-
1
-
-
77951621301
-
-
Elsik CG, et al.; Bovine Genome Sequencing and Analysis Consortium (2009) The genome sequence of taurine cattle: a window to ruminant biology and evolution. Science 324:522-528.
-
Elsik CG, et al.; Bovine Genome Sequencing and Analysis Consortium (2009) The genome sequence of taurine cattle: a window to ruminant biology and evolution. Science 324:522-528.
-
-
-
-
2
-
-
65449132092
-
Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds
-
Bovine HAPMAP Consortium
-
Bovine HAPMAP Consortium (2009) Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds. Science 324:528-532.
-
(2009)
Science
, vol.324
, pp. 528-532
-
-
-
3
-
-
58349092764
-
Invited review: Reliability of genomic predictions for North American Holstein bulls
-
VanRaden PM, et al. (2009) Invited review: reliability of genomic predictions for North American Holstein bulls. J Dairy Sci 92:16-24.
-
(2009)
J Dairy Sci
, vol.92
, pp. 16-24
-
-
VanRaden, P.M.1
-
4
-
-
33845468169
-
Tweaking innate immunity: The promise of innate immunologicals as anti-infectives
-
Rosenthal KL (2006) Tweaking innate immunity: The promise of innate immunologicals as anti-infectives. Can J Infect Dis Med Microbiol 17:307-314.
-
(2006)
Can J Infect Dis Med Microbiol
, vol.17
, pp. 307-314
-
-
Rosenthal, K.L.1
-
5
-
-
0036178063
-
Toll receptors: A central element in innate immune responses
-
Vasselon T, Detmers PA (2002) Toll receptors: a central element in innate immune responses. Infect Immun 70:1033-1041.
-
(2002)
Infect Immun
, vol.70
, pp. 1033-1041
-
-
Vasselon, T.1
Detmers, P.A.2
-
6
-
-
33646147362
-
Toll-like receptor function and signaling
-
quiz 988
-
Kaisho T, Akira S (2006) Toll-like receptor function and signaling. J Allergy Clin Immunol 117:979-987. quiz 988.
-
(2006)
J Allergy Clin Immunol
, vol.117
, pp. 979-987
-
-
Kaisho, T.1
Akira, S.2
-
7
-
-
0025803877
-
The polarity of the dorsoventral axis in the Drosophila embryo is defined by an extracellular signal
-
Stein D, Roth S, Vogelsang E, Nüsslein-Volhard C (1991) The polarity of the dorsoventral axis in the Drosophila embryo is defined by an extracellular signal. Cell 65:725-735.
-
(1991)
Cell
, vol.65
, pp. 725-735
-
-
Stein, D.1
Roth, S.2
Vogelsang, E.3
Nüsslein-Volhard, C.4
-
8
-
-
0030595339
-
The dorsoventral regulatory gene cassette spätzle/Toll/cactus controls the potent antifungal response in Drosophila adults
-
Lemaitre B, Nicolas E, Michaut L, Reichhart JM, Hoffmann JA (1996) The dorsoventral regulatory gene cassette spätzle/Toll/cactus controls the potent antifungal response in Drosophila adults. Cell 86:973-983.
-
(1996)
Cell
, vol.86
, pp. 973-983
-
-
Lemaitre, B.1
Nicolas, E.2
Michaut, L.3
Reichhart, J.M.4
Hoffmann, J.A.5
-
9
-
-
0034641738
-
Toll-related receptors and the control of antimicrobial peptide expression in Drosophila
-
Tauszig S, Jouanguy E, Hoffmann JA, Imler J-L (2000) Toll-related receptors and the control of antimicrobial peptide expression in Drosophila. Proc Natl Acad Sci USA 97: 10520-10525.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 10520-10525
-
-
Tauszig, S.1
Jouanguy, E.2
Hoffmann, J.A.3
Imler, J.-L.4
-
10
-
-
3142654210
-
Inferences, questions and possibilities in Toll-like receptor signalling
-
Beutler B (2004) Inferences, questions and possibilities in Toll-like receptor signalling. Nature 430:257-263.
-
(2004)
Nature
, vol.430
, pp. 257-263
-
-
Beutler, B.1
-
11
-
-
3142724031
-
Toll-like receptor signalling
-
Akira S, Takeda K (2004) Toll-like receptor signalling. Nat Rev Immunol 4:499-511.
-
(2004)
Nat Rev Immunol
, vol.4
, pp. 499-511
-
-
Akira, S.1
Takeda, K.2
-
12
-
-
33644887717
-
Radiation hybrid mapping of all 10 characterized bovine Tolllike receptors
-
McGuire K, et al. (2005) Radiation hybrid mapping of all 10 characterized bovine Tolllike receptors. Anim Genet 37:47-50.
-
(2005)
Anim Genet
, vol.37
, pp. 47-50
-
-
McGuire, K.1
-
13
-
-
0347128294
-
Mastitis increases mammary mRNA abundance of betadefensin 5, toll-like-receptor 2 (TLR2), and TLR4 but not TLR9 in cattle
-
Goldammer T, et al. (2004) Mastitis increases mammary mRNA abundance of betadefensin 5, toll-like-receptor 2 (TLR2), and TLR4 but not TLR9 in cattle. Clin Diagn Lab Immunol 11:174-185.
-
(2004)
Clin Diagn Lab Immunol
, vol.11
, pp. 174-185
-
-
Goldammer, T.1
-
14
-
-
0037328981
-
Comparative fine maps of bovine Toll-like receptor 4 and Toll-like receptor 2 regions
-
White SN, Kata SR, Womack JE (2003) Comparative fine maps of bovine Toll-like receptor 4 and Toll-like receptor 2 regions. Mamm Genome 14:149-155.
-
(2003)
Mamm Genome
, vol.14
, pp. 149-155
-
-
White, S.N.1
Kata, S.R.2
Womack, J.E.3
-
16
-
-
20044368019
-
Human TLR10 is a functional receptor, expressed by B cells and plasmacytoid dendritic cells, which activates gene transcription through MyD88
-
Hasan U, et al. (2005) Human TLR10 is a functional receptor, expressed by B cells and plasmacytoid dendritic cells, which activates gene transcription through MyD88. J Immunol 174:2942-2950.
-
(2005)
J Immunol
, vol.174
, pp. 2942-2950
-
-
Hasan, U.1
-
17
-
-
0034610291
-
The repertoire for pattern recognition of pathogens by the innate immune system is defined by cooperation between Toll-like receptors
-
Ozinsky A, et al. (2000) The repertoire for pattern recognition of pathogens by the innate immune system is defined by cooperation between Toll-like receptors. Proc Natl Acad Sci USA 97:13766-13771.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 13766-13771
-
-
Ozinsky, A.1
-
18
-
-
4043115490
-
The potential for Toll-like receptors to collaborate with other innate immune receptors
-
Mukhopadhyay S, Herre J, Brown GD, Gordon S (2004) The potential for Toll-like receptors to collaborate with other innate immune receptors. Immunology 112:521-530.
-
(2004)
Immunology
, vol.112
, pp. 521-530
-
-
Mukhopadhyay, S.1
Herre, J.2
Brown, G.D.3
Gordon, S.4
-
19
-
-
30744475689
-
Bovine peptidoglycan recognition protein-S: Antimicrobial activity, localization, secretion, and binding properties
-
Tydell CC, Yuan J, Tran P, Selsted ME (2006) Bovine peptidoglycan recognition protein-S: antimicrobial activity, localization, secretion, and binding properties. J Immunol 176:1154-1162.
-
(2006)
J Immunol
, vol.176
, pp. 1154-1162
-
-
Tydell, C.C.1
Yuan, J.2
Tran, P.3
Selsted, M.E.4
-
20
-
-
33847357075
-
Human peptidoglycan recognition proteins require zinc to kill both gram-positive and gram-negative bacteria and are synergistic with antibacterial peptides
-
Wang M, et al. (2007) Human peptidoglycan recognition proteins require zinc to kill both gram-positive and gram-negative bacteria and are synergistic with antibacterial peptides. J Immunol 178:3116-3125.
-
(2007)
J Immunol
, vol.178
, pp. 3116-3125
-
-
Wang, M.1
-
21
-
-
0037757622
-
A mammalian peptidoglycan recognition protein with N-acetylmuramoyl-L-alanine amidase activity
-
Gelius E, Persson C, Karlsson J, Steiner H (2003) A mammalian peptidoglycan recognition protein with N-acetylmuramoyl-L-alanine amidase activity. Biochem Biophys Res Commun 306:988-994.
-
(2003)
Biochem Biophys Res Commun
, vol.306
, pp. 988-994
-
-
Gelius, E.1
Persson, C.2
Karlsson, J.3
Steiner, H.4
-
22
-
-
33646850266
-
Peptidoglycan recognition proteins are a new class of human bactericidal proteins
-
Lu X, et al. (2006) Peptidoglycan recognition proteins are a new class of human bactericidal proteins. J Biol Chem 281:5895-5907.
-
(2006)
J Biol Chem
, vol.281
, pp. 5895-5907
-
-
Lu, X.1
-
23
-
-
33746637209
-
Characterization and functional investigation of single nucleotide polymorphisms (SNPs) in the human TLR5 gene
-
Merx S, Zimmer W, Neumaier M, Ahmad-Nejad P (2006) Characterization and functional investigation of single nucleotide polymorphisms (SNPs) in the human TLR5 gene. Hum Mutat 27:293.
-
(2006)
Hum Mutat
, vol.27
, pp. 293
-
-
Merx, S.1
Zimmer, W.2
Neumaier, M.3
Ahmad-Nejad, P.4
-
24
-
-
27744471914
-
The importance of Toll-like receptor 2 polymorphisms in severe infections
-
Texereau J, et al. (2005) The importance of Toll-like receptor 2 polymorphisms in severe infections. Clin Infect Dis 41 (Suppl 7):S408-S415.
-
(2005)
Clin Infect Dis
, vol.41
, Issue.SUPPL. 7
-
-
Texereau, J.1
-
25
-
-
61549134538
-
Toll-like receptors TLR1, TLR2 and TLR4 gene mutations and natural resistance to Mycobacterium avium subsp. paratuberculosis infection in cattle
-
Mucha R, Bhide MR, Chakurkar EB, Novak M, Mikula I, Sr (2009) Toll-like receptors TLR1, TLR2 and TLR4 gene mutations and natural resistance to Mycobacterium avium subsp. paratuberculosis infection in cattle. Vet Immunol Immunopathol 128:381-388.
-
(2009)
Vet Immunol Immunopathol
, vol.128
, pp. 381-388
-
-
Mucha, R.1
Bhide, M.R.2
Chakurkar, E.B.3
Novak, M.4
Mikula Sr, I.5
-
26
-
-
67650377027
-
Novel mutations in TLR genes cause hyporesponsiveness to Mycobacterium avium subsp. paratuberculosis infection
-
Bhide MR, et al. (2009) Novel mutations in TLR genes cause hyporesponsiveness to Mycobacterium avium subsp. paratuberculosis infection. BMC Genet 10:21.
-
(2009)
BMC Genet
, vol.10
, pp. 21
-
-
Bhide, M.R.1
-
27
-
-
34248181060
-
Detection of polymorphisms in bovine Toll-like receptors 3, 7, 8, and 9
-
Cargill EJ, Womack JE (2007) Detection of polymorphisms in bovine Toll-like receptors 3, 7, 8, and 9. Genomics 89:745-755.
-
(2007)
Genomics
, vol.89
, pp. 745-755
-
-
Cargill, E.J.1
Womack, J.E.2
-
28
-
-
34548618251
-
Sequence variability and protein domain architectures for bovine Toll-like receptors 1, 5, and 10
-
Seabury CM, Cargill EJ, Womack JE (2007) Sequence variability and protein domain architectures for bovine Toll-like receptors 1, 5, and 10. Genomics 90:502-515.
-
(2007)
Genomics
, vol.90
, pp. 502-515
-
-
Seabury, C.M.1
Cargill, E.J.2
Womack, J.E.3
-
29
-
-
51649118001
-
Analysis of sequence variability and protein domain architectures for bovine peptidoglycan recognition protein 1 and Toll-like receptors 2 and 6
-
Seabury CM, Womack JE (2008) Analysis of sequence variability and protein domain architectures for bovine peptidoglycan recognition protein 1 and Toll-like receptors 2 and 6. Genomics 92:235-245.
-
(2008)
Genomics
, vol.92
, pp. 235-245
-
-
Seabury, C.M.1
Womack, J.E.2
-
30
-
-
4043162145
-
Quantitative trait loci mapping of functional traits in the German Holstein cattle population
-
Kühn Ch, et al. (2003) Quantitative trait loci mapping of functional traits in the German Holstein cattle population. J Dairy Sci 86:360-368.
-
(2003)
J Dairy Sci
, vol.86
, pp. 360-368
-
-
Kühn, C.1
-
31
-
-
0033547259
-
A genome scan for QTL influencing milk production and health traits in dairy cattle
-
Heyen DW, et al. (1999) A genome scan for QTL influencing milk production and health traits in dairy cattle. Physiol Genomics 1:165-175.
-
(1999)
Physiol Genomics
, vol.1
, pp. 165-175
-
-
Heyen, D.W.1
-
32
-
-
40149098690
-
SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries
-
Van Tassell CP, et al. (2008) SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries. Nat Methods 5:247-252.
-
(2008)
Nat Methods
, vol.5
, pp. 247-252
-
-
Van Tassell, C.P.1
-
33
-
-
0042838312
-
Haplotype variation in bovine Toll-like receptor 4 and computational prediction of a positively selected ligand-binding domain
-
White SN, Taylor KH, Abbey CA, Gill CA, Womack JE (2003) Haplotype variation in bovine Toll-like receptor 4 and computational prediction of a positively selected ligand-binding domain. Proc Natl Acad Sci USA 100:10364-10369.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 10364-10369
-
-
White, S.N.1
Taylor, K.H.2
Abbey, C.A.3
Gill, C.A.4
Womack, J.E.5
-
34
-
-
0032900678
-
Median-joining networks for inferring intraspecific phylogenies
-
Bandelt HJ, Forster P, Röhl A (1999) Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol 16:37-48.
-
(1999)
Mol Biol Evol
, vol.16
, pp. 37-48
-
-
Bandelt, H.J.1
Forster, P.2
Röhl, A.3
-
35
-
-
0035071957
-
A new statistical method for haplotype reconstruction from population data
-
Stephens M, Smith NJ, Donnelly P (2001) A new statistical method for haplotype reconstruction from population data. Am J Hum Genet 68:978-989.
-
(2001)
Am J Hum Genet
, vol.68
, pp. 978-989
-
-
Stephens, M.1
Smith, N.J.2
Donnelly, P.3
-
36
-
-
13444269543
-
Haploview: Analysis and visualization of LD and haplotype maps
-
Barrett JC, Fry B, Maller J, Daly MJ (2005) Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics 21:263-265.
-
(2005)
Bioinformatics
, vol.21
, pp. 263-265
-
-
Barrett, J.C.1
Fry, B.2
Maller, J.3
Daly, M.J.4
-
37
-
-
18444369013
-
The structure of haplotype blocks in the human genome
-
Gabriel SB, et al. (2002) The structure of haplotype blocks in the human genome. Science 296:2225-2229.
-
(2002)
Science
, vol.296
, pp. 2225-2229
-
-
Gabriel, S.B.1
-
38
-
-
0347361674
-
Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data
-
Li N, Stephens M (2003) Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data. Genetics 165:2213-2233.
-
(2003)
Genetics
, vol.165
, pp. 2213-2233
-
-
Li, N.1
Stephens, M.2
-
39
-
-
3042700117
-
Evidence for substantial fine-scale variation in recombination rates across the human genome
-
Crawford DC, et al. (2004) Evidence for substantial fine-scale variation in recombination rates across the human genome. Nat Genet 36:700-706.
-
(2004)
Nat Genet
, vol.36
, pp. 700-706
-
-
Crawford, D.C.1
-
41
-
-
0036713510
-
Human non-synonymous SNPs: Server and survey
-
Ramensky V, Bork P, Sunyaev S (2002) Human non-synonymous SNPs: server and survey. Nucleic Acids Res 30:3894-3900.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 3894-3900
-
-
Ramensky, V.1
Bork, P.2
Sunyaev, S.3
-
42
-
-
68149165614
-
Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm
-
Kumar P, Henikoff S, Ng PC (2009) Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm. Nat Protoc 4:1073-1081.
-
(2009)
Nat Protoc
, vol.4
, pp. 1073-1081
-
-
Kumar, P.1
Henikoff, S.2
Ng, P.C.3
-
43
-
-
33750353461
-
Predicting the effects of amino acid substitutions on protein function
-
Ng PC, Henikoff S (2006) Predicting the effects of amino acid substitutions on protein function. Annu Rev Genomics Hum Genet 7:61-80.
-
(2006)
Annu Rev Genomics Hum Genet
, vol.7
, pp. 61-80
-
-
Ng, P.C.1
Henikoff, S.2
-
44
-
-
0346103664
-
Widespread purifying selection at polymorphic sites in human protein-coding loci
-
Hughes AL, et al. (2003) Widespread purifying selection at polymorphic sites in human protein-coding loci. Proc Natl Acad Sci USA 100:15754-15757.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 15754-15757
-
-
Hughes, A.L.1
-
45
-
-
33750959091
-
Higher intensity of purifying selection on >90% of the human genes revealed by the intrinsic replacement mutation rates
-
Subramanian S, Kumar S (2006) Higher intensity of purifying selection on >90% of the human genes revealed by the intrinsic replacement mutation rates. Mol Biol Evol 23:2283-2287.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 2283-2287
-
-
Subramanian, S.1
Kumar, S.2
-
46
-
-
0024313579
-
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
-
Tajima F (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123:585-595.
-
(1989)
Genetics
, vol.123
, pp. 585-595
-
-
Tajima, F.1
-
47
-
-
0027453041
-
Statistical tests of neutrality of mutations
-
Fu Y-X, Li W-H (1993) Statistical tests of neutrality of mutations. Genetics 133:693-709.
-
(1993)
Genetics
, vol.133
, pp. 693-709
-
-
Fu, Y.-X.1
Li, W.-H.2
-
48
-
-
0030821992
-
Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection
-
Fu Y-X (1997) Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147:915-925.
-
(1997)
Genetics
, vol.147
, pp. 915-925
-
-
Fu, Y.-X.1
-
49
-
-
65649097560
-
High-resolution haplotype block structure in the cattle genome
-
Villa-Angulo R, et al. (2009) High-resolution haplotype block structure in the cattle genome. BMC Genet 10:19.
-
(2009)
BMC Genet
, vol.10
, pp. 19
-
-
Villa-Angulo, R.1
-
50
-
-
68249118173
-
-
Barreiro LB, et al. (2009) Evolutionary dynamics of human Toll-like receptors and their different contributions to host defense. PLoS Genet 5:e1000562.
-
Barreiro LB, et al. (2009) Evolutionary dynamics of human Toll-like receptors and their different contributions to host defense. PLoS Genet 5:e1000562.
-
-
-
-
51
-
-
62449095842
-
Correcting estimators of θ and Tajima's D for ascertainment biases caused by the single-nucleotide polymorphism discovery process
-
Ramírez-Soriano A, Nielsen R (2009) Correcting estimators of θ and Tajima's D for ascertainment biases caused by the single-nucleotide polymorphism discovery process. Genetics 181:701-710.
-
(2009)
Genetics
, vol.181
, pp. 701-710
-
-
Ramírez-Soriano, A.1
Nielsen, R.2
-
52
-
-
22144452520
-
The evolution of vertebrate Toll-like receptors
-
Roach JC, et al. (2005) The evolution of vertebrate Toll-like receptors. Proc Natl Acad Sci USA 102:9577-9582.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 9577-9582
-
-
Roach, J.C.1
-
53
-
-
66349114360
-
Signatures of natural selection are not uniform across genes of innate immune system, but purifying selection is the dominant signature
-
Mukherjee S, Sarkar-Roy N, Wagener DK, Majumder PP (2009) Signatures of natural selection are not uniform across genes of innate immune system, but purifying selection is the dominant signature. Proc Natl Acad Sci USA 106:7073-7078.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 7073-7078
-
-
Mukherjee, S.1
Sarkar-Roy, N.2
Wagener, D.K.3
Majumder, P.P.4
-
54
-
-
6344266860
-
Prion protein gene (PRNP) variants and evidence for strong purifying selection in functionally important regions of bovine exon 3
-
Seabury CM, Honeycutt RL, Rooney AP, Halbert ND, Derr JN (2004) Prion protein gene (PRNP) variants and evidence for strong purifying selection in functionally important regions of bovine exon 3. Proc Natl Acad Sci USA 101:15142-15147.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 15142-15147
-
-
Seabury, C.M.1
Honeycutt, R.L.2
Rooney, A.P.3
Halbert, N.D.4
Derr, J.N.5
-
55
-
-
0242691208
-
A comparison of bayesian methods for haplotype reconstruction from population genotype data
-
Stephens M, Donnelly P (2003) A comparison of bayesian methods for haplotype reconstruction from population genotype data. Am J Hum Genet 73:1162-1169.
-
(2003)
Am J Hum Genet
, vol.73
, pp. 1162-1169
-
-
Stephens, M.1
Donnelly, P.2
-
56
-
-
33344458848
-
-
Marchini J, et al.; International HapMap Consortium (2006) A comparison of phasing algorithms for trios and unrelated individuals. Am J Hum Genet 78:437-450.
-
Marchini J, et al.; International HapMap Consortium (2006) A comparison of phasing algorithms for trios and unrelated individuals. Am J Hum Genet 78:437-450.
-
-
-
-
57
-
-
0035139147
-
Intraspecific gene genealogies: Trees grafting into networks
-
Posada D, Crandall KA (2001) Intraspecific gene genealogies: trees grafting into networks. Trends Ecol Evol 16:37-45.
-
(2001)
Trends Ecol Evol
, vol.16
, pp. 37-45
-
-
Posada, D.1
Crandall, K.A.2
-
58
-
-
68049133091
-
DNA sequence polymorphism analysis using DSP
-
Rozas J (2009) DNA sequence polymorphism analysis using DSP. Methods Mol Biol 537:337-350.
-
(2009)
Methods Mol Biol
, vol.537
, pp. 337-350
-
-
Rozas, J.1
-
59
-
-
0023612034
-
Estimating the recombination parameter of a finite population model without selection
-
Hudson RR (1987) Estimating the recombination parameter of a finite population model without selection. Genet Res 50:245-250.
-
(1987)
Genet Res
, vol.50
, pp. 245-250
-
-
Hudson, R.R.1
|