메뉴 건너뛰기




Volumn 6, Issue 9, 2010, Pages

Genetic architecture of complex traits and accuracy of genomic Prediction: Coat colour, Milk-fat percentage, and type in holstein cattle as contrasting model traits

Author keywords

[No Author keywords available]

Indexed keywords

MICROPHTHALMIA ASSOCIATED TRANSCRIPTION FACTOR; MILK FAT; STEM CELL FACTOR RECEPTOR; LIPID;

EID: 77958085213     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1001139     Document Type: Article
Times cited : (320)

References (37)
  • 1
    • 34948877698 scopus 로고    scopus 로고
    • Prediction of individual genetic risk to disease from genome-wide association studies
    • Wray NR, Goddard ME, Visscher PM (2007) Prediction of individual genetic risk to disease from genome-wide association studies. Genome Res 17: 1520-1528.
    • (2007) Genome Res , vol.17 , pp. 1520-1528
    • Wray, N.R.1    Goddard, M.E.2    Visscher, P.M.3
  • 2
    • 55449114253 scopus 로고    scopus 로고
    • Predicting unobserved phenotypes for complex traits from whole-genome SNP data
    • doi:10.1371/journal.pgen.1000231
    • Lee SH, van der Werf JH, Hayes BJ, Goddard ME, Visscher PM (2008) Predicting unobserved phenotypes for complex traits from whole-genome SNP data. PLoS Genet 4: e1000231. doi:10.1371/journal.pgen.1000231.
    • (2008) PLoS Genet , vol.4
    • Lee, S.H.1    van der Werf, J.H.2    Hayes, B.J.3    Goddard, M.E.4    Visscher, P.M.5
  • 4
    • 66249122107 scopus 로고    scopus 로고
    • Mapping genes for complex traits in domestic animals and their use in breeding programs
    • Goddard ME, Hayes BJ (2009) Mapping genes for complex traits in domestic animals and their use in breeding programs. Nature Review Genetics 10: 381-391.
    • (2009) Nature Review Genetics , vol.10 , pp. 381-391
    • Goddard, M.E.1    Hayes, B.J.2
  • 6
    • 54449097329 scopus 로고    scopus 로고
    • Accuracy of predicting the genetic risk of disease using a genome-wide approach
    • doi:10.1371/journal.pone.0003395
    • Daetwyler HD, Villanueva B, Woolliams JA (2008) Accuracy of predicting the genetic risk of disease using a genome-wide approach. PLoS One 3: e3395. doi:10.1371/journal.pone.0003395.
    • (2008) PLoS One , vol.3
    • Daetwyler, H.D.1    Villanueva, B.2    Woolliams, J.A.3
  • 7
    • 67349158217 scopus 로고    scopus 로고
    • Genomic selection: Prediction of accuracy and maximisation of long term response
    • 18704696
    • Goddard ME (2008) Genomic selection: prediction of accuracy and maximisation of long term response. Genetica Epub PMID: 18704696.
    • (2008) Genetica Epub PMID
    • Goddard, M.E.1
  • 8
    • 77949826087 scopus 로고    scopus 로고
    • Accuracy of breeding values of 'unrelated' individuals predicted by dense SNP genotyping
    • Meuwissen THE (2009) Accuracy of breeding values of 'unrelated' individuals predicted by dense SNP genotyping. Genetics Selection Evolution 41: 35.
    • (2009) Genetics Selection Evolution , vol.41 , pp. 35
    • Meuwissen, T.H.E.1
  • 9
    • 77949812757 scopus 로고    scopus 로고
    • A comparison of five methods to predict genomic breeding values of dairy bulls from genomewide SNP markers
    • Moser G, Tier B, Crump RE, Khatkar MS, Raadsma HW (2009) A comparison of five methods to predict genomic breeding values of dairy bulls from genomewide SNP markers. Genet Sel Evol 31: 41:56.
    • (2009) Genet Sel Evol , vol.31 , Issue.41 , pp. 56
    • Moser, G.1    Tier, B.2    Crump, R.E.3    Khatkar, M.S.4    Raadsma, H.W.5
  • 10
    • 75649126894 scopus 로고    scopus 로고
    • Accuracy of genomic selection using stochastic search variable selection in Australian Holstein Friesian dairy cattle
    • Verbyla KL, Hayes BJ, Bowman PJ, Goddard ME (2009) Accuracy of genomic selection using stochastic search variable selection in Australian Holstein Friesian dairy cattle. Genet Res 91: 307-11.
    • (2009) Genet Res , vol.91 , pp. 307-311
    • Verbyla, K.L.1    Hayes, B.J.2    Bowman, P.J.3    Goddard, M.E.4
  • 13
    • 2642532618 scopus 로고    scopus 로고
    • Spotlight on spotted mice: A review of white spotting mouse mutants and associated human pigmentation disorders
    • Baxter LL, Hou L, Loftus SK, Pavan WJ (2004) Spotlight on spotted mice: a review of white spotting mouse mutants and associated human pigmentation disorders. Pigment Cell Res 17: 215-224.
    • (2004) Pigment Cell Res , vol.17 , pp. 215-224
    • Baxter, L.L.1    Hou, L.2    Loftus, S.K.3    Pavan, W.J.4
  • 14
    • 39049123708 scopus 로고    scopus 로고
    • A chromosome inversion near the KIT gene and the Tobiano spotting pattern in horses
    • Brooks SA, Lear TL, Adelson DL, Bailey E (2007) A chromosome inversion near the KIT gene and the Tobiano spotting pattern in horses. Cytogenet Genome Res 119: 225-30.
    • (2007) Cytogenet Genome Res , vol.119 , pp. 225-230
    • Brooks, S.A.1    Lear, T.L.2    Adelson, D.L.3    Bailey, E.4
  • 15
    • 69949166667 scopus 로고    scopus 로고
    • Seven novel KIT mutations in horses with white coat colour phenotypes
    • Haase B, Brooks SA, Tozaki T, Burger D, Poncet PA, et al. (2009) Seven novel KIT mutations in horses with white coat colour phenotypes. Anim Genet 40: 623-629.
    • (2009) Anim Genet , vol.40 , pp. 623-629
    • Haase, B.1    Brooks, S.A.2    Tozaki, T.3    Burger, D.4    Poncet, P.A.5
  • 16
    • 0032806006 scopus 로고    scopus 로고
    • Close association between sequence polymorphism in the KIT gene and the roan coat color in horses
    • Marklund S, Moller M, Sandberg K, Andersson L (1999) Close association between sequence polymorphism in the KIT gene and the roan coat color in horses. Mamm Genome 10: 283-288.
    • (1999) Mamm Genome , vol.10 , pp. 283-288
    • Marklund, S.1    Moller, M.2    Sandberg, K.3    Andersson, L.4
  • 17
    • 0030281363 scopus 로고    scopus 로고
    • Pigs with the dominant white coat color phenotype carry a duplication of the KIT gene encoding the mast/stem cell growth factor receptor
    • Johansson Moller M, Chaudhary R, Hellmén E, Höyheim B, Chowdhary B, et al. (1996) Pigs with the dominant white coat color phenotype carry a duplication of the KIT gene encoding the mast/stem cell growth factor receptor. Mamm Genome 7: 822-830.
    • (1996) Mamm Genome , vol.7 , pp. 822-830
    • Johansson Moller, M.1    Chaudhary, R.2    Hellmén, E.3    Höyheim, B.4    Chowdhary, B.5
  • 18
    • 70449348347 scopus 로고    scopus 로고
    • Genome scan for the degree of white spotting in dairy cattle
    • 19531114
    • Liu L, Harris B, Keehan M, Zhang Y (2009) Genome scan for the degree of white spotting in dairy cattle. Anim Genet PMID: 19531114.
    • (2009) Anim Genet PMID
    • Liu, L.1    Harris, B.2    Keehan, M.3    Zhang, Y.4
  • 20
    • 77953895118 scopus 로고    scopus 로고
    • A validated genome wide association study in two dairy cattle breeds for milk production and fertility traits using variable length haplotypes
    • In Press
    • Pryce JE, Bolormaa S, Chamberlain AJ, Bowman PJ, Savin K, et al. (2010) A validated genome wide association study in two dairy cattle breeds for milk production and fertility traits using variable length haplotypes. J Dairy Sci. In Press.
    • (2010) J Dairy Sci
    • Pryce, J.E.1    Bolormaa, S.2    Chamberlain, A.J.3    Bowman, P.J.4    Savin, K.5
  • 21
    • 0036175484 scopus 로고    scopus 로고
    • Positional candidate cloning of a QTL in dairy cattle: Identification of a missense mutation in the bovine DGAT1 gene with major effect on milk yield and composition
    • Grisart B, Coppieters W, Farnir F, Karim L, Ford C, et al. (2002) Positional candidate cloning of a QTL in dairy cattle: Identification of a missense mutation in the bovine DGAT1 gene with major effect on milk yield and composition. Genome Res 12: 222-231.
    • (2002) Genome Res , vol.12 , pp. 222-231
    • Grisart, B.1    Coppieters, W.2    Farnir, F.3    Karim, L.4    Ford, C.5
  • 22
    • 0035800736 scopus 로고    scopus 로고
    • Specific Pax-6/ microphthalmia transcription factor interactions involve their DNA-binding domains and inhibit transcriptional properties of both proteins
    • Planque N, Leconte L, Coquelle FM, Martin P, Saule S (2001) Specific Pax-6/ microphthalmia transcription factor interactions involve their DNA-binding domains and inhibit transcriptional properties of both proteins. J Biol Chem 276: 29330-2337.
    • (2001) J Biol Chem , vol.276 , pp. 29330-22337
    • Planque, N.1    Leconte, L.2    Coquelle, F.M.3    Martin, P.4    Saule, S.5
  • 23
    • 0344731080 scopus 로고    scopus 로고
    • Crystal structure of the human Pax6 paired domain-DNA complex reveals specific roles for the linker region and carboxy-terminal subdomain in DNA binding
    • Xu HE, Rould MA, Xu W, Epstein JA, Maas RL, et al. (1999) Crystal structure of the human Pax6 paired domain-DNA complex reveals specific roles for the linker region and carboxy-terminal subdomain in DNA binding. Genes Dev 13: 1263-1275.
    • (1999) Genes Dev , vol.13 , pp. 1263-1275
    • Xu, H.E.1    Rould, M.A.2    Xu, W.3    Epstein, J.A.4    Maas, R.L.5
  • 24
    • 65449132092 scopus 로고    scopus 로고
    • Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds
    • The bovine hapmap consortium
    • The bovine hapmap consortium (2009) Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds. Science 324: 528-532.
    • (2009) Science , vol.324 , pp. 528-532
  • 25
    • 0035045051 scopus 로고    scopus 로고
    • Prediction of total genetic value using genome wide dense marker maps
    • Meuwissen THE, Hayes BJ, Goddard ME (2001) Prediction of total genetic value using genome wide dense marker maps. Genetics 157: 1819-1829.
    • (2001) Genetics , vol.157 , pp. 1819-1829
    • Meuwissen, T.H.E.1    Hayes, B.J.2    Goddard, M.E.3
  • 26
    • 58149333712 scopus 로고    scopus 로고
    • Predicting type 2 diabetes based on polymorphisms from genome-wide association studies: A population-based study
    • van Hoek M, Dehghan A, Witteman JC, van Duijn CM, Uitterlinden AG, et al. (2008) Predicting type 2 diabetes based on polymorphisms from genome-wide association studies: a population-based study. Diabetes 57: 3122-8.
    • (2008) Diabetes , vol.57 , pp. 3122-3128
    • van Hoek, M.1    Dehghan, A.2    Witteman, J.C.3    van Duijn, C.M.4    Uitterlinden, A.G.5
  • 27
    • 55549147191 scopus 로고    scopus 로고
    • Personal genomes: The case of the missing heritability
    • Maher B (2008) Personal genomes: The case of the missing heritability. Nature 456: 18-21.
    • (2008) Nature , vol.456 , pp. 18-21
    • Maher, B.1
  • 28
    • 76549092570 scopus 로고    scopus 로고
    • Evolution in health and medicine Sackler colloquium: Genetic architecture of a complex trait and its implications for fitness and genome-wide association studies
    • Eyre-Walker A (2010) Evolution in health and medicine Sackler colloquium: Genetic architecture of a complex trait and its implications for fitness and genome-wide association studies. Proc Natl Acad Sci U S A 26: 107 Suppl 1: 1752-6.
    • (2010) Proc Natl Acad Sci U S A , vol.26 , Issue.107 SUPPL. 1 , pp. 1752-1756
    • Eyre-Walker, A.1
  • 29
    • 0034957069 scopus 로고    scopus 로고
    • The distribution of the effects of genes affecting quantitative traits in livestock
    • Hayes BJ, Goddard ME (2001) The distribution of the effects of genes affecting quantitative traits in livestock. Genet Sel Evol 33: 209-229.
    • (2001) Genet Sel Evol , vol.33 , pp. 209-229
    • Hayes, B.J.1    Goddard, M.E.2
  • 30
    • 35548956799 scopus 로고    scopus 로고
    • The number of loci that affect milk production traits in dairy cattle
    • Chamberlain AJ, McPartlan HC, Goddard ME (2007) The number of loci that affect milk production traits in dairy cattle. Genetics 177: 1117-1123.
    • (2007) Genetics , vol.177 , pp. 1117-1123
    • Chamberlain, A.J.1    McPartlan, H.C.2    Goddard, M.E.3
  • 31
    • 67651107321 scopus 로고    scopus 로고
    • Development and characterization of a high density SNP genotyping assay for cattle
    • doi:10.1371/journal.pone.0005350
    • Matukumalli LK, Lawley CT, Schnabel RD, Taylor JF, Allan MF, et al. (2009) Development and characterization of a high density SNP genotyping assay for cattle. PLoS ONE 4: e5350. doi:10.1371/journal.pone.0005350.
    • (2009) PLoS ONE , vol.4
    • Matukumalli, L.K.1    Lawley, C.T.2    Schnabel, R.D.3    Taylor, J.F.4    Allan, M.F.5
  • 32
    • 33644974019 scopus 로고    scopus 로고
    • A fast and flexible statistical model for large-scale population genotype data: Applications to inferring missing genotypes and haplotypic phase
    • Scheet P, Stephens MA (2006) A fast and flexible statistical model for large-scale population genotype data: Applications to inferring missing genotypes and haplotypic phase. Am J Hum Genet 78: 629-644.
    • (2006) Am J Hum Genet , vol.78 , pp. 629-644
    • Scheet, P.1    Stephens, M.A.2
  • 34
    • 0031179185 scopus 로고    scopus 로고
    • Effect of total allelic relationship on accuracy of evaluation and response to selection
    • Nejati-Javaremi A, Smith C, Gibson J (1997) Effect of total allelic relationship on accuracy of evaluation and response to selection. Journal of Animal Science 75: 1738-1745.
    • (1997) Journal of Animal Science , vol.75 , pp. 1738-1745
    • Nejati-Javaremi, A.1    Smith, C.2    Gibson, J.3
  • 35
    • 33645991808 scopus 로고    scopus 로고
    • Benefits from marker-assisted selection under an additive polygenic genetic model
    • Villanueva B, Pong-Wong R, Fernandez J, Toro MA (2005) Benefits from marker-assisted selection under an additive polygenic genetic model. Journal of Animal Science 83: 1747-1752.
    • (2005) Journal of Animal Science , vol.83 , pp. 1747-1752
    • Villanueva, B.1    Pong-Wong, R.2    Fernandez, J.3    Toro, M.A.4
  • 36
    • 37249083895 scopus 로고    scopus 로고
    • The impact of genetic relationship information on genome assisted breeding values
    • Habier D, Fernando RL, Dekkers JC (2007) The impact of genetic relationship information on genome assisted breeding values. Genetics 177: 2389-2397.
    • (2007) Genetics , vol.177 , pp. 2389-2397
    • Habier, D.1    Fernando, R.L.2    Dekkers, J.C.3
  • 37
    • 37249080410 scopus 로고    scopus 로고
    • Efficient estimation of breeding values from dense genomic data
    • Van Raden PM (2007) Efficient estimation of breeding values from dense genomic data. Journal of Dairy Science 90(Suppl. 1): 374-375.
    • (2007) Journal of Dairy Science , vol.90 , Issue.SUPPL. 1 , pp. 374-375
    • Van Raden, P.M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.