-
1
-
-
80052014384
-
On the biological and genetic diversity in Neospora caninum
-
Al-Qassab, S.E., Reichel, M.P., Ellis, J.T., On the biological and genetic diversity in Neospora caninum. Diversity 2 (2010), 411–438.
-
(2010)
Diversity
, vol.2
, pp. 411-438
-
-
Al-Qassab, S.E.1
Reichel, M.P.2
Ellis, J.T.3
-
2
-
-
22244476152
-
Reduced infection and protection from clinical signs of cerebral neosporosis in C57BL/6 mice vaccinated with recombinant microneme antigen NcMIC1
-
Alaeddine, F., Keller, N., Leepin, A., Hemphill, A., Reduced infection and protection from clinical signs of cerebral neosporosis in C57BL/6 mice vaccinated with recombinant microneme antigen NcMIC1. J. Parasitol. 91 (2005), 657–665.
-
(2005)
J. Parasitol.
, vol.91
, pp. 657-665
-
-
Alaeddine, F.1
Keller, N.2
Leepin, A.3
Hemphill, A.4
-
3
-
-
77958471357
-
Differential expression analysis for sequence count data
-
Anders, S., Huber, W., Differential expression analysis for sequence count data. Genome Biol., 11(10), 2010, R106.
-
(2010)
Genome Biol.
, vol.11
, Issue.10
, pp. R106
-
-
Anders, S.1
Huber, W.2
-
4
-
-
18744392538
-
Immune responses during pregnancy in heifers naturally infected with Neospora caninum with and without immunization
-
Andrianarivo, A.G., Anderson, M.L., Rowe, J.D., Gardner, I.A., Reynolds, J.P., Choromanski, L., Conrad, P.A., Immune responses during pregnancy in heifers naturally infected with Neospora caninum with and without immunization. Parasitol. Res. 96 (2005), 24–31.
-
(2005)
Parasitol. Res.
, vol.96
, pp. 24-31
-
-
Andrianarivo, A.G.1
Anderson, M.L.2
Rowe, J.D.3
Gardner, I.A.4
Reynolds, J.P.5
Choromanski, L.6
Conrad, P.A.7
-
5
-
-
12244305592
-
Toxoplasma gondii-derived heat shock protein HSP70 functions as a B cell mitogen
-
Aosai, F., Chen, M., Kang, H.K., Mun, H.S., Norose, K., Piao, L.X., Kobayashi, M., Takeuchi, O., Akira, S., Yano, A., Toxoplasma gondii-derived heat shock protein HSP70 functions as a B cell mitogen. Cell Stress Chap. 7 (2002), 357–364.
-
(2002)
Cell Stress Chap.
, vol.7
, pp. 357-364
-
-
Aosai, F.1
Chen, M.2
Kang, H.K.3
Mun, H.S.4
Norose, K.5
Piao, L.X.6
Kobayashi, M.7
Takeuchi, O.8
Akira, S.9
Yano, A.10
-
6
-
-
9144232912
-
UniProt: the Universal Protein knowledgebase
-
Apweiler, R., Bairoch, A., Wu, C.H., Barker, W.C., Boeckmann, B., Ferro, S., Gasteiger, E., Huang, H.Z., Lopez, R., Magrane, M., Martin, M.J., Natale, D.A., O'Donovan, C., Redaschi, N., Yeh, L.S.L., UniProt: the Universal Protein knowledgebase. Nucleic Acids Res. 32 (2004), D115–D119.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. D115-D119
-
-
Apweiler, R.1
Bairoch, A.2
Wu, C.H.3
Barker, W.C.4
Boeckmann, B.5
Ferro, S.6
Gasteiger, E.7
Huang, H.Z.8
Lopez, R.9
Magrane, M.10
Martin, M.J.11
Natale, D.A.12
O'Donovan, C.13
Redaschi, N.14
Yeh, L.S.L.15
-
7
-
-
0034041033
-
Immunobiology of dendritic cells
-
Banchereau, J., Briere, F., Caux, C., Davoust, J., Lebecque, S., Liu, Y.T., Pulendran, B., Palucka, K., Immunobiology of dendritic cells. Annu. Rev. Immunol. 18 (2000), 767–811.
-
(2000)
Annu. Rev. Immunol.
, vol.18
, pp. 767-811
-
-
Banchereau, J.1
Briere, F.2
Caux, C.3
Davoust, J.4
Lebecque, S.5
Liu, Y.T.6
Pulendran, B.7
Palucka, K.8
-
8
-
-
0028004414
-
Intrinsic and extrinsic approaches for detecting genes in a bacterial genome
-
Borodovsky, M., Rudd, K.E., Koonin, E.V., Intrinsic and extrinsic approaches for detecting genes in a bacterial genome. Nucleic Acids Res. 22 (1994), 4756–4767.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4756-4767
-
-
Borodovsky, M.1
Rudd, K.E.2
Koonin, E.V.3
-
9
-
-
0035478854
-
Random forests
-
Breiman, L., Random forests. Mach. Learn. 45 (2001), 5–32.
-
(2001)
Mach. Learn.
, vol.45
, pp. 5-32
-
-
Breiman, L.1
-
10
-
-
34547782215
-
How does eukaryotic gene prediction work?
-
Brent, M.R., How does eukaryotic gene prediction work?. Nat. Biotechnol. 25 (2007), 883–885.
-
(2007)
Nat. Biotechnol.
, vol.25
, pp. 883-885
-
-
Brent, M.R.1
-
11
-
-
74049108922
-
BLAST+: architecture and applications
-
Camacho, C., Coulouris, G., Avagyan, V., Ma, N., Papadopoulos, J., Bealer, K., Madden, T.L., BLAST+: architecture and applications. BMC Bioinform., 10, 2009, 421.
-
(2009)
BMC Bioinform.
, vol.10
, pp. 421
-
-
Camacho, C.1
Coulouris, G.2
Avagyan, V.3
Ma, N.4
Papadopoulos, J.5
Bealer, K.6
Madden, T.L.7
-
12
-
-
0037396665
-
Vaccination of mice against experimental Neospora caninum infection using NcSAG1- and NcSRS2-based recombinant antigens and DNA vaccines
-
Cannas, A., Naguleswaran, A., Muller, N., Eperon, S., Gottstein, B., Hemphill, A., Vaccination of mice against experimental Neospora caninum infection using NcSAG1- and NcSRS2-based recombinant antigens and DNA vaccines. Parasitology 126 (2003), 303–312.
-
(2003)
Parasitology
, vol.126
, pp. 303-312
-
-
Cannas, A.1
Naguleswaran, A.2
Muller, N.3
Eperon, S.4
Gottstein, B.5
Hemphill, A.6
-
13
-
-
56349152375
-
In silico identification of specialized secretory-organelle proteins in apicomplexan parasites and in vivo validation in Toxoplasma gondii
-
Chen, Z., Harb, O.S., Roos, D.S., In silico identification of specialized secretory-organelle proteins in apicomplexan parasites and in vivo validation in Toxoplasma gondii. PLoS One, 3, 2008, e3611.
-
(2008)
PLoS One
, vol.3
, pp. e3611
-
-
Chen, Z.1
Harb, O.S.2
Roos, D.S.3
-
14
-
-
17844367149
-
Protective efficacy of vaccination with Neospora caninum multiple recombinant antigens against experimental Neospora caninum infection
-
Cho, J.-H., Chung, W.-S., Song, K.-J., Na, B.-K., Kang, S.-W., Song, C.-Y., Kim, T.-S., Protective efficacy of vaccination with Neospora caninum multiple recombinant antigens against experimental Neospora caninum infection. Korean J. Parasitol. 43 (2005), 19–25.
-
(2005)
Korean J. Parasitol.
, vol.43
, pp. 19-25
-
-
Cho, J.-H.1
Chung, W.-S.2
Song, K.-J.3
Na, B.-K.4
Kang, S.-W.5
Song, C.-Y.6
Kim, T.-S.7
-
15
-
-
84863964411
-
Identification and characterization of a novel Neospora caninum immune mapped protein 1
-
Cui, X., Lei, T., Yang, D.Y., Hao, P., Liu, Q., Identification and characterization of a novel Neospora caninum immune mapped protein 1. Parasitology 139 (2012), 998–1004.
-
(2012)
Parasitology
, vol.139
, pp. 998-1004
-
-
Cui, X.1
Lei, T.2
Yang, D.Y.3
Hao, P.4
Liu, Q.5
-
16
-
-
34247388467
-
Harnessing bioinformatics to discover new vaccines
-
Davies, M.N., Flower, D.R., Harnessing bioinformatics to discover new vaccines. Drug Discov. Today 12 (2007), 389–395.
-
(2007)
Drug Discov. Today
, vol.12
, pp. 389-395
-
-
Davies, M.N.1
Flower, D.R.2
-
17
-
-
77949653962
-
Intraperitoneal and intra-nasal vaccination of mice with three distinct recombinant Neospora caninum antigens results in differential effects with regard to protection against experimental challenge with Neospora caninum tachyzoites
-
Debache, K., Guionaud, C., Adaeddine, F., Hemphill, A., Intraperitoneal and intra-nasal vaccination of mice with three distinct recombinant Neospora caninum antigens results in differential effects with regard to protection against experimental challenge with Neospora caninum tachyzoites. Parasitology 137 (2010), 229–240.
-
(2010)
Parasitology
, vol.137
, pp. 229-240
-
-
Debache, K.1
Guionaud, C.2
Adaeddine, F.3
Hemphill, A.4
-
18
-
-
51249107767
-
Vaccination of mice with recombinant NcROP2 antigen reduces mortality and cerebral infection in mice infected with Neospora caninum tachyzoites
-
Debache, K., Guionaud, C., Alaeddine, F., Mevissen, M., Hemphill, A., Vaccination of mice with recombinant NcROP2 antigen reduces mortality and cerebral infection in mice infected with Neospora caninum tachyzoites. Int. J. Parasitol. 38 (2008), 1455–1463.
-
(2008)
Int. J. Parasitol.
, vol.38
, pp. 1455-1463
-
-
Debache, K.1
Guionaud, C.2
Alaeddine, F.3
Mevissen, M.4
Hemphill, A.5
-
19
-
-
2442666530
-
Toxoplasma gondii triggers myeloid differentiation factor 88-dependent IL-12 and chemokine ligand 2 (monocyte chemoattractant protein 1) responses using distinct parasite molecules and host receptors
-
Del Rio, L., Butcher, B.A., Bennouna, S., Hieny, S., Sher, A., Denkers, E.Y., Toxoplasma gondii triggers myeloid differentiation factor 88-dependent IL-12 and chemokine ligand 2 (monocyte chemoattractant protein 1) responses using distinct parasite molecules and host receptors. J. Immunol. 172 (2004), 6954–6960.
-
(2004)
J. Immunol.
, vol.172
, pp. 6954-6960
-
-
Del Rio, L.1
Butcher, B.A.2
Bennouna, S.3
Hieny, S.4
Sher, A.5
Denkers, E.Y.6
-
20
-
-
84878194846
-
Reverse vaccinology in the 21st century: improvements over the original design
-
Donati, C., Rappuoli, R., Reverse vaccinology in the 21st century: improvements over the original design. Year Immunol. 1285 (2013), 115–132.
-
(2013)
Year Immunol.
, vol.1285
, pp. 115-132
-
-
Donati, C.1
Rappuoli, R.2
-
21
-
-
79960306192
-
Neosporosis in animals-the last five years
-
Dubey, J.P., Schares, G., Neosporosis in animals-the last five years. Vet. Parasitol. 180 (2011), 90–108.
-
(2011)
Vet. Parasitol.
, vol.180
, pp. 90-108
-
-
Dubey, J.P.1
Schares, G.2
-
22
-
-
55049087149
-
Evaluation of recombinant proteins of Neospora caninum as vaccine candidates (in a mouse model)
-
Ellis, J., Miller, C., Quinn, H., Ryce, C., Reichel, M.P., Evaluation of recombinant proteins of Neospora caninum as vaccine candidates (in a mouse model). Vaccine 26 (2008), 5989–5996.
-
(2008)
Vaccine
, vol.26
, pp. 5989-5996
-
-
Ellis, J.1
Miller, C.2
Quinn, H.3
Ryce, C.4
Reichel, M.P.5
-
23
-
-
34248531753
-
Locating proteins in the cell using TargetP, SignalP and related tools
-
Emanuelsson, O., Brunak, S., von Heijne, G., Nielsen, H., Locating proteins in the cell using TargetP, SignalP and related tools. Nat. Protoc. 2 (2007), 953–971.
-
(2007)
Nat. Protoc.
, vol.2
, pp. 953-971
-
-
Emanuelsson, O.1
Brunak, S.2
von Heijne, G.3
Nielsen, H.4
-
24
-
-
0030218799
-
Finding genes by computer: the state of the art
-
Fickett, J.W., Finding genes by computer: the state of the art. Trends Genet. 12 (1996), 316–320.
-
(1996)
Trends Genet.
, vol.12
, pp. 316-320
-
-
Fickett, J.W.1
-
25
-
-
33845204804
-
Protozoan encounters with Toll-like receptor signalling pathways: implications for host parasitism
-
Gazzinelli, R.T., Denkers, E.Y., Protozoan encounters with Toll-like receptor signalling pathways: implications for host parasitism. Nat. Rev. Immunol. 6 (2006), 895–906.
-
(2006)
Nat. Rev. Immunol.
, vol.6
, pp. 895-906
-
-
Gazzinelli, R.T.1
Denkers, E.Y.2
-
26
-
-
84932198020
-
Improving the gene-structure annotation of the Apicomplexan parasite Neospora caninum fulfils a vital requirement towards an in silico derived vaccine
-
Goodswen, S., Barratt, J., Kennedy, P.J., Ellis, J.T., Improving the gene-structure annotation of the Apicomplexan parasite Neospora caninum fulfils a vital requirement towards an in silico derived vaccine. Int. J. Parasitol. 45 (2015), 305–318.
-
(2015)
Int. J. Parasitol.
, vol.45
, pp. 305-318
-
-
Goodswen, S.1
Barratt, J.2
Kennedy, P.J.3
Ellis, J.T.4
-
27
-
-
84886737285
-
A novel strategy for classifying the output from an in silico vaccine discovery pipeline for eukaryotic pathogens using machine learning algorithms
-
Goodswen, S., Kennedy, P., Ellis, J., A novel strategy for classifying the output from an in silico vaccine discovery pipeline for eukaryotic pathogens using machine learning algorithms. BMC Bioinform., 14, 2013, 315.
-
(2013)
BMC Bioinform.
, vol.14
, pp. 315
-
-
Goodswen, S.1
Kennedy, P.2
Ellis, J.3
-
28
-
-
84887669298
-
A guide to in silico vaccine discovery for eukaryotic pathogens
-
Goodswen, S.J., Kennedy, P.J., Ellis, J.T., A guide to in silico vaccine discovery for eukaryotic pathogens. Brief Bioinform. 14 (2013), 753–774.
-
(2013)
Brief Bioinform.
, vol.14
, pp. 753-774
-
-
Goodswen, S.J.1
Kennedy, P.J.2
Ellis, J.T.3
-
29
-
-
84870309144
-
A review of the infection, genetics, and evolution of Neospora caninum: from the past to the present
-
Goodswen, S.J., Kennedy, P.J., Ellis, J.T., A review of the infection, genetics, and evolution of Neospora caninum: from the past to the present. Infect. Genet. Evol. 13 (2013), 133–150.
-
(2013)
Infect. Genet. Evol.
, vol.13
, pp. 133-150
-
-
Goodswen, S.J.1
Kennedy, P.J.2
Ellis, J.T.3
-
30
-
-
84904725957
-
Discovering a vaccine against neosporosis using computers: is it feasible?
-
Goodswen, S.J., Kennedy, P.J., Ellis, J.T., Discovering a vaccine against neosporosis using computers: is it feasible?. Trends Parasitol. 30 (2014), 401–411.
-
(2014)
Trends Parasitol.
, vol.30
, pp. 401-411
-
-
Goodswen, S.J.1
Kennedy, P.J.2
Ellis, J.T.3
-
31
-
-
84920148723
-
Enhancing in silico protein-based vaccine discovery for eukaryotic pathogens using predicted peptide-MHC binding and peptide conservation scores
-
Goodswen, S.J., Kennedy, P.J., Ellis, J.T., Enhancing in silico protein-based vaccine discovery for eukaryotic pathogens using predicted peptide-MHC binding and peptide conservation scores. Plos One, 9, 2014.
-
(2014)
Plos One
, vol.9
-
-
Goodswen, S.J.1
Kennedy, P.J.2
Ellis, J.T.3
-
32
-
-
84904732727
-
Vacceed: a high-throughput in silico vaccine candidate discovery pipeline for eukaryotic pathogens based on reverse vaccinology
-
Goodswen, S.J., Kennedy, P.J., Ellis, J.T., Vacceed: a high-throughput in silico vaccine candidate discovery pipeline for eukaryotic pathogens based on reverse vaccinology. Bioinformatics 30 (2014), 2381–2383.
-
(2014)
Bioinformatics
, vol.30
, pp. 2381-2383
-
-
Goodswen, S.J.1
Kennedy, P.J.2
Ellis, J.T.3
-
33
-
-
33645979674
-
Using multiple alignments to improve gene prediction
-
Gross, S., Brent, M., Using multiple alignments to improve gene prediction. J. Comput. Biol. 13 (2006), 379–393.
-
(2006)
J. Comput. Biol.
, vol.13
, pp. 379-393
-
-
Gross, S.1
Brent, M.2
-
34
-
-
26944480044
-
Immunization with native surface protein NcSRS2 induces a Th2 immune response and reduces congenital Neospora caninum transmission in mice
-
Haldorson, G.J., Mathison, B.A., Wenberg, K., Conrad, P.A., Dubey, J.P., Trees, A.J., Yamane, I., Baszler, T.V., Immunization with native surface protein NcSRS2 induces a Th2 immune response and reduces congenital Neospora caninum transmission in mice. Int. J. Parasitol. 35 (2005), 1407–1415.
-
(2005)
Int. J. Parasitol.
, vol.35
, pp. 1407-1415
-
-
Haldorson, G.J.1
Mathison, B.A.2
Wenberg, K.3
Conrad, P.A.4
Dubey, J.P.5
Trees, A.J.6
Yamane, I.7
Baszler, T.V.8
-
35
-
-
84960809919
-
Approaches for the vaccination and treatment of Neospora caninum infections in mice and ruminant models
-
Hemphill, A., Aguado-Martinez, A., Muller, J., Approaches for the vaccination and treatment of Neospora caninum infections in mice and ruminant models. Parasitology 143 (2016), 245–259.
-
(2016)
Parasitology
, vol.143
, pp. 245-259
-
-
Hemphill, A.1
Aguado-Martinez, A.2
Muller, J.3
-
36
-
-
34547560275
-
WoLF PSORT: protein localization predictor
-
Horton, P., Park, K.-J., Obayashi, T., Fujita, N., Harada, H., Adams-Collier, C.J., Nakai, K., WoLF PSORT: protein localization predictor. Nucleic Acids Res. 35 (2007), W585–W587.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. W585-W587
-
-
Horton, P.1
Park, K.-J.2
Obayashi, T.3
Fujita, N.4
Harada, H.5
Adams-Collier, C.J.6
Nakai, K.7
-
37
-
-
1342281291
-
Inclusion of CpG adjuvant with plasmid DNA coding for NcGRA7 improves protection against congenital neosporosis
-
Jenkins, M., Parker, C., Tuo, W., Vinyard, B., Dubey, J.P., Inclusion of CpG adjuvant with plasmid DNA coding for NcGRA7 improves protection against congenital neosporosis. Infect. Immun. 72 (2004), 1817–1819.
-
(2004)
Infect. Immun.
, vol.72
, pp. 1817-1819
-
-
Jenkins, M.1
Parker, C.2
Tuo, W.3
Vinyard, B.4
Dubey, J.P.5
-
38
-
-
84863408501
-
Reverse vaccinology on the cusp
-
Jones, D., Reverse vaccinology on the cusp. Nat. Rev. Drug Discov. 11 (2012), 175–176.
-
(2012)
Nat. Rev. Drug Discov.
, vol.11
, pp. 175-176
-
-
Jones, D.1
-
39
-
-
2142657817
-
A combined transmembrane topology and signal peptide prediction method
-
Kall, L., Krogh, A., Sonnhammer, E.L.L., A combined transmembrane topology and signal peptide prediction method. J. Mol. Biol. 338 (2004), 1027–1036.
-
(2004)
J. Mol. Biol.
, vol.338
, pp. 1027-1036
-
-
Kall, L.1
Krogh, A.2
Sonnhammer, E.L.L.3
-
40
-
-
77951260924
-
The role of pattern-recognition receptors in innate immunity: update on Toll-like receptors
-
Kawai, T., Akira, S., The role of pattern-recognition receptors in innate immunity: update on Toll-like receptors. Nat. Immunol. 11 (2010), 373–384.
-
(2010)
Nat. Immunol.
, vol.11
, pp. 373-384
-
-
Kawai, T.1
Akira, S.2
-
41
-
-
0036226603
-
BLAT—the BLAST-like alignment tool
-
Kent, W.J., BLAT—the BLAST-like alignment tool. Genome Res. 12 (2002), 656–664.
-
(2002)
Genome Res.
, vol.12
, pp. 656-664
-
-
Kent, W.J.1
-
42
-
-
65549153845
-
C-type lectins and phagocytosis
-
Kerrigan, A.M., Brown, G.D., C-type lectins and phagocytosis. Immunobiology 214 (2009), 562–575.
-
(2009)
Immunobiology
, vol.214
, pp. 562-575
-
-
Kerrigan, A.M.1
Brown, G.D.2
-
43
-
-
0035910270
-
Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes
-
Krogh, A., Larsson, B., von Heijne, G., Sonnhammer, E.L.L., Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 305 (2001), 567–580.
-
(2001)
J. Mol. Biol.
, vol.305
, pp. 567-580
-
-
Krogh, A.1
Larsson, B.2
von Heijne, G.3
Sonnhammer, E.L.L.4
-
44
-
-
84876263777
-
EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments
-
Leng, N., Dawson, J.A., Thomson, J.A., Ruotti, V., Rissman, A.I., Smits, B.M.G., Haag, J.D., Gould, M.N., Stewart, R.M., Kendziorski, C., EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments. Bioinformatics 29 (2013), 1035–1043.
-
(2013)
Bioinformatics
, vol.29
, pp. 1035-1043
-
-
Leng, N.1
Dawson, J.A.2
Thomson, J.A.3
Ruotti, V.4
Rissman, A.I.5
Smits, B.M.G.6
Haag, J.D.7
Gould, M.N.8
Stewart, R.M.9
Kendziorski, C.10
-
45
-
-
84864483625
-
RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics
-
Lohse, M., Bolger, A.M., Nagel, A., Fernie, A.R., Lunn, J.E., Stitt, M., Usadel, B., RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics. Nucleic Acids Res. 40 (2012), W622–W627.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. W622-W627
-
-
Lohse, M.1
Bolger, A.M.2
Nagel, A.3
Fernie, A.R.4
Lunn, J.E.5
Stitt, M.6
Usadel, B.7
-
46
-
-
8844252293
-
TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders
-
Majoros, W.H., Pertea, M., Salzberg, S.L., TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders. Bioinformatics 20 (2004), 2878–2879.
-
(2004)
Bioinformatics
, vol.20
, pp. 2878-2879
-
-
Majoros, W.H.1
Pertea, M.2
Salzberg, S.L.3
-
47
-
-
84899123083
-
Vaccines against neosporosis: What can we learn from the past studies?
-
Monney, T., Hemphill, A., Vaccines against neosporosis: What can we learn from the past studies?. Exp. Parasitol. 140 (2014), 52–70.
-
(2014)
Exp. Parasitol.
, vol.140
, pp. 52-70
-
-
Monney, T.1
Hemphill, A.2
-
48
-
-
78149354807
-
NetMHCIIpan-2.0 – improved pan-specific HLA-DR predictions using a novel concurrent alignment and weight optimization training procedure
-
Nielsen, M., Justesen, S., Lund, O., Lundegaard, C., Buus, S., NetMHCIIpan-2.0 – improved pan-specific HLA-DR predictions using a novel concurrent alignment and weight optimization training procedure. Immunome Res., 6, 2010, 9.
-
(2010)
Immunome Res.
, vol.6
, pp. 9
-
-
Nielsen, M.1
Justesen, S.2
Lund, O.3
Lundegaard, C.4
Buus, S.5
-
49
-
-
85011703163
-
The genome of the protozoan parasite Cystoisospora suis and a reverse vaccinology approach to identify vaccine candidates
-
Palmieri, N., Shrestha, A., Ruttkowski, B., Beck, T., Vogl, C., Tomley, F., Blake, D.P., Joachim, A., The genome of the protozoan parasite Cystoisospora suis and a reverse vaccinology approach to identify vaccine candidates. Int. J. Parasitol. 47 (2017), 189–202.
-
(2017)
Int. J. Parasitol.
, vol.47
, pp. 189-202
-
-
Palmieri, N.1
Shrestha, A.2
Ruttkowski, B.3
Beck, T.4
Vogl, C.5
Tomley, F.6
Blake, D.P.7
Joachim, A.8
-
50
-
-
54049089560
-
Using GlimmerM to find genes in eukaryotic genomes
-
00:4.4:4.4.1–4.4.20
-
Pertea, M., Salzberg, S.L., Using GlimmerM to find genes in eukaryotic genomes. Curr. Protoc. Bioinformatics, 2002 00:4.4:4.4.1–4.4.20.
-
(2002)
Curr. Protoc. Bioinformatics
-
-
Pertea, M.1
Salzberg, S.L.2
-
51
-
-
80053345905
-
SignalP 4.0: discriminating signal peptides from transmembrane regions
-
Petersen, T.N., Brunak, S., von Heijne, G., Nielsen, H., SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat. Methods 8 (2011), 785–786.
-
(2011)
Nat. Methods
, vol.8
, pp. 785-786
-
-
Petersen, T.N.1
Brunak, S.2
von Heijne, G.3
Nielsen, H.4
-
52
-
-
34147188155
-
Immunogenicity and protective effect against murine cerebral neosporosis of recombinant NcSRS2 in different iscom formulations
-
Pinitkiatisakul, S., Friedman, M., Wikman, M., Mattsson, J.G., Lovgren-Bengtsson, K., Stahl, S., Lunden, A., Immunogenicity and protective effect against murine cerebral neosporosis of recombinant NcSRS2 in different iscom formulations. Vaccine 25 (2007), 3658–3668.
-
(2007)
Vaccine
, vol.25
, pp. 3658-3668
-
-
Pinitkiatisakul, S.1
Friedman, M.2
Wikman, M.3
Mattsson, J.G.4
Lovgren-Bengtsson, K.5
Stahl, S.6
Lunden, A.7
-
53
-
-
38849095132
-
Toxoplasma profilin is essential for host cell invasion and TLR11-dependent induction of an interleukin-12 response
-
Plattner, F., Yarovinsky, F., Romero, S., Didry, D., Carlier, M.-F., Sher, A., Soldati-Favre, D., Toxoplasma profilin is essential for host cell invasion and TLR11-dependent induction of an interleukin-12 response. Cell Host Microbe 3 (2008), 77–87.
-
(2008)
Cell Host Microbe
, vol.3
, pp. 77-87
-
-
Plattner, F.1
Yarovinsky, F.2
Romero, S.3
Didry, D.4
Carlier, M.-F.5
Sher, A.6
Soldati-Favre, D.7
-
54
-
-
34548678210
-
Prevention of vertical transmission of Neospora caninum in C57BL/6 mice vaccinated with Brucella abortus strain RB51 expressing N-caninum protective antigens
-
Ramamoorthy, S., Sanakkayala, N., Vemulapalli, R., Jain, N., Lindsay, D.S., Schurig, G.S., Boyle, S.M., Sriranganathan, N., Prevention of vertical transmission of Neospora caninum in C57BL/6 mice vaccinated with Brucella abortus strain RB51 expressing N-caninum protective antigens. Int. J. Parasitol. 37 (2007), 1531–1538.
-
(2007)
Int. J. Parasitol.
, vol.37
, pp. 1531-1538
-
-
Ramamoorthy, S.1
Sanakkayala, N.2
Vemulapalli, R.3
Jain, N.4
Lindsay, D.S.5
Schurig, G.S.6
Boyle, S.M.7
Sriranganathan, N.8
-
56
-
-
84873140040
-
What is the global economic impact of Neospora caninum in cattle - the billion dollar question
-
Reichel, M.P., Alejandra Ayanegui-Alcerreca, M., Gondim, L.F.P., Ellis, J.T., What is the global economic impact of Neospora caninum in cattle - the billion dollar question. Int. J. Parasitol. 43 (2013), 133–142.
-
(2013)
Int. J. Parasitol.
, vol.43
, pp. 133-142
-
-
Reichel, M.P.1
Alejandra Ayanegui-Alcerreca, M.2
Gondim, L.F.P.3
Ellis, J.T.4
-
57
-
-
84861207409
-
Comparative genomics of the Apicomplexan parasites Toxoplasma gondii and Neospora caninum: coccidia differing in host range and transmission strategy
-
Reid, A.J., Vermont, S.J., Cotton, J.A., Harris, D., Hill-Cawthorne, G.A., Könen-Waisman, S., Latham, S.M., Mourier, T., Norton, R., Quail, M.A., Sanders, M., Shanmugam, D., Sohal, A., Wasmuth, J.D., Brunk, B., Grigg, M.E., Howard, J.C., Parkinson, J., Roos, D.S., Trees, A.J., Berriman, M., Pain, A., Wastling, J.M., Comparative genomics of the Apicomplexan parasites Toxoplasma gondii and Neospora caninum: coccidia differing in host range and transmission strategy. PLoS Pathog., 8, 2012, e1002567.
-
(2012)
PLoS Pathog.
, vol.8
, pp. e1002567
-
-
Reid, A.J.1
Vermont, S.J.2
Cotton, J.A.3
Harris, D.4
Hill-Cawthorne, G.A.5
Könen-Waisman, S.6
Latham, S.M.7
Mourier, T.8
Norton, R.9
Quail, M.A.10
Sanders, M.11
Shanmugam, D.12
Sohal, A.13
Wasmuth, J.D.14
Brunk, B.15
Grigg, M.E.16
Howard, J.C.17
Parkinson, J.18
Roos, D.S.19
Trees, A.J.20
Berriman, M.21
Pain, A.22
Wastling, J.M.23
more..
-
58
-
-
21644467683
-
Themes and variations in apicomplexan parasite biology
-
Roos, D.S., Themes and variations in apicomplexan parasite biology. Science 309 (2005), 72–73.
-
(2005)
Science
, vol.309
, pp. 72-73
-
-
Roos, D.S.1
-
59
-
-
46249103012
-
Upregulation of cytokines is detected in the placentas of cattle infected with Neospora caninum and is more marked early in gestation when fetal death is observed
-
Rosbottom, A., Gibney, E.H., Guy, C.S., Kipar, A., Smith, R.F., Kaiser, P., Trees, A.J., Williams, D.J.L., Upregulation of cytokines is detected in the placentas of cattle infected with Neospora caninum and is more marked early in gestation when fetal death is observed. Infect. Immun. 76 (2008), 2352–2361.
-
(2008)
Infect. Immun.
, vol.76
, pp. 2352-2361
-
-
Rosbottom, A.1
Gibney, E.H.2
Guy, C.S.3
Kipar, A.4
Smith, R.F.5
Kaiser, P.6
Trees, A.J.7
Williams, D.J.L.8
-
60
-
-
76249124614
-
Diversity and evolution of 11 innate immune genes in Bos taurus taurus and Bos taurus indicus cattle
-
Seabury, C.M., Seabury, P.M., Decker, J.E., Schnabel, R.D., Taylor, J.F., Womack, J.E., Diversity and evolution of 11 innate immune genes in Bos taurus taurus and Bos taurus indicus cattle. Proc. Nat. Acad. Sci. USA 107 (2010), 151–156.
-
(2010)
Proc. Nat. Acad. Sci. USA
, vol.107
, pp. 151-156
-
-
Seabury, C.M.1
Seabury, P.M.2
Decker, J.E.3
Schnabel, R.D.4
Taylor, J.F.5
Womack, J.E.6
-
61
-
-
77954818578
-
An overview of the current status of eukaryote gene prediction strategies
-
Sleator, R.D., An overview of the current status of eukaryote gene prediction strategies. Gene 461 (2010), 1–4.
-
(2010)
Gene
, vol.461
, pp. 1-4
-
-
Sleator, R.D.1
-
62
-
-
3242889577
-
AUGUSTUS: a web server for gene finding in eukaryotes
-
Stanke, M., Steinkamp, R., Waack, S., Morgenstern, B., AUGUSTUS: a web server for gene finding in eukaryotes. Nucleic Acids Res. 32 (2004), W309–W312.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. W309-W312
-
-
Stanke, M.1
Steinkamp, R.2
Waack, S.3
Morgenstern, B.4
-
63
-
-
33748674197
-
AUGUSTUS at EGASP: using EST, protein and genomic alignments for improved gene prediction in the human genome
-
Stanke, M., Tzvetkova, A., Morgenstern, B., AUGUSTUS at EGASP: using EST, protein and genomic alignments for improved gene prediction in the human genome. Geneome Biol., 7, 2006, S11.
-
(2006)
Geneome Biol.
, vol.7
, pp. S11
-
-
Stanke, M.1
Tzvetkova, A.2
Morgenstern, B.3
-
64
-
-
34347388470
-
UniRef: comprehensive and non-redundant UniProt reference clusters
-
Suzek, B.E., Huang, H., McGarvey, P., Mazumder, R., Wu, C.H., UniRef: comprehensive and non-redundant UniProt reference clusters. Bioinformatics 23 (2007), 1282–1288.
-
(2007)
Bioinformatics
, vol.23
, pp. 1282-1288
-
-
Suzek, B.E.1
Huang, H.2
McGarvey, P.3
Mazumder, R.4
Wu, C.H.5
-
65
-
-
77952545400
-
Identification of T-gondii epitopes, adjuvants, and host genetic factors that influence protection of mice and humans
-
Tan, T.G., Mui, E., Cong, H., Witola, W.H., Montpetit, A., Muench, S.P., Sidney, J., Alexander, J., Sette, A., Grigg, M.E., Maewal, A., McLeod, R., Identification of T-gondii epitopes, adjuvants, and host genetic factors that influence protection of mice and humans. Vaccine 28 (2010), 3977–3989.
-
(2010)
Vaccine
, vol.28
, pp. 3977-3989
-
-
Tan, T.G.1
Mui, E.2
Cong, H.3
Witola, W.H.4
Montpetit, A.5
Muench, S.P.6
Sidney, J.7
Alexander, J.8
Sette, A.9
Grigg, M.E.10
Maewal, A.11
McLeod, R.12
-
66
-
-
84872198346
-
Differential analysis of gene regulation at transcript resolution with RNA-seq
-
Trapnell, C., Hendrickson, D.G., Sauvageau, M., Goff, L., Rinn, J.L., Pachter, L., Differential analysis of gene regulation at transcript resolution with RNA-seq. Nat. Biotechnol. 31 (2013), 46–53.
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 46-53
-
-
Trapnell, C.1
Hendrickson, D.G.2
Sauvageau, M.3
Goff, L.4
Rinn, J.L.5
Pachter, L.6
-
67
-
-
84859885816
-
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
-
Trapnell, C., Roberts, A., Goff, L., Pertea, G., Kim, D., Kelley, D.R., Pimentel, H., Salzberg, S.L., Rinn, J.L., Pachter, L., Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat. Protoc. 7 (2012), 562–578.
-
(2012)
Nat. Protoc.
, vol.7
, pp. 562-578
-
-
Trapnell, C.1
Roberts, A.2
Goff, L.3
Pertea, G.4
Kim, D.5
Kelley, D.R.6
Pimentel, H.7
Salzberg, S.L.8
Rinn, J.L.9
Pachter, L.10
-
68
-
-
79952362185
-
Immunization of female BALB/c mice with Neospora cyclophilin and/or NcSRS2 elicits specific antibody response and prevents against challenge infection by Neospora caninum
-
Tuo, W., Zhao, Y., Zhu, D., Jenkins, M.C., Immunization of female BALB/c mice with Neospora cyclophilin and/or NcSRS2 elicits specific antibody response and prevents against challenge infection by Neospora caninum. Vaccine 29 (2011), 2392–2399.
-
(2011)
Vaccine
, vol.29
, pp. 2392-2399
-
-
Tuo, W.1
Zhao, Y.2
Zhu, D.3
Jenkins, M.C.4
-
69
-
-
84878359303
-
Comparative study of protective activities of Neospora caninum bradyzoite antigens, NcBAG1, NcBSR4, NcMAG1, and NcSAG4, in a mouse model of acute parasitic infection
-
Uchida, M., Nagashima, K., Akatsuka, Y., Murakami, T., Ito, A., Imai, S., Ike, K., Comparative study of protective activities of Neospora caninum bradyzoite antigens, NcBAG1, NcBSR4, NcMAG1, and NcSAG4, in a mouse model of acute parasitic infection. Parasitol. Res. 112 (2013), 655–663.
-
(2013)
Parasitol. Res.
, vol.112
, pp. 655-663
-
-
Uchida, M.1
Nagashima, K.2
Akatsuka, Y.3
Murakami, T.4
Ito, A.5
Imai, S.6
Ike, K.7
-
70
-
-
43349093149
-
Using N-SCAN or TWINSCAN to predict gene structures in genomic DNA sequences
-
20:4.8:4.8.1–4.8.16
-
van Baren, M.J., Koebbe, B.C., Brent, M.R., Using N-SCAN or TWINSCAN to predict gene structures in genomic DNA sequences. Curr. Protoc. Bioinformatics, 2007 20:4.8:4.8.1–4.8.16.
-
(2007)
Curr. Protoc. Bioinformatics
-
-
van Baren, M.J.1
Koebbe, B.C.2
Brent, M.R.3
-
71
-
-
33847760357
-
Immunization of cattle with live tachyzoites of Neospora caninum confers protection against fetal death
-
Williams, D.J.L., Guy, C.S., Smith, R.F., Ellis, J., Bjorkman, C., Reichel, M.P., Trees, A.J., Immunization of cattle with live tachyzoites of Neospora caninum confers protection against fetal death. Infect. Immun. 75 (2007), 1343–1348.
-
(2007)
Infect. Immun.
, vol.75
, pp. 1343-1348
-
-
Williams, D.J.L.1
Guy, C.S.2
Smith, R.F.3
Ellis, J.4
Bjorkman, C.5
Reichel, M.P.6
Trees, A.J.7
-
72
-
-
18744383071
-
GMAP: a genomic mapping and alignment program for mRNA and EST sequences
-
Wu, T., Watanabe, C., GMAP: a genomic mapping and alignment program for mRNA and EST sequences. Bioinformatics 21 (2005), 1859–1875.
-
(2005)
Bioinformatics
, vol.21
, pp. 1859-1875
-
-
Wu, T.1
Watanabe, C.2
-
73
-
-
20644433342
-
TLR11 activation of dendritic cells by a protozoan profilin-like protein
-
Yarovinsky, F., Zhang, D., Andersen, J.F., Bannenberg, G.L., Serhan, C.N., Hayden, M.S., Hieny, S., Sutterwala, F.S., Flavell, R.A., Ghosh, S., Sher, A., TLR11 activation of dendritic cells by a protozoan profilin-like protein. Science 308 (2005), 1626–1629.
-
(2005)
Science
, vol.308
, pp. 1626-1629
-
-
Yarovinsky, F.1
Zhang, D.2
Andersen, J.F.3
Bannenberg, G.L.4
Serhan, C.N.5
Hayden, M.S.6
Hieny, S.7
Sutterwala, F.S.8
Flavell, R.A.9
Ghosh, S.10
Sher, A.11
|