메뉴 건너뛰기




Volumn 171, Issue 5, 2017, Pages 1029-1041.e21

Erratum: Universal Patterns of Selection in Cancer and Somatic Tissues (Cell (2017) 171(5) (1029–1041.e21) (S0092867417311364) (10.1016/j.cell.2017.09.042));Universal Patterns of Selection in Cancer and Somatic Tissues

Author keywords

cancer; evolution; genomics; mutations; selection

Indexed keywords

ARTICLE; CANCER GENETICS; EXOME; GENE MUTATION; GENETIC SELECTION; GENOMICS; GERM LINE; HUMAN; HUMAN TISSUE; MISSENSE MUTATION; NEGATIVE SELECTION; NONSENSE MUTATION; POSITIVE SELECTION; PRIORITY JOURNAL; SOMATIC CELL; SYNONYMOUS MUTATION; TUMOR GENE; BIOLOGICAL MODEL; GENETICS; IMMUNOLOGY; INDEL MUTATION; MICROSATELLITE INSTABILITY; MUTATION RATE; NEOPLASM; PATHOLOGY; POINT MUTATION; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 85031823255     PISSN: 00928674     EISSN: 10974172     Source Type: Journal    
DOI: 10.1016/j.cell.2018.06.001     Document Type: Erratum
Times cited : (934)

References (72)
  • 2
    • 84965187257 scopus 로고
    • The age distribution of cancer and a multi-stage theory of carcinogenesis
    • Armitage, P., Doll, R., The age distribution of cancer and a multi-stage theory of carcinogenesis. Br. J. Cancer 8 (1954), 1–12.
    • (1954) Br. J. Cancer , vol.8 , pp. 1-12
    • Armitage, P.1    Doll, R.2
  • 4
    • 33645124560 scopus 로고    scopus 로고
    • Negative clonal selection in tumor evolution
    • Beckman, R.A., Loeb, L.A., Negative clonal selection in tumor evolution. Genetics 171 (2005), 2123–2131.
    • (2005) Genetics , vol.171 , pp. 2123-2131
    • Beckman, R.A.1    Loeb, L.A.2
  • 8
    • 0016692602 scopus 로고
    • Mutation selection and the natural history of cancer
    • Cairns, J., Mutation selection and the natural history of cancer. Nature 255 (1975), 197–200.
    • (1975) Nature , vol.255 , pp. 197-200
    • Cairns, J.1
  • 9
    • 84945437978 scopus 로고    scopus 로고
    • The mini-driver model of polygenic cancer evolution
    • Castro-Giner, F., Ratcliffe, P., Tomlinson, I., The mini-driver model of polygenic cancer evolution. Nat. Rev. Cancer 15 (2015), 680–685.
    • (2015) Nat. Rev. Cancer , vol.15 , pp. 680-685
    • Castro-Giner, F.1    Ratcliffe, P.2    Tomlinson, I.3
  • 11
    • 84899721302 scopus 로고    scopus 로고
    • Structural analysis of the KANSL1/WDR5/KANSL2 complex reveals that WDR5 is required for efficient assembly and chromatin targeting of the NSL complex
    • Dias, J., Van Nguyen, N., Georgiev, P., Gaub, A., Brettschneider, J., Cusack, S., Kadlec, J., Akhtar, A., Structural analysis of the KANSL1/WDR5/KANSL2 complex reveals that WDR5 is required for efficient assembly and chromatin targeting of the NSL complex. Genes Dev. 28 (2014), 929–942.
    • (2014) Genes Dev. , vol.28 , pp. 929-942
    • Dias, J.1    Van Nguyen, N.2    Georgiev, P.3    Gaub, A.4    Brettschneider, J.5    Cusack, S.6    Kadlec, J.7    Akhtar, A.8
  • 13
    • 84922527340 scopus 로고    scopus 로고
    • Systematic analysis of noncoding somatic mutations and gene expression alterations across 14 tumor types
    • Fredriksson, N.J., Ny, L., Nilsson, J.A., Larsson, E., Systematic analysis of noncoding somatic mutations and gene expression alterations across 14 tumor types. Nat. Genet. 46 (2014), 1258–1263.
    • (2014) Nat. Genet. , vol.46 , pp. 1258-1263
    • Fredriksson, N.J.1    Ny, L.2    Nilsson, J.A.3    Larsson, E.4
  • 15
    • 84899477038 scopus 로고    scopus 로고
    • Subclonal variant calling with multiple samples and prior knowledge
    • Gerstung, M., Papaemmanuil, E., Campbell, P.J., Subclonal variant calling with multiple samples and prior knowledge. Bioinformatics 30 (2014), 1198–1204.
    • (2014) Bioinformatics , vol.30 , pp. 1198-1204
    • Gerstung, M.1    Papaemmanuil, E.2    Campbell, P.J.3
  • 17
    • 0028168856 scopus 로고
    • A codon-based model of nucleotide substitution for protein-coding DNA sequences
    • Goldman, N., Yang, Z., A codon-based model of nucleotide substitution for protein-coding DNA sequences. Mol. Biol. Evol. 11 (1994), 725–736.
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 725-736
    • Goldman, N.1    Yang, Z.2
  • 18
    • 33747869580 scopus 로고    scopus 로고
    • Statistical analysis of pathogenicity of somatic mutations in cancer
    • Greenman, C., Wooster, R., Futreal, P.A., Stratton, M.R., Easton, D.F., Statistical analysis of pathogenicity of somatic mutations in cancer. Genetics 173 (2006), 2187–2198.
    • (2006) Genetics , vol.173 , pp. 2187-2198
    • Greenman, C.1    Wooster, R.2    Futreal, P.A.3    Stratton, M.R.4    Easton, D.F.5
  • 21
    • 84989860991 scopus 로고    scopus 로고
    • Classification and characterization of microsatellite instability across 18 cancer types
    • Hause, R.J., Pritchard, C.C., Shendure, J., Salipante, S.J., Classification and characterization of microsatellite instability across 18 cancer types. Nat. Med. 22 (2016), 1342–1350.
    • (2016) Nat. Med. , vol.22 , pp. 1342-1350
    • Hause, R.J.1    Pritchard, C.C.2    Shendure, J.3    Salipante, S.J.4
  • 24
    • 58149168840 scopus 로고    scopus 로고
    • The population genetics of dN/dS
    • Kryazhimskiy, S., Plotkin, J.B., The population genetics of dN/dS. PLoS Genet., 4, 2008, e1000304.
    • (2008) PLoS Genet. , vol.4 , pp. e1000304
    • Kryazhimskiy, S.1    Plotkin, J.B.2
  • 29
    • 84945558398 scopus 로고    scopus 로고
    • The Cancer Genome Atlas Clinical Explorer: a web and mobile interface for identifying clinical-genomic driver associations
    • Lee, H., Palm, J., Grimes, S.M., Ji, H.P., The Cancer Genome Atlas Clinical Explorer: a web and mobile interface for identifying clinical-genomic driver associations. Genome Med., 7, 2015, 112.
    • (2015) Genome Med. , vol.7 , pp. 112
    • Lee, H.1    Palm, J.2    Grimes, S.M.3    Ji, H.P.4
  • 31
    • 84942236803 scopus 로고    scopus 로고
    • Somatic mutation in cancer and normal cells
    • Martincorena, I., Campbell, P.J., Somatic mutation in cancer and normal cells. Science 349 (2015), 1483–1489.
    • (2015) Science , vol.349 , pp. 1483-1489
    • Martincorena, I.1    Campbell, P.J.2
  • 32
    • 84860512528 scopus 로고    scopus 로고
    • Evidence of non-random mutation rates suggests an evolutionary risk management strategy
    • Martincorena, I., Seshasayee, A.S., Luscombe, N.M., Evidence of non-random mutation rates suggests an evolutionary risk management strategy. Nature 485 (2012), 95–98.
    • (2012) Nature , vol.485 , pp. 95-98
    • Martincorena, I.1    Seshasayee, A.S.2    Luscombe, N.M.3
  • 35
    • 84908032938 scopus 로고    scopus 로고
    • Tug-of-war between driver and passenger mutations in cancer and other adaptive processes
    • McFarland, C.D., Mirny, L.A., Korolev, K.S., Tug-of-war between driver and passenger mutations in cancer and other adaptive processes. Proc. Natl. Acad. Sci. USA 111 (2014), 15138–15143.
    • (2014) Proc. Natl. Acad. Sci. USA , vol.111 , pp. 15138-15143
    • McFarland, C.D.1    Mirny, L.A.2    Korolev, K.S.3
  • 37
    • 0019134329 scopus 로고
    • Molecular evolution of mRNA: a method for estimating evolutionary rates of synonymous and amino acid substitutions from homologous nucleotide sequences and its application
    • Miyata, T., Yasunaga, T., Molecular evolution of mRNA: a method for estimating evolutionary rates of synonymous and amino acid substitutions from homologous nucleotide sequences and its application. J. Mol. Evol. 16 (1980), 23–36.
    • (1980) J. Mol. Evol. , vol.16 , pp. 23-36
    • Miyata, T.1    Yasunaga, T.2
  • 38
    • 0029131290 scopus 로고
    • The somatic mutation theory of ageing
    • Morley, A.A., The somatic mutation theory of ageing. Mutat. Res. 338 (1995), 19–23.
    • (1995) Mutat. Res. , vol.338 , pp. 19-23
    • Morley, A.A.1
  • 39
    • 84979960214 scopus 로고    scopus 로고
    • OncodriveFML: a general framework to identify coding and non-coding regions with cancer driver mutations
    • Mularoni, L., Sabarinathan, R., Deu-Pons, J., Gonzalez-Perez, A., López-Bigas, N., OncodriveFML: a general framework to identify coding and non-coding regions with cancer driver mutations. Genome Biol., 17, 2016, 128.
    • (2016) Genome Biol. , vol.17 , pp. 128
    • Mularoni, L.1    Sabarinathan, R.2    Deu-Pons, J.3    Gonzalez-Perez, A.4    López-Bigas, N.5
  • 40
    • 0022507362 scopus 로고
    • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
    • Nei, M., Gojobori, T., Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 3 (1986), 418–426.
    • (1986) Mol. Biol. Evol. , vol.3 , pp. 418-426
    • Nei, M.1    Gojobori, T.2
  • 41
    • 0031972161 scopus 로고    scopus 로고
    • Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene
    • Nielsen, R., Yang, Z., Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene. Genetics 148 (1998), 929–936.
    • (1998) Genetics , vol.148 , pp. 929-936
    • Nielsen, R.1    Yang, Z.2
  • 43
    • 84908007911 scopus 로고
    • A new theory on cancer-inducing mechanism
    • Nordling, C.O., A new theory on cancer-inducing mechanism. Br. J. Cancer 7 (1953), 68–72.
    • (1953) Br. J. Cancer , vol.7 , pp. 68-72
    • Nordling, C.O.1
  • 44
    • 0017167185 scopus 로고
    • The clonal evolution of tumor cell populations
    • Nowell, P.C., The clonal evolution of tumor cell populations. Science 194 (1976), 23–28.
    • (1976) Science , vol.194 , pp. 23-28
    • Nowell, P.C.1
  • 45
    • 84897448471 scopus 로고    scopus 로고
    • Cancer evolution is associated with pervasive positive selection on globally expressed genes
    • Ostrow, S.L., Barshir, R., DeGregori, J., Yeger-Lotem, E., Hershberg, R., Cancer evolution is associated with pervasive positive selection on globally expressed genes. PLoS Genet., 10, 2014, e1004239.
    • (2014) PLoS Genet. , vol.10 , pp. e1004239
    • Ostrow, S.L.1    Barshir, R.2    DeGregori, J.3    Yeger-Lotem, E.4    Hershberg, R.5
  • 53
    • 84920962202 scopus 로고    scopus 로고
    • Molecular and genetic properties of tumors associated with local immune cytolytic activity
    • Rooney, M.S., Shukla, S.A., Wu, C.J., Getz, G., Hacohen, N., Molecular and genetic properties of tumors associated with local immune cytolytic activity. Cell 160 (2015), 48–61.
    • (2015) Cell , vol.160 , pp. 48-61
    • Rooney, M.S.1    Shukla, S.A.2    Wu, C.J.3    Getz, G.4    Hacohen, N.5
  • 55
    • 84865248380 scopus 로고    scopus 로고
    • Chromatin organization is a major influence on regional mutation rates in human cancer cells
    • Schuster-Böckler, B., Lehner, B., Chromatin organization is a major influence on regional mutation rates in human cancer cells. Nature 488 (2012), 504–507.
    • (2012) Nature , vol.488 , pp. 504-507
    • Schuster-Böckler, B.1    Lehner, B.2
  • 57
    • 84923989372 scopus 로고    scopus 로고
    • Combined hereditary and somatic mutations of replication error repair genes result in rapid onset of ultra-hypermutated cancers
    • Shlien, A., Campbell, B.B., de Borja, R., Alexandrov, L.B., Merico, D., Wedge, D., Van Loo, P., Tarpey, P.S., Coupland, P., Behjati, S., et al., Biallelic Mismatch Repair Deficiency Consortium. Combined hereditary and somatic mutations of replication error repair genes result in rapid onset of ultra-hypermutated cancers. Nat. Genet. 47 (2015), 257–262.
    • (2015) Nat. Genet. , vol.47 , pp. 257-262
    • Shlien, A.1    Campbell, B.B.2    de Borja, R.3    Alexandrov, L.B.4    Merico, D.5    Wedge, D.6    Van Loo, P.7    Tarpey, P.S.8    Coupland, P.9    Behjati, S.10
  • 59
    • 84896366070 scopus 로고    scopus 로고
    • Synonymous mutations frequently act as driver mutations in human cancers
    • Supek, F., Miñana, B., Valcárcel, J., Gabaldón, T., Lehner, B., Synonymous mutations frequently act as driver mutations in human cancers. Cell 156 (2014), 1324–1335.
    • (2014) Cell , vol.156 , pp. 1324-1335
    • Supek, F.1    Miñana, B.2    Valcárcel, J.3    Gabaldón, T.4    Lehner, B.5
  • 60
  • 61
    • 85007610416 scopus 로고    scopus 로고
    • Somatic mutation patterns in hemizygous genomic regions unveil purifying selection during tumor evolution
    • Van den Eynden, J., Basu, S., Larsson, E., Somatic mutation patterns in hemizygous genomic regions unveil purifying selection during tumor evolution. PLoS Genet., 12, 2016, e1006506.
    • (2016) PLoS Genet. , vol.12 , pp. e1006506
    • Van den Eynden, J.1    Basu, S.2    Larsson, E.3
  • 64
    • 35948984173 scopus 로고    scopus 로고
    • PennCNV: an integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data
    • Wang, K., Li, M., Hadley, D., Liu, R., Glessner, J., Grant, S.F., Hakonarson, H., Bucan, M., PennCNV: an integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data. Genome Res. 17 (2007), 1665–1674.
    • (2007) Genome Res. , vol.17 , pp. 1665-1674
    • Wang, K.1    Li, M.2    Hadley, D.3    Liu, R.4    Glessner, J.5    Grant, S.F.6    Hakonarson, H.7    Bucan, M.8
  • 68
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: phylogenetic analysis by maximum likelihood
    • Yang, Z., PAML 4: phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 24 (2007), 1586–1591.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 69
    • 0033639150 scopus 로고    scopus 로고
    • Statistical methods for detecting molecular adaptation
    • Yang, Z., Bielawski, J.P., Statistical methods for detecting molecular adaptation. Trends Ecol. Evol. 15 (2000), 496–503.
    • (2000) Trends Ecol. Evol. , vol.15 , pp. 496-503
    • Yang, Z.1    Bielawski, J.P.2
  • 70
    • 0033979433 scopus 로고    scopus 로고
    • Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models
    • Yang, Z., Nielsen, R., Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models. Mol. Biol. Evol. 17 (2000), 32–43.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 32-43
    • Yang, Z.1    Nielsen, R.2
  • 71
    • 0242318328 scopus 로고    scopus 로고
    • Likelihood models of somatic mutation and codon substitution in cancer genes
    • Yang, Z., Ro, S., Rannala, B., Likelihood models of somatic mutation and codon substitution in cancer genes. Genetics 165 (2003), 695–705.
    • (2003) Genetics , vol.165 , pp. 695-705
    • Yang, Z.1    Ro, S.2    Rannala, B.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.