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Volumn , Issue , 2016, Pages 53-70

Biosensors for metabolic engineering

Author keywords

Biosensor; Computational design; Directed evolution; Metabolic engineering; Riboswitch; Ribozyme; Synthetic biology; Transcription factor

Indexed keywords


EID: 85032297089     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/978-81-322-2809-7_5     Document Type: Chapter
Times cited : (8)

References (79)
  • 1
    • 0032309342 scopus 로고    scopus 로고
    • Recent trends in high energy materials
    • Agrawai J (1998) Recent trends in high energy materials. Prog Energ Combust 24(1):1-30
    • (1998) Prog Energ Combust , vol.24 , Issue.1 , pp. 1-30
    • Agrawai, J.1
  • 2
    • 0036898867 scopus 로고    scopus 로고
    • Modular design of artificial transcription factors
    • Ansari AZ, Mapp AK (2002) Modular design of artificial transcription factors. Curr Opin Chem Biol 6:765-772
    • (2002) Curr Opin Chem Biol , vol.6 , pp. 765-772
    • Ansari, A.Z.1    Mapp, A.K.2
  • 3
    • 79960206790 scopus 로고    scopus 로고
    • Engineering ligand-responsive RNA controllers in yeast through the assembly of RNase III tuning modules
    • Babiskin AH, Smolke CD (2011) Engineering ligand-responsive RNA controllers in yeast through the assembly of RNase III tuning modules. Nucleic Acids Res 39(12):5299-5311. doi:10.1093/nar/gkr090
    • (2011) Nucleic Acids Res , vol.39 , Issue.12 , pp. 5299-5311
    • Babiskin, A.H.1    Smolke, C.D.2
  • 4
    • 0034581163 scopus 로고    scopus 로고
    • Tet repressor-based system for regulated gene expression in eukaryotic cells: Principles and advances
    • Baron U, Bujard H (2000) Tet repressor-based system for regulated gene expression in eukaryotic cells: principles and advances. Methods Enzym 327:401-421
    • (2000) Methods Enzym , vol.327 , pp. 401-421
    • Baron, U.1    Bujard, H.2
  • 5
    • 79952106791 scopus 로고    scopus 로고
    • From zero to hero -design-based systems metabolic engineering of Corynebacterium glutamicum for L-lysine production
    • Becker J, Zelder O, Hafner S, Schroder H, Wittmann C (2011) From zero to hero -design-based systems metabolic engineering of Corynebacterium glutamicum for L-lysine production. Metab Eng 13(2):159-168. doi:10.1016/j.ymben.2011.01.003
    • (2011) Metab Eng , vol.13 , Issue.2 , pp. 159-168
    • Becker, J.1    Zelder, O.2    Hafner, S.3    Schroder, H.4    Wittmann, C.5
  • 6
    • 0030013607 scopus 로고    scopus 로고
    • Controlling protein association and subcellular localization with a synthetic ligand that induces heterodimerization of proteins
    • Belshaw PJ, Ho SN, Crabtree GR, Schereiber SL (1996) Controlling protein association and subcellular localization with a synthetic ligand that induces heterodimerization of proteins. Proc Natl Acad Sci U S A 93(10):4604-4607
    • (1996) Proc Natl Acad Sci U S A , vol.93 , Issue.10 , pp. 4604-4607
    • Belshaw, P.J.1    Ho, S.N.2    Crabtree, G.R.3    Schereiber, S.L.4
  • 7
    • 84861434998 scopus 로고    scopus 로고
    • A high-throughput approach to identify genomic variants of bacterial metabolite producers at the single-cell level
    • Binder S, Schendzielorz G, Stabler N, Krumbach K, Hoffmann K, Bott M, Eggeling L (2012) A high-throughput approach to identify genomic variants of bacterial metabolite producers at the single-cell level. Genome Biol 13(5):R40. doi:10.1186/gb-2012-13-5-r40
    • (2012) Genome Biol , vol.13 , Issue.5 , pp. R40
    • Binder, S.1    Schendzielorz, G.2    Stabler, N.3    Krumbach, K.4    Hoffmann, K.5    Bott, M.6    Eggeling, L.7
  • 8
    • 1542351251 scopus 로고    scopus 로고
    • Transcription factors as tools for metabolic engineering in plants
    • Broun P (2004) Transcription factors as tools for metabolic engineering in plants. Curr Opin Plant Biol 7(2):202-209. doi:10.1016/j.pbi.2004.01.013
    • (2004) Curr Opin Plant Biol , vol.7 , Issue.2 , pp. 202-209
    • Broun, P.1
  • 9
    • 3242694003 scopus 로고    scopus 로고
    • Directed evolution of ligand dependence: Small-molecule-activated protein splicing
    • Buskirk AR, Ong YC, Gartner ZJ, Liu DR (2004) Directed evolution of ligand dependence: small-molecule-activated protein splicing. Proc Natl Acad Sci U S A 101(29):10505-10510. doi:10.1073/pnas.0402762101
    • (2004) Proc Natl Acad Sci U S A , vol.101 , Issue.29 , pp. 10505-10510
    • Buskirk, A.R.1    Ong, Y.C.2    Gartner, Z.J.3    Liu, D.R.4
  • 10
    • 84867195988 scopus 로고    scopus 로고
    • Synthetic RNA switches as a tool for temporal and spatial control over gene expression
    • Chang AL, Wolf JJ, Smolke CD (2012) Synthetic RNA switches as a tool for temporal and spatial control over gene expression. Curr Opin Biotechnol 23(5):679-688. doi:10.1016/j.copbio.2012.01.005
    • (2012) Curr Opin Biotechnol , vol.23 , Issue.5 , pp. 679-688
    • Chang, A.L.1    Wolf, J.J.2    Smolke, C.D.3
  • 11
    • 84886022252 scopus 로고    scopus 로고
    • Programming adaptive control to evolve increased metabolite production
    • Chou HH, Keasling JD (2013) Programming adaptive control to evolve increased metabolite production. Nat Commun 4:2595. doi:10.1038/ncomms3595
    • (2013) Nat Commun , vol.4 , pp. 2595
    • Chou, H.H.1    Keasling, J.D.2
  • 13
    • 84875515904 scopus 로고    scopus 로고
    • Transcription factor-based screens and synthetic selections for microbial small-molecule biosynthesis
    • Dietrich JA, Shis DL, Alikhani A, Keasling JD (2013) Transcription factor-based screens and synthetic selections for microbial small-molecule biosynthesis. ACS Synth Biol 2(1):47-58. doi:10.1021/sb300091d
    • (2013) ACS Synth Biol , vol.2 , Issue.1 , pp. 47-58
    • Dietrich, J.A.1    Shis, D.L.2    Alikhani, A.3    Keasling, J.D.4
  • 16
    • 48349086462 scopus 로고    scopus 로고
    • Linking the functions of unrelated proteins using a novel directed evolution domain insertion method
    • Edwards WR, Busse K, Allemann RK, Jones DD (2008) Linking the functions of unrelated proteins using a novel directed evolution domain insertion method. Nucleic Acids Res 36(13), e78. doi:10.1093/nar/gkn363
    • (2008) Nucleic Acids Res , vol.36 , Issue.13 , pp. e78
    • Edwards, W.R.1    Busse, K.2    Allemann, R.K.3    Jones, D.D.4
  • 17
    • 0025074907 scopus 로고
    • In vitro selection of RNA molecules that bind specific ligands
    • Ellington AD, Szostak JW (1990) In vitro selection of RNA molecules that bind specific ligands. Nature 340:818-822
    • (1990) Nature , vol.340 , pp. 818-822
    • Ellington, A.D.1    Szostak, J.W.2
  • 18
    • 58549118980 scopus 로고    scopus 로고
    • A novel E coli biosensor for detecting aromatic aldehydes based on a responsive inducible archaeal promoter fused to the green fluorescent protein
    • Fiorentino G, Ronca R, Bartolucci S (2009) A novel E. coli biosensor for detecting aromatic aldehydes based on a responsive inducible archaeal promoter fused to the green fluorescent protein. Appl Microbiol Biotechnol 82(1):67-77. doi:10.1007/s00253-008-1771-0
    • (2009) Appl Microbiol Biotechnol , vol.82 , Issue.1 , pp. 67-77
    • Fiorentino, G.1    Ronca, R.2    Bartolucci, S.3
  • 19
    • 57049150206 scopus 로고    scopus 로고
    • Selection and optimization of microbial hosts for biofuels production
    • Fischer CR, Klein-Marcuschamer D, Stephanopoulos G (2008) Selection and optimization of microbial hosts for biofuels production. Metab Eng 10(6):295-304. doi:10.1016/j.ymben.2008.06.009
    • (2008) Metab Eng , vol.10 , Issue.6 , pp. 295-304
    • Fischer, C.R.1    Klein-Marcuschamer, D.2    Stephanopoulos, G.3
  • 20
    • 85068882949 scopus 로고    scopus 로고
    • Protein design for biosensors
    • Roberts GCK (ed), Springer, Berlin
    • Gilardi G (2013) Protein design for biosensors. In:Roberts GCK (ed) Encyclopedia of biophysics. Springer, Berlin, pp 1979-1987. doi:10.1007/978-3-642-16712-6
    • (2013) Encyclopedia of biophysics , pp. 1979-1987
    • Gilardi, G.1
  • 22
    • 23844465160 scopus 로고    scopus 로고
    • Directed evolution of protein switches and their application to the creation of ligand-binding proteins
    • Guntas G, Mansell TJ, Kim JR, Ostermeier M (2005) Directed evolution of protein switches and their application to the creation of ligand-binding proteins. Proc Natl Acad Sci U S A 102(32):11224-11229. doi:10.1073/pnas.0502673102
    • (2005) Proc Natl Acad Sci U S A , vol.102 , Issue.32 , pp. 11224-11229
    • Guntas, G.1    Mansell, T.J.2    Kim, J.R.3    Ostermeier, M.4
  • 23
    • 8844263869 scopus 로고    scopus 로고
    • A molecular switch created by in vitro recombination of nonhomologous genes
    • Guntas G, Mitchell SF, Ostermeier M (2004) A molecular switch created by in vitro recombination of nonhomologous genes. Chem Biol 11(11):1483-1487. doi:10.1016/j.chembiol.2004.08.020
    • (2004) Chem Biol , vol.11 , Issue.11 , pp. 1483-1487
    • Guntas, G.1    Mitchell, S.F.2    Ostermeier, M.3
  • 24
    • 0346500466 scopus 로고    scopus 로고
    • Creation of an allosteric enzyme by domain insertion
    • Guntas G, Ostermeier M (2004) Creation of an allosteric enzyme by domain insertion. J Mol Biol 336(1):263-273. doi:10.1016/j.jmb.2003.12.016
    • (2004) J Mol Biol , vol.336 , Issue.1 , pp. 263-273
    • Guntas, G.1    Ostermeier, M.2
  • 25
    • 0037140747 scopus 로고    scopus 로고
    • Deoxygenation of polyhydroxybenzenes:An alternative strategy for the benzene-free synthesis of aromatic chemicals
    • Hansen CA, Frost J (2002) Deoxygenation of polyhydroxybenzenes:an alternative strategy for the benzene-free synthesis of aromatic chemicals. J Am Chem Soc 124(21):5926-5927
    • (2002) J Am Chem Soc , vol.124 , Issue.21 , pp. 5926-5927
    • Hansen, C.A.1    Frost, J.2
  • 26
    • 34548311711 scopus 로고    scopus 로고
    • Forty years of in vitro evolution
    • Joyce GF (2007) Forty years of in vitro evolution. Angew Chem Int Ed Engl 46(34):6420-6436. doi:10.1002/anie.200701369
    • (2007) Angew Chem Int Ed Engl , vol.46 , Issue.34 , pp. 6420-6436
    • Joyce, G.F.1
  • 27
    • 84859772410 scopus 로고    scopus 로고
    • Synthetic biology and the development of tools for metabolic engineering
    • Keasling JD (2012) Synthetic biology and the development of tools for metabolic engineering. Metab Eng 14(3):189-195. doi:10.1016/j.ymben.2012.01.004
    • (2012) Metab Eng , vol.14 , Issue.3 , pp. 189-195
    • Keasling, J.D.1
  • 28
    • 84899696363 scopus 로고    scopus 로고
    • Large-scale de novo DNA synthesis: Technologies and applications
    • Kosuri S, Church GM (2014) Large-scale de novo DNA synthesis: technologies and applications. Nat Methods 11(5):499-507. doi:10.1038/nmeth.2918
    • (2014) Nat Methods , vol.11 , Issue.5 , pp. 499-507
    • Kosuri, S.1    Church, G.M.2
  • 29
    • 84858189341 scopus 로고    scopus 로고
    • Rational design and tuning of ribozyme-based devices
    • Liang J, Smolke C (2012) Rational design and tuning of ribozyme-based devices. Methods Mol Biol 848:439-454
    • (2012) Methods Mol Biol , vol.848 , pp. 439-454
    • Liang, J.1    Smolke, C.2
  • 30
    • 84986247556 scopus 로고    scopus 로고
    • Applications and advances of metabolite biosensors for metabolic engineering
    • Liu D, Evans T, Zhang F (2015) Applications and advances of metabolite biosensors for metabolic engineering. Metab Eng 31:35-43. doi:10.1016/j. ymben.2015.06.008
    • (2015) Metab Eng , vol.31 , pp. 35-43
    • Liu, D.1    Evans, T.2    Zhang, F.3
  • 31
    • 84924239544 scopus 로고    scopus 로고
    • Negative feedback regulation of fatty acid production based on a malonyl-CoA sensor-actuator
    • Liu D, Xiao Y, Evans BS, Zhang F (2015) Negative feedback regulation of fatty acid production based on a malonyl-CoA sensor-actuator. ACS Synth Biol 4(2):132-140. doi:10.1021/sb400158w
    • (2015) ACS Synth Biol , vol.4 , Issue.2 , pp. 132-140
    • Liu, D.1    Xiao, Y.2    Evans, B.S.3    Zhang, F.4
  • 33
    • 84870607623 scopus 로고    scopus 로고
    • Novel insights from hybrid LacI/GalR proteins: Family-wide functional attributes and biologically significant variation in transcription repression
    • Meinhardt S, Manley MW Jr, Becker NA, Hessman JA, Maher LJ 3rd, Swint-Kruse L (2012) Novel insights from hybrid LacI/GalR proteins: family-wide functional attributes and biologically significant variation in transcription repression. Nucleic Acids Res 40(21):11139-11154. doi:10.1093/nar/gks806
    • (2012) Nucleic Acids Res , vol.40 , Issue.21 , pp. 11139-11154
    • Meinhardt, S.1    Manley, M.W.2    Becker, N.A.3    Hessman, J.A.4    Maher, L.J.5    Swint-Kruse, L.6
  • 34
    • 84862167101 scopus 로고    scopus 로고
    • High-throughput enzyme evolution in Saccharomyces cerevisiae using a synthetic RNA switch
    • Michener JK, Smolke CD (2012) High-throughput enzyme evolution in Saccharomyces cerevisiae using a synthetic RNA switch. Metab Eng 14(4):306-316. doi:10.1016/j.ymben.2012.04.004
    • (2012) Metab Eng , vol.14 , Issue.4 , pp. 306-316
    • Michener, J.K.1    Smolke, C.D.2
  • 35
    • 84857050180 scopus 로고    scopus 로고
    • Applications of genetically-encoded biosensors for the construction and control of biosynthetic pathways
    • Michener JK, Thodey K, Liang JC, Smolke CD (2012) Applications of genetically-encoded biosensors for the construction and control of biosynthetic pathways. Metab Eng 14(3):212-222. doi:10.1016/j. ymben.2011.09.004
    • (2012) Metab Eng , vol.14 , Issue.3 , pp. 212-222
    • Michener, J.K.1    Thodey, K.2    Liang, J.C.3    Smolke, C.D.4
  • 36
    • 84939268936 scopus 로고    scopus 로고
    • Tolerance engineering in bacteria for the production of advanced biofuels and chemicals
    • Mukhopadhyay A (2015) Tolerance engineering in bacteria for the production of advanced biofuels and chemicals. Trends Microbiol 23(8):498-508. doi:10.1016/j.tim.2015.04.008
    • (2015) Trends Microbiol , vol.23 , Issue.8 , pp. 498-508
    • Mukhopadhyay, A.1
  • 37
    • 63249090231 scopus 로고    scopus 로고
    • An efficient platform for genetic selection and screening of gene switches in Escherichia coli
    • Muranaka N, Sharma V, Nomura Y, Yokobayashi Y (2009) An efficient platform for genetic selection and screening of gene switches in Escherichia coli. Nucleic Acids Res 37(5), e39. doi:10.1093/nar/gkp039
    • (2009) Nucleic Acids Res , vol.37 , Issue.5 , pp. e39
    • Muranaka, N.1    Sharma, V.2    Nomura, Y.3    Yokobayashi, Y.4
  • 39
    • 84876004070 scopus 로고    scopus 로고
    • Computational design and biosensor applications of small molecule-sensing allosteric ribozymes
    • Penchovsky R (2013) Computational design and biosensor applications of small molecule-sensing allosteric ribozymes. Biomacromolecules 14(4):1240-1249. doi:10.1021/bm400299a
    • (2013) Biomacromolecules , vol.14 , Issue.4 , pp. 1240-1249
    • Penchovsky, R.1
  • 40
    • 84904735313 scopus 로고    scopus 로고
    • Computational design of allosteric ribozymes as molecular biosensors
    • Penchovsky R (2014) Computational design of allosteric ribozymes as molecular biosensors. Biotechnol Adv 32(5):1015-1027. doi:10.1016/j. biotechadv.2014.05.005
    • (2014) Biotechnol Adv , vol.32 , Issue.5 , pp. 1015-1027
    • Penchovsky, R.1
  • 41
    • 27944493648 scopus 로고    scopus 로고
    • Computational design and experimental validation of oligonucleotide-sensing allosteric ribozymes
    • Penchovsky R, Breaker RR (2005) Computational design and experimental validation of oligonucleotide-sensing allosteric ribozymes. Nat Biotechnol 23(11):1424-1433. doi:10.1038/nbt1155
    • (2005) Nat Biotechnol , vol.23 , Issue.11 , pp. 1424-1433
    • Penchovsky, R.1    Breaker, R.R.2
  • 42
    • 33845624857 scopus 로고    scopus 로고
    • Microbial sensors for small molecules:Development of a mevalonate biosensor
    • Pfleger BF, Pitera DJ, Newman JD, Martin VJ, Keasling JD (2007) Microbial sensors for small molecules:development of a mevalonate biosensor. Metab Eng 9(1):30-38. doi:10.1016/j.ymben.2006.08.002
    • (2007) Metab Eng , vol.9 , Issue.1 , pp. 30-38
    • Pfleger, B.F.1    Pitera, D.J.2    Newman, J.D.3    Martin, V.J.4    Keasling, J.D.5
  • 43
    • 84906351164 scopus 로고    scopus 로고
    • Genetically-encoded biosensors for monitoring cellular stress in bioprocessing
    • Polizzi KM, Kontoravdi C (2015) Genetically-encoded biosensors for monitoring cellular stress in bioprocessing. Curr Opin Biotechnol 31:50-56. doi:10.1016/j.copbio.2014.07.011
    • (2015) Curr Opin Biotechnol , vol.31 , pp. 50-56
    • Polizzi, K.M.1    Kontoravdi, C.2
  • 44
    • 84908055358 scopus 로고    scopus 로고
    • Rule-based design of synthetic transcription factors in eukaryotes
    • Purcell O, Peccoud J, Lu TK (2014) Rule-based design of synthetic transcription factors in eukaryotes. ACS Synth Biol 3(10):737-744. doi:10.1021/sb400134k
    • (2014) ACS Synth Biol , vol.3 , Issue.10 , pp. 737-744
    • Purcell, O.1    Peccoud, J.2    Lu, T.K.3
  • 45
    • 84919359797 scopus 로고    scopus 로고
    • Evolution-guided optimization of biosynthetic pathways
    • Raman S, Rogers JK, Taylor ND, Church GM (2014) Evolution-guided optimization of biosynthetic pathways. Proc Natl Acad Sci U S A 111(50):17803-17808. doi:10.1073/pnas.1409523111
    • (2014) Proc Natl Acad Sci U S A , vol.111 , Issue.50 , pp. 17803-17808
    • Raman, S.1    Rogers, J.K.2    Taylor, N.D.3    Church, G.M.4
  • 46
    • 84858286527 scopus 로고    scopus 로고
    • Evolution of an alkane-inducible biosensor for increased responsive-ness to short-chain alkanes
    • Reed B, Blazeck J, Alper H (2012) Evolution of an alkane-inducible biosensor for increased responsive-ness to short-chain alkanes. J Biotechnol 158(3):75-79. doi:10.1016/j.jbiotec.2012.01.028
    • (2012) J Biotechnol , vol.158 , Issue.3 , pp. 75-79
    • Reed, B.1    Blazeck, J.2    Alper, H.3
  • 47
    • 39149123464 scopus 로고    scopus 로고
    • Characterization and distribution of petroleum hydrocarbons and heavy metals in groundwater from three Italian tank farms
    • Riccardi C, Di Filippo P, Pomata D, Incoronato F, Di Basilio M, Papini MP, Spicaglia S (2008) Characterization and distribution of petroleum hydrocarbons and heavy metals in groundwater from three Italian tank farms. Sci Total Environ 393(1):50-63. doi:10.1016/j.scitotenv.2007.12.010
    • (2008) Sci Total Environ , vol.393 , Issue.1 , pp. 50-63
    • Riccardi, C.1    Di Filippo, P.2    Pomata, D.3    Incoronato, F.4    Di Basilio, M.5    Papini, M.P.6    Spicaglia, S.7
  • 48
    • 0033107932 scopus 로고    scopus 로고
    • Tolerance and specificity of recombinant 6-methylsalicyclic acid synthase
    • Richardson M, Pohl N (1999) Tolerance and specificity of recombinant 6-methylsalicyclic acid synthase. Metab Eng 1:180-187
    • (1999) Metab Eng , vol.1 , pp. 180-187
    • Richardson, M.1    Pohl, N.2
  • 49
    • 79956088540 scopus 로고    scopus 로고
    • De novo enzyme design using Rosetta3
    • Ritcher F, Leaver-Fay A, Khare SD, Bjelic S, Baker D (2011) De novo enzyme design using Rosetta3. PLoS One 6(5):e19230-e19242. doi:10.1371/journal. pone.0019230.g001
    • (2011) PLoS One , vol.6 , Issue.5 , pp. e19230-e19242
    • Ritcher, F.1    Leaver-Fay, A.2    Khare, S.D.3    Bjelic, S.4    Baker, D.5
  • 50
    • 74949140470 scopus 로고    scopus 로고
    • Direct electrochemistry of drug metabolizing human flavin-containing monooxygenase:Electrochemical turnover of benzydamine and tamoxifen
    • Sadeghi SJ, Meirinhos R, Catucci G, Dodhia VR, Nardo GD, Gilardi G (2010) Direct electrochemistry of drug metabolizing human flavin-containing monooxygenase:electrochemical turnover of benzydamine and tamoxifen. J Am Chem Soc 132:458-459. doi:10.1021/ja909261p
    • (2010) J Am Chem Soc , vol.132 , pp. 458-459
    • Sadeghi, S.J.1    Meirinhos, R.2    Catucci, G.3    Dodhia, V.R.4    Nardo, G.D.5    Gilardi, G.6
  • 51
    • 79958715193 scopus 로고    scopus 로고
    • Optimization of a heterologous pathway for the production of flavonoids from glucose
    • Santos CN, Koffas M, Stephanopoulos G (2011) Optimization of a heterologous pathway for the production of flavonoids from glucose. Metab Eng 13(4):392-400. doi:10.1016/j.ymben.2011.02.002
    • (2011) Metab Eng , vol.13 , Issue.4 , pp. 392-400
    • Santos, C.N.1    Koffas, M.2    Stephanopoulos, G.3
  • 52
    • 0016721604 scopus 로고
    • The regulatory region of the L-arabinose operon: A physical, genetic and physiological study
    • Schleif R, Lis J (1967) The regulatory region of the L-arabinose operon: a physical, genetic and physiological study. J Mol Biol 95:417-431
    • (1967) J Mol Biol , vol.95 , pp. 417-431
    • Schleif, R.1    Lis, J.2
  • 53
    • 6944229634 scopus 로고    scopus 로고
    • Creation and discovery of ligand-receptor pairs for transcriptional control with small molecules
    • Schwimmer LJ, Rohatgi P, Azizi B, Seley KL, Doyle DF (2004) Creation and discovery of ligand-receptor pairs for transcriptional control with small molecules. Proc Natl Acad Sci U S A 101(41):14707-14712. doi:10.1073/pnas.0400884101
    • (2004) Proc Natl Acad Sci U S A , vol.101 , Issue.41 , pp. 14707-14712
    • Schwimmer, L.J.1    Rohatgi, P.2    Azizi, B.3    Seley, K.L.4    Doyle, D.F.5
  • 54
    • 84927591028 scopus 로고    scopus 로고
    • Modular, multi-input transcriptional logic gating with orthogonal LacI/GalR family chimeras
    • Shis DL, Hussain F, Meinhardt S, Swint-Kruse L, Bennett MR (2014) Modular, multi-input transcriptional logic gating with orthogonal LacI/GalR family chimeras. ACS Synth Biol 3(9):645-651. doi:10.1021/sb500262f
    • (2014) ACS Synth Biol , vol.3 , Issue.9 , pp. 645-651
    • Shis, D.L.1    Hussain, F.2    Meinhardt, S.3    Swint-Kruse, L.4    Bennett, M.R.5
  • 55
    • 19444369319 scopus 로고    scopus 로고
    • A bacterial biosensor of endocrine modulators
    • Skretas G, Wood DW (2005) A bacterial biosensor of endocrine modulators. J Mol Biol 349(3):464-474. doi:10.1016/j.jmb.2005.04.009
    • (2005) J Mol Biol , vol.349 , Issue.3 , pp. 464-474
    • Skretas, G.1    Wood, D.W.2
  • 56
    • 13244252218 scopus 로고    scopus 로고
    • Regulation of protein activity with small-molecule-controlled inteins
    • Skretas G, Wood DW (2005) Regulation of protein activity with small-molecule-controlled inteins. Protein Sci 14(2):523-532. doi:10.1110/ps.04996905
    • (2005) Protein Sci , vol.14 , Issue.2 , pp. 523-532
    • Skretas, G.1    Wood, D.W.2
  • 57
    • 84940774152 scopus 로고    scopus 로고
    • Advances in synthetic dynamic circuits design: Using novel synthetic parts to engineer new generations of gene oscillations
    • Sowa SW, Gelderman G, Contreras LM (2015) Advances in synthetic dynamic circuits design: using novel synthetic parts to engineer new generations of gene oscillations. Curr Opin Biotechnol 36:161-167. doi:10.1016/j.copbio.2015.08.020
    • (2015) Curr Opin Biotechnol , vol.36 , pp. 161-167
    • Sowa, S.W.1    Gelderman, G.2    Contreras, L.M.3
  • 58
    • 84869420041 scopus 로고    scopus 로고
    • Synthetic biology and metabolic engineering
    • Stephanopoulos G (2012) Synthetic biology and metabolic engineering. ACS Synth Biol 1(11):514-525. doi:10.1021/sb300094q
    • (2012) ACS Synth Biol , vol.1 , Issue.11 , pp. 514-525
    • Stephanopoulos, G.1
  • 59
    • 0031171217 scopus 로고    scopus 로고
    • Rational design of allosteric ribozymes
    • Tang J, Breaker RR (1997) Rational design of allosteric ribozymes. Chem Biol 4:453-459
    • (1997) Chem Biol , vol.4 , pp. 453-459
    • Tang, J.1    Breaker, R.R.2
  • 60
    • 79251580632 scopus 로고    scopus 로고
    • Design and application of a mevalonate-responsive regulatory protein
    • Tang SY, Cirino PC (2011) Design and application of a mevalonate-responsive regulatory protein. Angew Chem Int Edit 50(5):1084-1086. doi:10.1002/anie.201006083
    • (2011) Angew Chem Int Edit , vol.50 , Issue.5 , pp. 1084-1086
    • Tang, S.Y.1    Cirino, P.C.2
  • 61
    • 42149120662 scopus 로고    scopus 로고
    • AraC regulatory protein mutants with altered effector specificity
    • Tang SY, Fazelinia H, Cirino PC (2008) AraC regulatory protein mutants with altered effector specificity. J Am Chem Soc 130:5267-5271
    • (2008) J Am Chem Soc , vol.130 , pp. 5267-5271
    • Tang, S.Y.1    Fazelinia, H.2    Cirino, P.C.3
  • 62
    • 84879999713 scopus 로고    scopus 로고
    • Screening for enhanced triacetic acid lactone production by recombinant Escherichia coli expressing a designed triacetic acid lactone reporter
    • Tang SY, Qian S, Akinterinwa O, Frei CS, Gredell JA, Cirino PC (2013) Screening for enhanced triacetic acid lactone production by recombinant Escherichia coli expressing a designed triacetic acid lactone reporter. J Am Chem Soc 135(27):10099-10103. doi:10.1021/ja402654z
    • (2013) J Am Chem Soc , vol.135 , Issue.27 , pp. 10099-10103
    • Tang, S.Y.1    Qian, S.2    Akinterinwa, O.3    Frei, C.S.4    Gredell, J.A.5    Cirino, P.C.6
  • 63
    • 79251610629 scopus 로고    scopus 로고
    • Computational design of auxotrophy-dependent microbial biosensors for combinatorial metabolic engineering experiments
    • Tepper N, Tomer S (2011) Computational design of auxotrophy-dependent microbial biosensors for combinatorial metabolic engineering experiments. PLoS ONE 6, e16274. doi:10.1371/journal.pone.0016274. g001
    • (2011) PLoS ONE , vol.6 , pp. e16274
    • Tepper, N.1    Tomer, S.2
  • 65
    • 80054074740 scopus 로고    scopus 로고
    • The structure of a tetrahydrofolate-sensing riboswitch reveals two ligand binding sites in a single aptamer
    • Trausch JJ, Ceres P, Reyes FE, Batey RT (2011) The structure of a tetrahydrofolate-sensing riboswitch reveals two ligand binding sites in a single aptamer. Structure 19(10):1413-1423. doi:10.1016/j.str.2011.06.019
    • (2011) Structure , vol.19 , Issue.10 , pp. 1413-1423
    • Trausch, J.J.1    Ceres, P.2    Reyes, F.E.3    Batey, R.T.4
  • 67
    • 84862689750 scopus 로고    scopus 로고
    • Improved L-lysine production with Corynebacterium glutamicum and systemic insight into citrate synthase flux and activity
    • van Ooyen J, Noack S, Bott M, Reth A, Eggeling L (2012) Improved L-lysine production with Corynebacterium glutamicum and systemic insight into citrate synthase flux and activity. Biotechnol Bioeng 109:2070-2081. doi:10.1002/bit.24486/abstract
    • (2012) Biotechnol Bioeng , vol.109 , pp. 2070-2081
    • van Ooyen, J.1    Noack, S.2    Bott, M.3    Reth, A.4    Eggeling, L.5
  • 69
    • 77950885839 scopus 로고    scopus 로고
    • Inducible gene expression from the plastid genome by a synthetic riboswitch
    • Verhounig A, Karcher D, Bock R (2010) Inducible gene expression from the plastid genome by a synthetic riboswitch. Proc Natl Acad Sci U S A 107(14):6204-6209. doi:10.1073/pnas.0914423107
    • (2010) Proc Natl Acad Sci U S A , vol.107 , Issue.14 , pp. 6204-6209
    • Verhounig, A.1    Karcher, D.2    Bock, R.3
  • 70
    • 84876376374 scopus 로고    scopus 로고
    • De novo design of a synthetic riboswitch that regulates transcription termination
    • Wachsmuth M, Findeiss S, Weissheimer N, Stadler PF, Morl M (2013) De novo design of a synthetic riboswitch that regulates transcription termination. Nucleic Acids Res 41(4):2541-2551. doi:10.1093/nar/gks1330
    • (2013) Nucleic Acids Res , vol.41 , Issue.4 , pp. 2541-2551
    • Wachsmuth, M.1    Findeiss, S.2    Weissheimer, N.3    Stadler, P.F.4    Morl, M.5
  • 71
    • 84862807289 scopus 로고    scopus 로고
    • Biocatalyst development by directed evolution
    • Wang M, Si T, Zhao H (2012) Biocatalyst development by directed evolution. Bioresour Technol 115:117-125. doi:10.1016/j.biortech.2012.01.054
    • (2012) Bioresour Technol , vol.115 , pp. 117-125
    • Wang, M.1    Si, T.2    Zhao, H.3
  • 72
    • 34547639506 scopus 로고    scopus 로고
    • Tetracycline aptamer-controlled regulation of pre-mRNA splicing in yeast
    • Weigand JE, Suess B (2007) Tetracycline aptamer-controlled regulation of pre-mRNA splicing in yeast. Nucleic Acids Res 35(12):4179-4185. doi:10.1093/nar/gkm425
    • (2007) Nucleic Acids Res , vol.35 , Issue.12 , pp. 4179-4185
    • Weigand, J.E.1    Suess, B.2
  • 73
    • 84905668376 scopus 로고    scopus 로고
    • Improving fatty acids production by engineering dynamic pathway regulation and metabolic control
    • Xu P, Li L, Zhang F, Stephanopoulos G, Koffas M (2014) Improving fatty acids production by engineering dynamic pathway regulation and metabolic control. Proc Natl Acad Sci U S A 111(31):11299-11304. doi:10.1073/pnas.1406401111
    • (2014) Proc Natl Acad Sci U S A , vol.111 , Issue.31 , pp. 11299-11304
    • Xu, P.1    Li, L.2    Zhang, F.3    Stephanopoulos, G.4    Koffas, M.5
  • 74
    • 84896702596 scopus 로고    scopus 로고
    • Design and kinetic analysis of a hybrid promoter-regulator system for malonyl-CoA sensing in Escherichia coli
    • Xu P, Wang W, Li L, Bhan N, Zhang F, Koffas MA (2014) Design and kinetic analysis of a hybrid promoter-regulator system for malonyl-CoA sensing in Escherichia coli. ACS Chem Biol 9(2):451-458. doi:10.1021/cb400623m
    • (2014) ACS Chem Biol , vol.9 , Issue.2 , pp. 451-458
    • Xu, P.1    Wang, W.2    Li, L.3    Bhan, N.4    Zhang, F.5    Koffas, M.A.6
  • 75
    • 85020237496 scopus 로고    scopus 로고
    • Bacterial chitinase: Nature and perspectives for sustainable bioproduction
    • Yan Q, Fong SS (2015) Bacterial chitinase: nature and perspectives for sustainable bioproduction. Bioresour Bioprocess 2:31-39. doi:10.1186/s40643-015-0057-5
    • (2015) Bioresour Bioprocess , vol.2 , pp. 31-39
    • Yan, Q.1    Fong, S.S.2
  • 76
    • 84913587392 scopus 로고    scopus 로고
    • Metabolic engineering to enhance the value of plants as green factories
    • Yuan L, Grotewold E (2015) Metabolic engineering to enhance the value of plants as green factories. Metab Eng 27:83-91. doi:10.1016/j. ymben.2014.11.005
    • (2015) Metab Eng , vol.27 , pp. 83-91
    • Yuan, L.1    Grotewold, E.2
  • 77
    • 84859633048 scopus 로고    scopus 로고
    • Design of a dynamic sensor-regulator system for production of chemicals and fuels derived from fatty acids
    • Zhang F, Carothers JM, Keasling JD (2012) Design of a dynamic sensor-regulator system for production of chemicals and fuels derived from fatty acids. Nat Biotechnol 30(4):354-359. doi:10.1038/nbt.2149
    • (2012) Nat Biotechnol , vol.30 , Issue.4 , pp. 354-359
    • Zhang, F.1    Carothers, J.M.2    Keasling, J.D.3
  • 78
    • 84942599630 scopus 로고    scopus 로고
    • Combining C6 and C5 sugar metabolism for enhancing microbial bioconversion
    • Zhang GC, Liu JJ, Kong II, Kwak S, Jin YS (2015) Combining C6 and C5 sugar metabolism for enhancing microbial bioconversion. Curr Opin Chem Biol 29:49-57. doi:10.1016/j.cbpa.2015.09.008
    • (2015) Curr Opin Chem Biol , vol.29 , pp. 49-57
    • Zhang, G.C.1    Liu, J.J.2    Kong, I.I.3    Kwak, S.4    Jin, Y.S.5
  • 79
    • 84934907570 scopus 로고    scopus 로고
    • Exploring lysine riboswitch for metabolic flux control and improvement of L-lysine synthesis in Corynebacterium glutamicum
    • Zhou LB, Zeng AP (2015) Exploring lysine riboswitch for metabolic flux control and improvement of L-lysine synthesis in Corynebacterium glutamicum. ACS Synth Biol 4(6):729-734. doi:10.1021/sb500332c
    • (2015) ACS Synth Biol , vol.4 , Issue.6 , pp. 729-734
    • Zhou, L.B.1    Zeng, A.P.2


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