메뉴 건너뛰기




Volumn 19, Issue 1, 2018, Pages 53-62

Viral unmasking of cellular 5S rRNA pseudogene transcripts induces RIG-I-mediated immunity article

Author keywords

[No Author keywords available]

Indexed keywords

5S RIBOSOMAL RNA PSEUDOGENE 141; BETA INTERFERON; INTERFERON; MESSENGER RNA; RANTES; RETINOIC ACID INDUCIBLE PROTEIN I; RNA 5S; TUMOR NECROSIS FACTOR; UNCLASSIFIED DRUG; VIRUS RNA; DDX58 PROTEIN, HUMAN;

EID: 85035083737     PISSN: 15292908     EISSN: 15292916     Source Type: Journal    
DOI: 10.1038/s41590-017-0005-y     Document Type: Article
Times cited : (181)

References (57)
  • 2
    • 77950343791 scopus 로고    scopus 로고
    • Pattern recognition receptors and inflammation
    • Takeuchi, O. and Akira, S. Pattern recognition receptors and inflammation. Cell 140, 805-820 (2010).
    • (2010) Cell , vol.140 , pp. 805-820
    • Takeuchi, O.1    Akira, S.2
  • 3
    • 79956314622 scopus 로고    scopus 로고
    • Immune signaling by RIG-I-like receptors
    • Loo, Y. M. and Gale, M. Jr. Immune signaling by RIG-I-like receptors. Immunity 34, 680-692 (2011).
    • (2011) Immunity , vol.34 , pp. 680-692
    • Loo, Y.M.1    Gale, M.2
  • 4
    • 84896958063 scopus 로고    scopus 로고
    • Innate immune sensing and signaling of cytosolic nucleic acids
    • Wu, J. and Chen, Z. J. Innate immune sensing and signaling of cytosolic nucleic acids. Annu. Rev. Immunol. 32, 461-488 (2014).
    • (2014) Annu. Rev. Immunol. , vol.32 , pp. 461-488
    • Wu, J.1    Chen, Z.J.2
  • 5
    • 33750976374 scopus 로고    scopus 로고
    • 5'-Triphosphate RNA is the ligand for RIG-I
    • Hornung, V. et al. 5'-Triphosphate RNA is the ligand for RIG-I. Science 314, 994-997 (2006).
    • (2006) Science , vol.314 , pp. 994-997
    • Hornung, V.1
  • 6
    • 33750984771 scopus 로고    scopus 로고
    • RIG-I-mediated antiviral responses to single-stranded RNA bearing 5'-phosphates
    • Pichlmair, A. et al. RIG-I-mediated antiviral responses to single-stranded RNA bearing 5'-phosphates. Science 314, 997-1001 (2006).
    • (2006) Science , vol.314 , pp. 997-1001
    • Pichlmair, A.1
  • 7
    • 68049089651 scopus 로고    scopus 로고
    • Recognition of 5'triphosphate by RIG-I helicase requires short blunt double-stranded RNA as contained in panhandle of negativestrand virus
    • Schlee, M. et al. Recognition of 5'triphosphate by RIG-I helicase requires short blunt double-stranded RNA as contained in panhandle of negativestrand virus. Immunity 31, 25-34 (2009).
    • (2009) Immunity , vol.31 , pp. 25-34
    • Schlee, M.1
  • 8
    • 75749140581 scopus 로고    scopus 로고
    • RIG-I detects viral genomic RNA during negative-strand RNA virus infection
    • Rehwinkel, J. et al. RIG-I detects viral genomic RNA during negative-strand RNA virus infection. Cell 140, 397-408 (2010).
    • (2010) Cell , vol.140 , pp. 397-408
    • Rehwinkel, J.1
  • 9
    • 77957997708 scopus 로고    scopus 로고
    • Preference of RIG-I for short viral RNA molecules in infected cells revealed by next-generation sequencing
    • Baum, A., Sachidanandam, R. and García-Sastre, A. Preference of RIG-I for short viral RNA molecules in infected cells revealed by next-generation sequencing. Proc. Natl. Acad. Sci. USA 107, 16303-16308 (2010).
    • (2010) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 16303-16308
    • Baum, A.1    Sachidanandam, R.2    García-Sastre, A.3
  • 10
    • 84901376043 scopus 로고    scopus 로고
    • In vivo ligands of MDA5 and RIG-I in measles virus-infected cells
    • Runge, S. et al. In vivo ligands of MDA5 and RIG-I in measles virus-infected cells. PLoS Pathog. 10, e1004081 (2014).
    • (2014) PLoS Pathog. , vol.10 , pp. e1004081
    • Runge, S.1
  • 11
    • 84908192059 scopus 로고    scopus 로고
    • Antiviral immunity via RIG-I-mediated recognition of RNA bearing 5'-diphosphates
    • Goubau, D. et al. Antiviral immunity via RIG-I-mediated recognition of RNA bearing 5'-diphosphates. Nature 514, 372-375 (2014).
    • (2014) Nature , vol.514 , pp. 372-375
    • Goubau, D.1
  • 12
    • 47949092573 scopus 로고    scopus 로고
    • Innate immunity induced by composition-dependent RIG-I recognition of hepatitis C virus RNA
    • Saito, T., Owen, D. M., Jiang, F., Marcotrigiano, J. and Gale, M. Jr. Innate immunity induced by composition-dependent RIG-I recognition of hepatitis C virus RNA. Nature 454, 523-527 (2008).
    • (2008) Nature , vol.454 , pp. 523-527
    • Saito, T.1    Owen, D.M.2    Jiang, F.3    Marcotrigiano, J.4    Gale, M.5
  • 13
    • 70349459734 scopus 로고    scopus 로고
    • RIG-I-dependent sensing of poly(dA:dT) through the induction of an RNA polymerase III-transcribed RNA intermediate
    • Ablasser, A. et al. RIG-I-dependent sensing of poly(dA:dT) through the induction of an RNA polymerase III-transcribed RNA intermediate. Nat. Immunol. 10, 1065-1072 (2009).
    • (2009) Nat. Immunol. , vol.10 , pp. 1065-1072
    • Ablasser, A.1
  • 14
    • 68049092912 scopus 로고    scopus 로고
    • RNA polymerase III detects cytosolic DNA and induces type i interferons through the RIG-I pathway
    • Chiu, Y. H., Macmillan, J. B. and Chen, Z. J. RNA polymerase III detects cytosolic DNA and induces type I interferons through the RIG-I pathway. Cell 138, 576-591 (2009).
    • (2009) Cell , vol.138 , pp. 576-591
    • Chiu, Y.H.1    Macmillan, J.B.2    Chen, Z.J.3
  • 15
    • 84967215091 scopus 로고    scopus 로고
    • Viral evasion of intracellular DNA and RNA sensing
    • Chan, Y. K. and Gack, M. U. Viral evasion of intracellular DNA and RNA sensing. Nat. Rev. Microbiol. 14, 360-373 (2016).
    • (2016) Nat. Rev. Microbiol. , vol.14 , pp. 360-373
    • Chan, Y.K.1    Gack, M.U.2
  • 16
    • 84873711885 scopus 로고    scopus 로고
    • Cyclic GMP-AMP synthase is a cytosolic DNA sensor that activates the type i interferon pathway
    • Sun, L., Wu, J., Du, F., Chen, X. and Chen, Z. J. Cyclic GMP-AMP synthase is a cytosolic DNA sensor that activates the type I interferon pathway. Science 339, 786-791 (2013).
    • (2013) Science , vol.339 , pp. 786-791
    • Sun, L.1    Wu, J.2    Du, F.3    Chen, X.4    Chen, Z.J.5
  • 17
    • 77958140656 scopus 로고    scopus 로고
    • IFI16 is an innate immune sensor for intracellular DNA
    • Unterholzner, L. et al. IFI16 is an innate immune sensor for intracellular DNA. Nat. Immunol. 11, 997-1004 (2010).
    • (2010) Nat. Immunol. , vol.11 , pp. 997-1004
    • Unterholzner, L.1
  • 18
    • 58149086118 scopus 로고    scopus 로고
    • Herpes simplex virus type 1 Us3 gene deletion influences toll-like receptor responses in cultured monocytic cells
    • Peri, P. et al. Herpes simplex virus type 1 Us3 gene deletion influences toll-like receptor responses in cultured monocytic cells. Virol. J. 5, 140 (2008).
    • (2008) Virol. J. , vol.5 , pp. 140
    • Peri, P.1
  • 20
    • 38649089789 scopus 로고    scopus 로고
    • The C-terminal regulatory domain is the RNA 5'-triphosphate sensor of RIG-I
    • Cui, S. et al. The C-terminal regulatory domain is the RNA 5'-triphosphate sensor of RIG-I. Mol. Cell 29, 169-179 (2008).
    • (2008) Mol. Cell , vol.29 , pp. 169-179
    • Cui, S.1
  • 21
    • 34447499052 scopus 로고    scopus 로고
    • Triggering the innate antiviral response through IRF-3 activation
    • Hiscott, J. Triggering the innate antiviral response through IRF-3 activation. J. Biol. Chem. 282, 15325-15329 (2007).
    • (2007) J. Biol. Chem. , vol.282 , pp. 15325-15329
    • Hiscott, J.1
  • 22
    • 80255141860 scopus 로고    scopus 로고
    • The RIG-I ATPase domain structure reveals insights into ATP-dependent antiviral signalling
    • Civril, F. et al. The RIG-I ATPase domain structure reveals insights into ATP-dependent antiviral signalling. EMBO Rep. 12, 1127-1134 (2011).
    • (2011) EMBO Rep. , vol.12 , pp. 1127-1134
    • Civril, F.1
  • 23
    • 33746283696 scopus 로고    scopus 로고
    • Messenger RNA turnover and its regulation in herpesviral infection
    • Glaunsinger, B. A. and Ganem, D. E. Messenger RNA turnover and its regulation in herpesviral infection. Adv. Virus Res. 66, 337-394 (2006).
    • (2006) Adv. Virus Res. , vol.66 , pp. 337-394
    • Glaunsinger, B.A.1    Ganem, D.E.2
  • 25
    • 79954599465 scopus 로고    scopus 로고
    • Herpesviruses remodel host membranes for virus egress
    • Johnson, D. C. and Baines, J. D. Herpesviruses remodel host membranes for virus egress. Nat. Rev. Microbiol. 9, 382-394 (2011).
    • (2011) Nat. Rev. Microbiol. , vol.9 , pp. 382-394
    • Johnson, D.C.1    Baines, J.D.2
  • 26
    • 84921650701 scopus 로고    scopus 로고
    • The long noncoding RNAs NEAT1 and MALAT1 bind active chromatin sites
    • West, J. A. et al. The long noncoding RNAs NEAT1 and MALAT1 bind active chromatin sites. Mol. Cell 55, 791-802 (2014).
    • (2014) Mol. Cell , vol.55 , pp. 791-802
    • West, J.A.1
  • 27
    • 84882924224 scopus 로고    scopus 로고
    • Targeting nucleic acids into mitochondria: Progress and prospects
    • Niazi, A. K. et al. Targeting nucleic acids into mitochondria: progress and prospects. Mitochondrion 13, 548-558 (2013).
    • (2013) Mitochondrion , vol.13 , pp. 548-558
    • Niazi, A.K.1
  • 28
    • 2642604294 scopus 로고
    • Herpes simplex virus-infected cells contain a function(s) that destabilizes both host and viral mRNAs
    • Kwong, A. D. and Frenkel, N. Herpes simplex virus-infected cells contain a function(s) that destabilizes both host and viral mRNAs. Proc. Natl. Acad. Sci. USA 84, 1926-1930 (1987).
    • (1987) Proc. Natl. Acad. Sci. USA , vol.84 , pp. 1926-1930
    • Kwong, A.D.1    Frenkel, N.2
  • 29
    • 0031036634 scopus 로고    scopus 로고
    • Persistence of ribosomal protein synthesis after infection of HeLa cells by herpes simplex virus type 1
    • Simonin, D., Diaz, J. J., Massé, T. and Madjar, J. J. Persistence of ribosomal protein synthesis after infection of HeLa cells by herpes simplex virus type 1. J. Gen. Virol. 78, 435-443 (1997)
    • (1997) J. Gen. Virol. , vol.78 , pp. 435-443
    • Simonin, D.1    Diaz, J.J.2    Massé, T.3    Madjar, J.J.4
  • 30
    • 0346373732 scopus 로고    scopus 로고
    • Herpes simplex virus virion host shutoff protein: Immune evasion mediated by a viral RNase?
    • Smiley, J. R. Herpes simplex virus virion host shutoff protein: immune evasion mediated by a viral RNase? J. Virol. 78, 1063-1068 (2004).
    • (2004) J. Virol. , vol.78 , pp. 1063-1068
    • Smiley, J.R.1
  • 31
    • 33745839246 scopus 로고    scopus 로고
    • Sendai virus defective-interfering genomes and the activation of interferon-beta
    • Strahle, L., Garcin, D. and Kolakofsky, D. Sendai virus defective-interfering genomes and the activation of interferon-beta. Virology 351, 101-111 (2006).
    • (2006) Virology , vol.351 , pp. 101-111
    • Strahle, L.1    Garcin, D.2    Kolakofsky, D.3
  • 32
    • 65549164536 scopus 로고    scopus 로고
    • Influenza A virus NS1 targets the ubiquitin ligase TRIM25 to evade recognition by the host viral RNA sensor RIG-I
    • Gack, M. U. et al. Influenza A virus NS1 targets the ubiquitin ligase TRIM25 to evade recognition by the host viral RNA sensor RIG-I. Cell Host Microbe 5, 439-449 (2009).
    • (2009) Cell Host Microbe , vol.5 , pp. 439-449
    • Gack, M.U.1
  • 34
    • 34547960175 scopus 로고    scopus 로고
    • Small self-RNA generated by RNase L amplifies antiviral innate immunity
    • Malathi, K., Dong, B., Gale, M. Jr. and Silverman, R. H. Small self-RNA generated by RNase L amplifies antiviral innate immunity. Nature 448, 816-819 (2007).
    • (2007) Nature , vol.448 , pp. 816-819
    • Malathi, K.1    Dong, B.2    Gale, M.3    Silverman, R.H.4
  • 35
    • 85023641492 scopus 로고    scopus 로고
    • Exosome RNA unshielding couples stromal activation to pattern recognition receptor signaling in cancer
    • Nabet, B. Y. et al. Exosome RNA unshielding couples stromal activation to pattern recognition receptor signaling in cancer. Cell 170, 352-366 (2017).
    • (2017) Cell , vol.170 , pp. 352-366
    • Nabet, B.Y.1
  • 36
    • 84980385738 scopus 로고    scopus 로고
    • Discriminating self from non-self in nucleic acid sensing
    • Schlee, M. and Hartmann, G. Discriminating self from non-self in nucleic acid sensing. Nat. Rev. Immunol. 16, 566-580 (2016).
    • (2016) Nat. Rev. Immunol. , vol.16 , pp. 566-580
    • Schlee, M.1    Hartmann, G.2
  • 37
    • 84954501960 scopus 로고    scopus 로고
    • Importance of nucleic acid recognition in inflammation and autoimmunity
    • Barrat, F. J., Elkon, K. B. and Fitzgerald, K. A. Importance of nucleic acid recognition in inflammation and autoimmunity. Annu. Rev. Med. 67, 323-336 (2016).
    • (2016) Annu. Rev. Med. , vol.67 , pp. 323-336
    • Barrat, F.J.1    Elkon, K.B.2    Fitzgerald, K.A.3
  • 38
    • 34247341367 scopus 로고    scopus 로고
    • TRIM25 RING-finger E3 ubiquitin ligase is essential for RIG-I-mediated antiviral activity
    • Gack, M. U. et al. TRIM25 RING-finger E3 ubiquitin ligase is essential for RIG-I-mediated antiviral activity. Nature 446, 916-920 (2007).
    • (2007) Nature , vol.446 , pp. 916-920
    • Gack, M.U.1
  • 39
    • 72249103485 scopus 로고    scopus 로고
    • A physical and regulatory map of host-influenza interactions reveals pathways in H1N1 infection
    • Shapira, S. D. et al. A physical and regulatory map of host-influenza interactions reveals pathways in H1N1 infection. Cell 139, 1255-1267 (2009).
    • (2009) Cell , vol.139 , pp. 1255-1267
    • Shapira, S.D.1
  • 40
    • 84862189812 scopus 로고    scopus 로고
    • Infection of Epstein-Barr virus in a gastric carcinoma cell line induces anchorage independence and global changes in gene expression
    • Marquitz, A. R., Mathur, A., Shair, K. H. and Raab-Traub, N. Infection of Epstein-Barr virus in a gastric carcinoma cell line induces anchorage independence and global changes in gene expression. Proc. Natl. Acad. Sci. USA 109, 9593-9598 (2012).
    • (2012) Proc. Natl. Acad. Sci. USA , vol.109 , pp. 9593-9598
    • Marquitz, A.R.1    Mathur, A.2    Shair, K.H.3    Raab-Traub, N.4
  • 41
    • 79955159135 scopus 로고    scopus 로고
    • En passant mutagenesis: A two step markerless red recombination system
    • Tischer, B. K., Smith, G. A. and Osterrieder, N. En passant mutagenesis: a two step markerless red recombination system. Methods Mol. Biol. 634, 421-430 (2010).
    • (2010) Methods Mol. Biol. , vol.634 , pp. 421-430
    • Tischer, B.K.1    Smith, G.A.2    Osterrieder, N.3
  • 42
    • 0031550784 scopus 로고    scopus 로고
    • Differentiation of the shutoff of protein synthesis by virion host shutoff and mutant gamma (1)34.5 genes of herpes simplex virus 1
    • Poon, A. P. and Roizman, B. Differentiation of the shutoff of protein synthesis by virion host shutoff and mutant gamma (1)34.5 genes of herpes simplex virus 1. Virology 229, 98-105 (1997)
    • (1997) Virology , vol.229 , pp. 98-105
    • Poon, A.P.1    Roizman, B.2
  • 43
    • 84973094812 scopus 로고    scopus 로고
    • The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update
    • Afgan, E. et al. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update. Nucleic Acids Res. 44, W3-W10 (2016). W1.
    • (2016) Nucleic Acids Res. , vol.44 , pp. W3-W10
    • Afgan, E.1
  • 44
    • 80255127234 scopus 로고    scopus 로고
    • Cutadapt removes adapter sequences from high-throughput sequencing reads
    • Martin, M. Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet.journal 17, 10-12 (2011).
    • (2011) EMBnet.journal , vol.17 , pp. 10-12
    • Martin, M.1
  • 46
    • 84876996918 scopus 로고    scopus 로고
    • TopHat2: Accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
    • Kim, D. et al. TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol. 14, R36 (2013).
    • (2013) Genome Biol. , vol.14 , pp. R36
    • Kim, D.1
  • 47
    • 84887791432 scopus 로고    scopus 로고
    • A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis
    • Dillies, M. A. et al. A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis. Brief. Bioinform. 14, 671-683 (2013).
    • (2013) Brief. Bioinform. , vol.14 , pp. 671-683
    • Dillies, M.A.1
  • 48
    • 84914179053 scopus 로고    scopus 로고
    • R Core Team. (R Foundation for Statistical Computing, Vienna, Austria)
    • R Core Team. R: A language and environment for statistical computing. (R Foundation for Statistical Computing, Vienna, Austria, 2013).
    • (2013) R: A Language and Environment for Statistical Computing
  • 50
    • 55949131282 scopus 로고    scopus 로고
    • Roles of RIG-I N-terminal tandem CARD and splice variant in TRIM25-mediated antiviral signal transduction
    • Gack, M. U. et al. Roles of RIG-I N-terminal tandem CARD and splice variant in TRIM25-mediated antiviral signal transduction. Proc. Natl. Acad. Sci. USA 105, 16743-16748 (2008).
    • (2008) Proc. Natl. Acad. Sci. USA , vol.105 , pp. 16743-16748
    • Gack, M.U.1
  • 51
    • 0033842515 scopus 로고    scopus 로고
    • Selective DNA binding and association with the CREB binding protein coactivator contribute to differential activation of alpha/beta interferon genes by interferon regulatory factors 3 and 7
    • Lin, R., Génin, P., Mamane, Y. and Hiscott, J. Selective DNA binding and association with the CREB binding protein coactivator contribute to differential activation of alpha/beta interferon genes by interferon regulatory factors 3 and 7. Mol. Cell. Biol. 20, 6342-6353 (2000)
    • (2000) Mol. Cell. Biol. , vol.20 , pp. 6342-6353
    • Lin, R.1    Génin, P.2    Mamane, Y.3    Hiscott, J.4
  • 52
    • 0030838845 scopus 로고    scopus 로고
    • Ultraspiracle, a Drosophila retinoic X receptor alpha homologue, can mobilize the human thyroid hormone receptor to transactivate a human promoter
    • Hatzivassiliou, E., Cardot, P., Zannis, V. I. and Mitsialis, S. A. Ultraspiracle, a Drosophila retinoic X receptor alpha homologue, can mobilize the human thyroid hormone receptor to transactivate a human promoter. Biochemistry 36, 9221-9231 (1997).
    • (1997) Biochemistry , vol.36 , pp. 9221-9231
    • Hatzivassiliou, E.1    Cardot, P.2    Zannis, V.I.3    Mitsialis, S.A.4
  • 53
    • 84873929727 scopus 로고    scopus 로고
    • Tousled-like kinases modulate reactivation of gammaherpesviruses from latency
    • Dillon, P. J. et al. Tousled-like kinases modulate reactivation of gammaherpesviruses from latency. Cell Host Microbe 13, 204-214 (2013).
    • (2013) Cell Host Microbe , vol.13 , pp. 204-214
    • Dillon, P.J.1
  • 54
    • 33646745146 scopus 로고    scopus 로고
    • Prediction and identification of herpes simplex virus 1-encoded microRNAs
    • Cui, C. et al. Prediction and identification of herpes simplex virus 1-encoded microRNAs. J. Virol. 80, 5499-5508 (2006).
    • (2006) J. Virol. , vol.80 , pp. 5499-5508
    • Cui, C.1
  • 55
    • 84955250204 scopus 로고    scopus 로고
    • ATP hydrolysis by the viral RNA sensor RIG-I prevents unintentional recognition of self-RNA
    • Lässig, C. et al. ATP hydrolysis by the viral RNA sensor RIG-I prevents unintentional recognition of self-RNA. eLife 4, 1-20 (2015).
    • (2015) ELife , vol.4 , pp. 1-20
    • Lässig, C.1
  • 56
    • 84857073450 scopus 로고    scopus 로고
    • Conventional protein kinase C-β (PKC-β ) and PKC-β negatively regulate RIG-I antiviral signal transduction
    • Maharaj, N. P., Wies, E., Stoll, A. and Gack, M. U. Conventional protein kinase C-β (PKC-β ) and PKC-β negatively regulate RIG-I antiviral signal transduction. J. Virol. 86, 1358-1371 (2012).
    • (2012) J. Virol. , vol.86 , pp. 1358-1371
    • Maharaj, N.P.1    Wies, E.2    Stoll, A.3    Gack, M.U.4
  • 57
    • 82055164092 scopus 로고    scopus 로고
    • ViennaRNA Package 2.0
    • Lorenz, R. et al. ViennaRNA Package 2.0. Algorithms Mol. Biol. 6, 26 (2011).
    • (2011) Algorithms Mol. Biol. , vol.6 , pp. 26
    • Lorenz, R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.