
, vol.4
, pp. 33
-
-
Venkataraman, A.1
Sieber, J.R.2
Schmidt, A.W.3
Waldron, C.4
Theis, K.R.5
Schmidt, T.M.6
-
68
-
-
79953733151
-
Data processing and analysis with the autoPROC toolbox
-
Vonrhein, C., Flensburg, C., Keller, P., Sharff, A., Smart, O., Paciorek, W., Womack, T., and Bricogne, G. (2011) Data processing and analysis with the autoPROC toolbox. Acta Crystallogr D Biol Crystallogr 67: 293–302.
-
(2011)
Acta Crystallogr D Biol Crystallogr
, vol.67
, pp. 293-302
-
-
Vonrhein, C.1
Flensburg, C.2
Keller, P.3
Sharff, A.4
Smart, O.5
Paciorek, W.6
Womack, T.7
Bricogne, G.8
-
69
-
-
0023406022
-
Assay of reducing sugars in the nanomole range with 2,2′-bicinchoninate
-
Waffenschmidt, S., and Jaenicke, L. (1987) Assay of reducing sugars in the nanomole range with 2,2′-bicinchoninate. Anal Biochem 165: 337–340.
-
(1987)
Anal Biochem
, vol.165
, pp. 337-340
-
-
Waffenschmidt, S.1
Jaenicke, L.2
-
70
-
-
84871629387
-
Butyrate enhances intestinal epithelial barrier function via up-regulation of tight junction protein Claudin-1 transcription
-
Wang, H.B., Wang, P.Y., Wang, X., Wan, Y.L., and Liu, Y.C. (2012) Butyrate enhances intestinal epithelial barrier function via up-regulation of tight junction protein Claudin-1 transcription. Dig Dis Sci 57: 3126–3135.
-
(2012)
Dig Dis Sci
, vol.57
, pp. 3126-3135
-
-
Wang, H.B.1
Wang, P.Y.2
Wang, X.3
Wan, Y.L.4
Liu, Y.C.5
-
71
-
-
79960562619
-
Binding interactions of α-amylase with starch granules: the influence of supramolecular structure and surface area
-
Warren, F.J., Royall, P.G., Gaisford, S., Butterworth, P.J., and Ellis, P.R. (2011) Binding interactions of α-amylase with starch granules: the influence of supramolecular structure and surface area. Carbohydr Polym 86: 1038–1047.
-
(2011)
Carbohydr Polym
, vol.86
, pp. 1038-1047
-
-
Warren, F.J.1
Royall, P.G.2
Gaisford, S.3
Butterworth, P.J.4
Ellis, P.R.5
-
72
-
-
79953737180
-
Overview of the CCP4 suite and current developments
-
Winn, M.D., Ballard, C.C., Cowtan, K.D., Dodson, E.J., Emsley, P., Evans, P.R., et al. (2011) Overview of the CCP4 suite and current developments. Acta Crystallogr D Biol Crystallogr 67: 235–242.
-
(2011)
Acta Crystallogr D Biol Crystallogr
, vol.67
, pp. 235-242
-
-
Winn, M.D.1
Ballard, C.C.2
Cowtan, K.D.3
Dodson, E.J.4
Emsley, P.5
Evans, P.R.6
-
73
-
-
33748209543
-
Colonic health: fermentation and short chain fatty acids
-
Wong, J.M.W., de Souza, R., Kendall, C.W.C., Emam, A., and Jenkins, D.J. (2006) Colonic health: fermentation and short chain fatty acids. J Clin Gastroenterol 40: 235–243.
-
(2006)
J Clin Gastroenterol
, vol.40
, pp. 235-243
-
-
Wong, J.M.W.1
de Souza, R.2
Kendall, C.W.C.3
Emam, A.4
Jenkins, D.J.5
-
74
-
-
84891585929
-
The gut microbiome modulates colon tumorigenesis
-
Zackular, J.P., Baxter, N.T., Iverson, K.D., Sadler, W.D., Petrosino, J.F., Chen, G.Y., and Schloss, P.D. (2013) The gut microbiome modulates colon tumorigenesis. mBio 4: e00692–e00613.
-
(2013)
mBio
, vol.4
, pp. e00613-e00692
-
-
Zackular, J.P.1
Baxter, N.T.2
Iverson, K.D.3
Sadler, W.D.4
Petrosino, J.F.5
Chen, G.Y.6
Schloss, P.D.7
-
75
-
-
84863990011
-
Ruminococcus bromii is a keystone species for the degradation of resistant starch in the human colon
-
Ze, X., Duncan, S.H., Louis, P., and Flint, H.J. (2012) Ruminococcus bromii is a keystone species for the degradation of resistant starch in the human colon. ISME J 6: 1535–1543.
-
(2012)
ISME J
, vol.6
, pp. 1535-1543
-
-
Ze, X.1
Duncan, S.H.2
Louis, P.3
Flint, H.J.4
|