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Volumn 8, Issue 1, 2017, Pages

Non-parametric genetic prediction of complex traits with latent Dirichlet process regression models

Author keywords

[No Author keywords available]

Indexed keywords

GENE; GENETIC ANALYSIS; GENOMICS; GENOTYPE; MEDICINE; PLANT BREEDING; PREDICTION; REGRESSION ANALYSIS; SOFTWARE;

EID: 85028927957     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/s41467-017-00470-2     Document Type: Article
Times cited : (85)

References (70)
  • 1
    • 84981164833 scopus 로고    scopus 로고
    • A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants
    • Fritsche, L. G. et al. A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants. Nat. Genet. 48, 134-143 (2016).
    • (2016) Nat. Genet. , vol.48 , pp. 134-143
    • Fritsche, L.G.1
  • 2
    • 84960815875 scopus 로고    scopus 로고
    • The contribution of rare variation to prostate cancer heritability
    • Mancuso, N. et al. The contribution of rare variation to prostate cancer heritability. Nat. Genet. 48, 30-35 (2016).
    • (2016) Nat. Genet. , vol.48 , pp. 30-35
    • Mancuso, N.1
  • 3
    • 84978128486 scopus 로고    scopus 로고
    • The genetic architecture of type 2 diabetes
    • Fuchsberger, C. et al. The genetic architecture of type 2 diabetes. Nature 536, 41-47 (2016).
    • (2016) Nature , vol.536 , pp. 41-47
    • Fuchsberger, C.1
  • 4
    • 84969213492 scopus 로고    scopus 로고
    • Genome-wide association study of 14, 000 cases of seven common diseases and 3000 shared controls
    • The Wellcome Trust Case Control Consortium
    • The Wellcome Trust Case Control Consortium. Genome-wide association study of 14, 000 cases of seven common diseases and 3000 shared controls. Nature 447, 661-678 (2007).
    • (2007) Nature , vol.447 , pp. 661-678
  • 5
    • 84887099827 scopus 로고    scopus 로고
    • Discovery and refinement of loci associated with lipid levels
    • Global Lipids Genetics Consortium
    • Global Lipids Genetics Consortium. Discovery and refinement of loci associated with lipid levels. Nat. Genet. 45, 1274-1283 (2013).
    • (2013) Nat. Genet. , vol.45 , pp. 1274-1283
  • 6
    • 85016619002 scopus 로고    scopus 로고
    • Genome-wide association study identifies three novel loci in Fuchs endothelial corneal dystrophy
    • Afshari, N. A. et al. Genome-wide association study identifies three novel loci in Fuchs endothelial corneal dystrophy. Nat. Commun. 8, 14898 (2017).
    • (2017) Nat. Commun. , vol.8 , pp. 14898
    • Afshari, N.A.1
  • 7
    • 85011317435 scopus 로고    scopus 로고
    • Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer
    • Hoffmann, T. J. et al. Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer. Nat. Commun. 8, 14248 (2017).
    • (2017) Nat. Commun. , vol.8 , pp. 14248
    • Hoffmann, T.J.1
  • 8
    • 85010952930 scopus 로고    scopus 로고
    • Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk
    • Warren, H. R. et al. Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk. Nat. Genet. 49, 403-415 (2017).
    • (2017) Nat. Genet. , vol.49 , pp. 403-415
    • Warren, H.R.1
  • 9
    • 79955643147 scopus 로고    scopus 로고
    • Beyond missing heritability: Prediction of complex traits
    • Makowsky, R. et al. Beyond missing heritability: Prediction of complex traits. PLoS Genet. 7, e1002051 (2011).
    • (2011) PLoS Genet. , vol.7 , pp. e1002051
    • Makowsky, R.1
  • 10
    • 77958085213 scopus 로고    scopus 로고
    • Genetic architecture of complex traits and accuracy of genomic prediction: Coat colour, milk-fat percentage, and type in holstein cattle as contrasting model traits
    • Hayes, B. J., Pryce, J., Chamberlain, A. J., Bowman, P. J. & Goddard, M. E. Genetic architecture of complex traits and accuracy of genomic prediction: Coat colour, milk-fat percentage, and type in holstein cattle as contrasting model traits. PLoS Genet. 6, e1001139 (2010).
    • (2010) PLoS Genet. , vol.6 , pp. e1001139
    • Hayes, B.J.1    Pryce, J.2    Chamberlain, A.J.3    Bowman, P.J.4    Goddard, M.E.5
  • 11
    • 84965076156 scopus 로고    scopus 로고
    • Developing and evaluating polygenic risk prediction models for stratified disease prevention
    • Chatterjee, N., Shi, J. & Garcia-Closas, M. Developing and evaluating polygenic risk prediction models for stratified disease prevention. Nat. Rev. Genet. 17, 392-406 (2016).
    • (2016) Nat. Rev. Genet. , vol.17 , pp. 392-406
    • Chatterjee, N.1    Shi, J.2    Garcia-Closas, M.3
  • 12
    • 84940780615 scopus 로고    scopus 로고
    • A gene-based association method for mapping traits using reference transcriptome data
    • Gamazon, E. R. et al. A gene-based association method for mapping traits using reference transcriptome data. Nat. Genet. 47, 1091-1098 (2015).
    • (2015) Nat. Genet. , vol.47 , pp. 1091-1098
    • Gamazon, E.R.1
  • 13
    • 77957947562 scopus 로고    scopus 로고
    • Hundreds of variants clustered in genomic loci and biological pathways affect human height
    • Allen, H. L. et al. Hundreds of variants clustered in genomic loci and biological pathways affect human height. Nature 467, 832-838 (2010).
    • (2010) Nature , vol.467 , pp. 832-838
    • Allen, H.L.1
  • 14
    • 84871996129 scopus 로고    scopus 로고
    • Genome-wide association study dissects the genetic architecture of oil biosynthesis in maize kernels
    • Li, H. et al. Genome-wide association study dissects the genetic architecture of oil biosynthesis in maize kernels. Nat. Genet. 45, 43-50 (2013).
    • (2013) Nat. Genet. , vol.45 , pp. 43-50
    • Li, H.1
  • 15
    • 84878685948 scopus 로고    scopus 로고
    • Comprehensive genotyping of the USA national maize inbred seed bank
    • Romay, M. C. et al. Comprehensive genotyping of the USA national maize inbred seed bank. Genome Biol. 14, R55 (2013).
    • (2013) Genome Biol. , vol.14 , pp. R55
    • Romay, M.C.1
  • 16
    • 84957434055 scopus 로고    scopus 로고
    • Genomic prediction of breeding values for carcass traits in Nellore cattle
    • Fernandes Júnior, G. A. et al. Genomic prediction of breeding values for carcass traits in Nellore cattle. Genet. Sel. Evol. 48, 7 (2016).
    • (2016) Genet. Sel. Evol. , vol.48 , pp. 7
    • Fernandes Júnior, G.A.1
  • 17
    • 84928981836 scopus 로고    scopus 로고
    • Accuracy of whole-genome prediction using a genetic architecture-enhanced variance-covariance matrix
    • Zhang, Z. et al. Accuracy of whole-genome prediction using a genetic architecture-enhanced variance-covariance matrix. G3 5, 615-627 (2015).
    • (2015) G3 , vol.5 , pp. 615-627
    • Zhang, Z.1
  • 18
    • 0035045051 scopus 로고    scopus 로고
    • Prediction of total genetic value using genome-wide dense marker maps
    • Meuwissen, T., Hayes, B. & Goddard, M. Prediction of total genetic value using genome-wide dense marker maps. Genetics 157, 1819-1829 (2001).
    • (2001) Genetics , vol.157 , pp. 1819-1829
    • Meuwissen, T.1    Hayes, B.2    Goddard, M.3
  • 19
    • 84880802650 scopus 로고    scopus 로고
    • Prediction of complex human traits using the genomic best linear unbiased predictor
    • de los Campos, G., Vazquez, A. I., Fernando, R., Klimentidis, Y. C. & Sorensen, D. Prediction of complex human traits using the genomic best linear unbiased predictor. PLoS Genet. 9, e1003608 (2013).
    • (2013) PLoS Genet. , vol.9 , pp. e1003608
    • De Los Campos, G.1    Vazquez, A.I.2    Fernando, R.3    Klimentidis, Y.C.4    Sorensen, D.5
  • 20
    • 55449114253 scopus 로고    scopus 로고
    • Predicting unobserved phenotypes for complex traits from whole-genome SNP data
    • Lee, S. H., van der Werf, J. H. J., Hayes, B. J., Goddard, M. E. & Visscher, P. M. Predicting unobserved phenotypes for complex traits from whole-genome SNP data. PLoS Genet. 4, e1000231 (2008).
    • (2008) PLoS Genet. , vol.4 , pp. e1000231s
    • Lee, S.H.1    Van Der Werf, J.H.J.2    Hayes, B.J.3    Goddard, M.E.4    Visscher, P.M.5
  • 21
    • 59349098163 scopus 로고    scopus 로고
    • Genomic selection in dairy cattle: Progress and challenges
    • Hayes, B., Bowman, P., Chamberlain, A. & Goddard, M. Genomic selection in dairy cattle: Progress and challenges. J. Dairy Sci. 92, 433-443 (2009).
    • (2009) J. Dairy Sci. , vol.92 , pp. 433-443
    • Hayes, B.1    Bowman, P.2    Chamberlain, A.3    Goddard, M.4
  • 23
    • 84882735348 scopus 로고    scopus 로고
    • Accelerating improvement of livestock with genomic selection
    • Meuwissen, T., Hayes, B. & Goddard, M. Accelerating improvement of livestock with genomic selection. Annu. Rev. Anim. Biosci 1, 221-237 (2013).
    • (2013) Annu. Rev. Anim. Biosci , vol.1 , pp. 221-237
    • Meuwissen, T.1    Hayes, B.2    Goddard, M.3
  • 24
    • 84875700256 scopus 로고    scopus 로고
    • Projecting the performance of risk prediction based on polygenic analyses of genome-wide association studies
    • Chatterjee, N. et al. Projecting the performance of risk prediction based on polygenic analyses of genome-wide association studies. Nat. Genet. 45, 400-405 (2013).
    • (2013) Nat. Genet. , vol.45 , pp. 400-405
    • Chatterjee, N.1
  • 25
    • 84937522502 scopus 로고    scopus 로고
    • Improving phenotypic prediction by combining genetic and epigenetic associations
    • Shah, S. et al. Improving phenotypic prediction by combining genetic and epigenetic associations. Am. J. Hum. Genet. 97, 75-85 (2015).
    • (2015) Am. J. Hum. Genet. , vol.97 , pp. 75-85
    • Shah, S.1
  • 26
    • 84925130699 scopus 로고    scopus 로고
    • Joint analysis of psychiatric disorders increases accuracy of risk prediction for schizophrenia, bipolar disorder, and major depressive disorder
    • Maier, R. et al. Joint analysis of psychiatric disorders increases accuracy of risk prediction for schizophrenia, bipolar disorder, and major depressive disorder. Am. J. Hum. Genet. 96, 283-294 (2015).
    • (2015) Am. J. Hum. Genet. , vol.96 , pp. 283-294
    • Maier, R.1
  • 27
    • 84976891142 scopus 로고    scopus 로고
    • Multikernel: Linear mixed models for complex phenotype prediction
    • Weissbrod, O., Geiger, D. & Rosset, S. Multikernel: Linear mixed models for complex phenotype prediction. Genome Res. 26, 969-979 (2016).
    • (2016) Genome Res. , vol.26 , pp. 969-979
    • Weissbrod, O.1    Geiger, D.2    Rosset, S.3
  • 28
    • 77954140531 scopus 로고    scopus 로고
    • Common SNPs explain a large proportion of the heritability for human height
    • Yang, J. et al. Common SNPs explain a large proportion of the heritability for human height. Nat. Genet. 42, 565-569 (2010).
    • (2010) Nat. Genet. , vol.42 , pp. 565-569
    • Yang, J.1
  • 31
    • 49849103360 scopus 로고    scopus 로고
    • Bayesian LASSO for quantitative trait loci mapping
    • Yi, N. & Xu, S. Bayesian LASSO for quantitative trait loci mapping. Genetics 179, 1045-1055 (2008).
    • (2008) Genetics , vol.179 , pp. 1045-1055
    • Yi, N.1    Xu, S.2
  • 32
    • 48249096806 scopus 로고    scopus 로고
    • Simultaneous analysis of all SNPs in genome-wide and re-sequencing association studies
    • Hoggart, C. J., Whittaker, J. C., De Iorio, M. & Balding, D. J. Simultaneous analysis of all SNPs in genome-wide and re-sequencing association studies. PLoS Genet. 4, e1000130 (2008).
    • (2008) PLoS Genet. , vol.4 , pp. e1000130
    • Hoggart, C.J.1    Whittaker, J.C.2    De Iorio, M.3    Balding, D.J.4
  • 33
    • 82955223524 scopus 로고    scopus 로고
    • Bayesian variable selection regression for genomewide association studies and other large-scale problems
    • Guan, Y. & Stephens, M. Bayesian variable selection regression for genomewide association studies and other large-scale problems. Ann. Appl. Stat 5, 1780-1815 (2011).
    • (2011) Ann. Appl. Stat , vol.5 , pp. 1780-1815
    • Guan, Y.1    Stephens, M.2
  • 34
    • 84874783818 scopus 로고    scopus 로고
    • Polygenic modeling with Bayesian sparse linear mixed models
    • Zhou, X., Carbonetto, P. & Stephens, M. Polygenic modeling with Bayesian sparse linear mixed models. PLoS Genet. 9, e1003264 (2013).
    • (2013) PLoS Genet. , vol.9 , pp. e1003264
    • Zhou, X.1    Carbonetto, P.2    Stephens, M.3
  • 35
    • 84930339072 scopus 로고    scopus 로고
    • Simultaneous discovery, estimation and prediction analysis of complex traits using a Bayesian mixture model
    • Moser, G. et al. Simultaneous discovery, estimation and prediction analysis of complex traits using a bayesian mixture model. PLoS Genet. 11, e1004969 (2015).
    • (2015) PLoS Genet. , vol.11 , pp. e1004969
    • Moser, G.1
  • 36
    • 67349287476 scopus 로고    scopus 로고
    • Genomic selection: Prediction of accuracy and maximisation of long term response
    • Goddard, M. Genomic selection: prediction of accuracy and maximisation of long term response. Genetica 136, 245-257 (2009).
    • (2009) Genetica , vol.136 , pp. 245-257
    • Goddard, M.1
  • 37
    • 84874126433 scopus 로고    scopus 로고
    • Bayesian non-parametrics and the probabilistic approach to modelling
    • Ghahramani, Z. Bayesian non-parametrics and the probabilistic approach to modelling. Philos. T. R. Soc. A 371, 20110553 (2013).
    • (2013) Philos. T. R. Soc. A , vol.371 , pp. 20110553
    • Ghahramani, Z.1
  • 38
    • 84878524188 scopus 로고    scopus 로고
    • Bayesian nonparametric inference-why and how
    • Müller, P. & Mitra, R. Bayesian nonparametric inference-why and how. Bayesian Anal. 8, 269-302 (2013).
    • (2013) Bayesian Anal. , vol.8 , pp. 269-302
    • Müller, P.1    Mitra, R.2
  • 39
    • 84857235576 scopus 로고    scopus 로고
    • A tutorial on Bayesian nonparametric models
    • Gershman, S. J. & Blei, D. M. A tutorial on Bayesian nonparametric models. J. Math. Psychol. 56, 1-12 (2012).
    • (2012) J. Math. Psychol. , vol.56 , pp. 1-12
    • Gershman, S.J.1    Blei, D.M.2
  • 40
    • 4043092820 scopus 로고    scopus 로고
    • Nonparametric Bayesian data analysis
    • Müller, P. & Quintana, F. A. Nonparametric bayesian data analysis. Stat. Sci. 19, 95-110 (2004).
    • (2004) Stat. Sci. , vol.19 , pp. 95-110
    • Müller, P.1    Quintana, F.A.2
  • 41
    • 84907223324 scopus 로고    scopus 로고
    • MultiBLUP: Improved SNP-based prediction for complex traits
    • Speed, D. & Balding, D. J. MultiBLUP: improved SNP-based prediction for complex traits. Genome Res. 24, 1550-1557 (2014).
    • (2014) Genome Res. , vol.24 , pp. 1550-1557
    • Speed, D.1    Balding, D.J.2
  • 42
    • 84885645853 scopus 로고    scopus 로고
    • Transcriptome and genome sequencing uncovers functional variation in humans
    • Lappalainen, T. et al. Transcriptome and genome sequencing uncovers functional variation in humans. Nature 501, 506-511 (2013).
    • (2013) Nature , vol.501 , pp. 506-511
    • Lappalainen, T.1
  • 43
    • 84975795680 scopus 로고    scopus 로고
    • An integrated map of genetic variation from 1092 human genomes
    • 1000 Genomes Project Consortium
    • 1000 Genomes Project Consortium. An integrated map of genetic variation from 1092 human genomes. Nature 491, 56-65 (2012).
    • (2012) Nature , vol.491 , pp. 56-65
  • 44
    • 16244401458 scopus 로고    scopus 로고
    • Regularization and variable selection via the Elastic Net
    • Zou, H. & Hastie, T. Regularization and variable selection via the Elastic Net. J. R. Stat. Soc. Ser. B 67, 301-320 (2005).
    • (2005) J. R. Stat. Soc. Ser. B , vol.67 , pp. 301-320
    • Zou, H.1    Hastie, T.2
  • 45
    • 34247579476 scopus 로고    scopus 로고
    • The third generation cohort of the national heart, lung, and blood institute's framingham heart study: Design, recruitment, and initial examination
    • Splansky, G. L. et al. The third generation cohort of the national heart, lung, and blood institute's framingham heart study: design, recruitment, and initial examination. Am. J. Epidemiol. 165, 1328-1335 (2007).
    • (2007) Am. J. Epidemiol. , vol.165 , pp. 1328-1335
    • Splansky, G.L.1
  • 46
    • 84876554236 scopus 로고    scopus 로고
    • Animal QTLdb: An improved database tool for livestock animal QTL/association data dissemination in the post-genome era
    • Hu, Z. L., Park, C. A., Wu, X. L. & Reecy, J. M. Animal QTLdb: An improved database tool for livestock animal QTL/association data dissemination in the post-genome era. Nucleic Acids Res. 41, D871-D879 (2013).
    • (2013) Nucleic Acids Res. , vol.41 , pp. D871-D879
    • Hu, Z.L.1    Park, C.A.2    Wu, X.L.3    Reecy, J.M.4
  • 47
    • 84936743760 scopus 로고    scopus 로고
    • Genomic prediction of complex human traits: Relatedness, trait architecture and predictive meta-models
    • Spiliopoulou, A. et al. Genomic prediction of complex human traits: relatedness, trait architecture and predictive meta-models. Hum. Mol. Genet. 24, 4167-4182 (2015).
    • (2015) Hum. Mol. Genet. , vol.24 , pp. 4167-4182
    • Spiliopoulou, A.1
  • 48
    • 80755167697 scopus 로고    scopus 로고
    • Using the genomic relationship matrix to predict the accuracy of genomic selection
    • Goddard, M. E., Hayes, B. J. & Meuwissen, T. H. E. Using the genomic relationship matrix to predict the accuracy of genomic selection. J. Anim. Breed. Genet. 128, 409-421 (2011).
    • (2011) J. Anim. Breed. Genet. , vol.128 , pp. 409-421
    • Goddard, M.E.1    Hayes, B.J.2    Meuwissen, T.H.E.3
  • 49
    • 85012098079 scopus 로고    scopus 로고
    • Using information of relatives in genomic prediction to apply effective stratified medicine
    • Lee, S. H., Weerasinghe, W. M. S. P., Wray, N. R., Goddard, M. E. & van der Werf, J. H. J. Using information of relatives in genomic prediction to apply effective stratified medicine. Sci. Rep. 7, 42091 (2017).
    • (2017) Sci. Rep. , vol.7 , pp. 42091
    • Lee, S.H.1    Weerasinghe, W.M.S.P.2    Wray, N.R.3    Goddard, M.E.4    Van Der Werf, J.H.J.5
  • 50
    • 84860819981 scopus 로고    scopus 로고
    • Scalable variational inference for Bayesian variable selection in regression, and its accuracy in genetic association studies
    • Carbonetto, P. & Stephens, M. Scalable variational inference for Bayesian variable selection in regression, and its accuracy in genetic association studies. Bayesian Anal. 7, 73-108 (2012).
    • (2012) Bayesian Anal. , vol.7 , pp. 73-108
    • Carbonetto, P.1    Stephens, M.2
  • 51
    • 84920935072 scopus 로고    scopus 로고
    • Penalized multimarker vs. Single-marker regression methods for genome-wide association studies of quantitative traits
    • Yi, H., Breheny, P., Imam, N., Liu, Y. & Hoeschele, I. Penalized multimarker vs. single-marker regression methods for genome-wide association studies of quantitative traits. Genetics 199, 205-222 (2015).
    • (2015) Genetics , vol.199 , pp. 205-222
    • Yi, H.1    Breheny, P.2    Imam, N.3    Liu, Y.4    Hoeschele, I.5
  • 52
    • 85026667037 scopus 로고    scopus 로고
    • Differential expression analysis for RNAseq using Poisson mixed models
    • Sun, S. et al. Differential expression analysis for RNAseq using Poisson mixed models. Nucleic Acids Res. gkx204. doi: 210. 1093/nar/gkx1204 (2017).
    • (2017) Nucleic Acids Res. , pp. gkx204
    • Sun, S.1
  • 53
    • 84964699021 scopus 로고    scopus 로고
    • The genetic architecture of gene expression levels in wild baboons
    • Tung, J., Zhou, X., Alberts, S. C., Stephens, M. & Gilad, Y. The genetic architecture of gene expression levels in wild baboons. Elife 4, e04729 (2015).
    • (2015) Elife , vol.4 , pp. e04729
    • Tung, J.1    Zhou, X.2    Alberts, S.C.3    Stephens, M.4    Gilad, Y.5
  • 54
    • 84937492151 scopus 로고    scopus 로고
    • Epigenetic modifications are associated with inter-species gene expression variation in primates
    • Zhou, X. et al. Epigenetic modifications are associated with inter-species gene expression variation in primates. Genome Biol. 15, 1 (2014).
    • (2014) Genome Biol. , vol.15 , pp. 1
    • Zhou, X.1
  • 55
    • 84949294819 scopus 로고    scopus 로고
    • A Flexible, efficient binomial mixed model for identifying differential DNA methylation in bisulfite sequencing data
    • Lea, A. J., Tung, J. & Zhou, X. A Flexible, efficient binomial mixed model for identifying differential DNA methylation in bisulfite sequencing data. PLoS Genet. 11, e1005650 (2015).
    • (2015) PLoS Genet , vol.11 , pp. e1005650
    • Lea, A.J.1    Tung, J.2    Zhou, X.3
  • 56
    • 70349956433 scopus 로고    scopus 로고
    • Finding the missing heritability of complex diseases
    • Manolio, T. et al. Finding the missing heritability of complex diseases. Nature 461, 747-753 (2009).
    • (2009) Nature , vol.461 , pp. 747-753
    • Manolio, T.1
  • 57
    • 85007574079 scopus 로고    scopus 로고
    • Winner's curse correction and variable thresholding improve performance of polygenic risk modeling based on genome-wide association study summary-level data
    • Shi, J. et al. Winner's curse correction and variable thresholding improve performance of polygenic risk modeling based on genome-wide association study summary-level data. PLoS Genet. 12, e1006493 (2016).
    • (2016) PLoS Genet. , vol.12 , pp. e1006493
    • Shi, J.1
  • 58
    • 79951530319 scopus 로고    scopus 로고
    • The Bayesian lasso for genome-wide association studies
    • Li, J., Das, K., Fu, G., Li, R. & Wu, R. The Bayesian lasso for genome-wide association studies. Bioinformatics 27, 516-523 (2011).
    • (2011) Bioinformatics , vol.27 , pp. 516-523
    • Li, J.1    Das, K.2    Fu, G.3    Li, R.4    Wu, R.5
  • 59
    • 84867186048 scopus 로고    scopus 로고
    • Variational inference for Dirichlet process mixtures
    • Blei, D. M. & Jordan, M. I. Variational inference for Dirichlet process mixtures. Bayesian Anal. 1, 121-143 (2006).
    • (2006) Bayesian Anal. , vol.1 , pp. 121-143
    • Blei, D.M.1    Jordan, M.I.2
  • 60
    • 85023644081 scopus 로고    scopus 로고
    • Variational inference: A review for statisticians
    • Blei, D. M., Kucukelbir, A., & McAuliffe, J. D. Variational inference: A review for statisticians. J. Am. Stat. Assoc. 112, 859-877 (2017).
    • (2017) J. Am. Stat. Assoc. , vol.112 , pp. 859-877
    • Blei, D.M.1    Kucukelbir, A.2    McAuliffe, J.D.3
  • 62
    • 85026634921 scopus 로고    scopus 로고
    • A Unified framework for variance component estimation with summary statistics in genome-wide association studies
    • (in press)
    • Zhou, X. A Unified framework for variance component estimation with summary statistics in genome-wide association studies. Ann. Appl. Stat. (in press), Preprint at http://biorxiv. org/content/early/2016/03/08/042846 (2017).
    • (2017) Ann. Appl. Stat.
    • Zhou, X.1
  • 64
    • 75649126894 scopus 로고    scopus 로고
    • Accuracy of genomic selection using stochastic search variable selection in Australian Holstein Friesian dairy cattle
    • Verbyla, K. L., Hayes, B. J., Bowman, P. J. & Goddard, M. E. Accuracy of genomic selection using stochastic search variable selection in Australian Holstein Friesian dairy cattle. Genet. Res. 91, 307-311 (2009).
    • (2009) Genet. Res. , vol.91 , pp. 307-311
    • Verbyla, K.L.1    Hayes, B.J.2    Bowman, P.J.3    Goddard, M.E.4
  • 65
    • 84930368286 scopus 로고    scopus 로고
    • Cross-population joint analysis of eQTLs: Fine mapping and functional annotation
    • Wen, X., Luca, F. & Pique-Regi, R. Cross-population joint analysis of eQTLs: Fine mapping and functional annotation. PLoS Genet. 11, e1005176 (2015).
    • (2015) PLoS Genet. , vol.11 , pp. e1005176
    • Wen, X.1    Luca, F.2    Pique-Regi, R.3
  • 66
    • 84865760395 scopus 로고    scopus 로고
    • GENCODE: The reference human genome annotation for the ENCODE Project
    • Harrow, J. et al. GENCODE: The reference human genome annotation for The ENCODE Project. Genome Res. 22, 1760-1774 (2012).
    • (2012) Genome Res. , vol.22 , pp. 1760-1774
    • Harrow, J.1
  • 67
    • 84861734626 scopus 로고    scopus 로고
    • Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses
    • Stegle, O., Parts, L., Piipari, M., Winn, J. & Durbin, R. Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses. Nat. Protoc. 7, 500-507 (2012).
    • (2012) Nat. Protoc. , vol.7 , pp. 500-507
    • Stegle, O.1    Parts, L.2    Piipari, M.3    Winn, J.4    Durbin, R.5
  • 68
    • 58149175796 scopus 로고    scopus 로고
    • Practical issues in imputation-based association mapping
    • Guan, Y. & Stephens, M. Practical issues in imputation-based association mapping. PLoS Genet. 4, e1000279 (2008).
    • (2008) PLoS Genet. , vol.4 , pp. e1000279
    • Guan, Y.1    Stephens, M.2
  • 69
    • 67651222400 scopus 로고    scopus 로고
    • A flexible and accurate genotype imputation method for the next generation of genome-wide association studies
    • Howie, B. N., Donnelly, P. & Marchini, J. A flexible and accurate genotype imputation method for the next generation of genome-wide association studies. PLoS Genet. 5, e1000529 (2009).
    • (2009) PLoS Genet , vol.5 , pp. e1000529
    • Howie, B.N.1    Donnelly, P.2    Marchini, J.3


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