-
1
-
-
48249096806
-
Simultaneous Analysis of All SNPs in Genome-Wide and Re-Sequencing Association Studies
-
Hoggart CJ, Whittaker JC, De Iorio M, Balding DJ, (2008) Simultaneous Analysis of All SNPs in Genome-Wide and Re-Sequencing Association Studies. PLoS Genet 4.
-
(2008)
PLoS Genet
, vol.4
-
-
Hoggart, C.J.1
Whittaker, J.C.2
De Iorio, M.3
Balding, D.J.4
-
2
-
-
78649317608
-
Predicting genetic predisposition in humans: the promise of whole-genome markers
-
de los Campos G, Gianola D, Allison DB, (2010) Predicting genetic predisposition in humans: the promise of whole-genome markers. Nat Rev Genet 11: 880–886. doi: 10.1038/nrg2898 21045869
-
(2010)
Nat Rev Genet
, vol.11
, pp. 880-886
-
-
de los Campos, G.1
Gianola, D.2
Allison, D.B.3
-
4
-
-
84875700256
-
Projecting the performance of risk prediction based on polygenic analyses of genome-wide association studies
-
Chatterjee N, Wheeler B, Sampson J, Hartge P, Chanock SJ, et al. (2013) Projecting the performance of risk prediction based on polygenic analyses of genome-wide association studies. Nat Genet 45: 400–405, 405e401–403. doi: 10.1038/ng.2579 23455638
-
(2013)
Nat Genet
, vol.45
, pp. 400-405
-
-
Chatterjee, N.1
Wheeler, B.2
Sampson, J.3
Hartge, P.4
Chanock, S.J.5
-
5
-
-
77954140531
-
Common SNPs explain a large proportion of the heritability for human height
-
Yang J, Benyamin B, McEvoy BP, Gordon S, Henders AK, et al. (2010) Common SNPs explain a large proportion of the heritability for human height. Nat Genet 42: 565–569. doi: 10.1038/ng.608 20562875
-
(2010)
Nat Genet
, vol.42
, pp. 565-569
-
-
Yang, J.1
Benyamin, B.2
McEvoy, B.P.3
Gordon, S.4
Henders, A.K.5
-
6
-
-
67349287476
-
Genomic selection: prediction of accuracy and maximisation of long term response
-
Goddard M, (2009) Genomic selection: prediction of accuracy and maximisation of long term response. Genetica 136: 245–257. doi: 10.1007/s10709-008-9308-0 18704696
-
(2009)
Genetica
, vol.136
, pp. 245-257
-
-
Goddard, M.1
-
7
-
-
84930366490
-
-
McLachlan GJ, Basford KE, (1988) Mixture models: inference and applications to clustering. New York, N.Y.: M. Dekker. xi, 253 p. p.
-
(1988)
, vol.xi
-
-
McLachlan, G.J.1
Basford, K.E.2
-
8
-
-
84862511727
-
Improving accuracy of genomic predictions within and between dairy cattle breeds with imputed high-density single nucleotide polymorphism panels
-
Erbe M, Hayes BJ, Matukumalli LK, Goswami S, Bowman PJ, et al. (2012) Improving accuracy of genomic predictions within and between dairy cattle breeds with imputed high-density single nucleotide polymorphism panels. J Dairy Sci 95: 4114–4129. doi: 10.3168/jds.2011-5019 22720968
-
(2012)
J Dairy Sci
, vol.95
, pp. 4114-4129
-
-
Erbe, M.1
Hayes, B.J.2
Matukumalli, L.K.3
Goswami, S.4
Bowman, P.J.5
-
9
-
-
84874783818
-
Polygenic Modeling with Bayesian Sparse Linear Mixed Models
-
Zhou X, Carbonetto P, Stephens M, (2013) Polygenic Modeling with Bayesian Sparse Linear Mixed Models. PLoS Genet 9.
-
(2013)
PLoS Genet
, vol.9
-
-
Zhou, X.1
Carbonetto, P.2
Stephens, M.3
-
10
-
-
78650856517
-
GCTA: a tool for genome-wide complex trait analysis
-
Yang J, Lee SH, Goddard ME, Visscher PM, (2011) GCTA: a tool for genome-wide complex trait analysis. Am J Hum Genet 88: 76–82. doi: 10.1016/j.ajhg.2010.11.011 21167468
-
(2011)
Am J Hum Genet
, vol.88
, pp. 76-82
-
-
Yang, J.1
Lee, S.H.2
Goddard, M.E.3
Visscher, P.M.4
-
11
-
-
79952489475
-
Estimating missing heritability for disease from genome-wide association studies
-
Lee SH, Wray NR, Goddard ME, Visscher PM, (2011) Estimating missing heritability for disease from genome-wide association studies. Am J Hum Genet 88: 294–305. doi: 10.1016/j.ajhg.2011.02.002 21376301
-
(2011)
Am J Hum Genet
, vol.88
, pp. 294-305
-
-
Lee, S.H.1
Wray, N.R.2
Goddard, M.E.3
Visscher, P.M.4
-
12
-
-
84880802650
-
Prediction of complex human traits using the genomic best linear unbiased predictor
-
de Los Campos G, Vazquez AI, Fernando R, Klimentidis YC, Sorensen D, (2013) Prediction of complex human traits using the genomic best linear unbiased predictor. PLoS Genet 9: e1003608. doi: 10.1371/journal.pgen.1003608 23874214
-
(2013)
PLoS Genet
, vol.9
, pp. e1003608
-
-
de Los Campos, G.1
Vazquez, A.I.2
Fernando, R.3
Klimentidis, Y.C.4
Sorensen, D.5
-
13
-
-
34548292504
-
PLINK: a tool set for whole-genome association and population-based linkage analyses
-
Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MA, et al. (2007) PLINK: a tool set for whole-genome association and population-based linkage analyses. Am J Hum Genet 81: 559–575. 17701901
-
(2007)
Am J Hum Genet
, vol.81
, pp. 559-575
-
-
Purcell, S.1
Neale, B.2
Todd-Brown, K.3
Thomas, L.4
Ferreira, M.A.5
-
14
-
-
84863003734
-
Genome-wide efficient mixed-model analysis for association studies
-
Zhou X, Stephens M, (2012) Genome-wide efficient mixed-model analysis for association studies. Nat Genet 44: 821–824. doi: 10.1038/ng.2310 22706312
-
(2012)
Nat Genet
, vol.44
, pp. 821-824
-
-
Zhou, X.1
Stephens, M.2
-
15
-
-
0035045051
-
Prediction of total genetic value using genome-wide dense marker maps
-
Meuwissen TH, Hayes BJ, Goddard ME, (2001) Prediction of total genetic value using genome-wide dense marker maps. Genetics 157: 1819–1829. 11290733
-
(2001)
Genetics
, vol.157
, pp. 1819-1829
-
-
Meuwissen, T.H.1
Hayes, B.J.2
Goddard, M.E.3
-
16
-
-
79956199958
-
Extension of the bayesian alphabet for genomic selection
-
Habier D, Fernando RL, Kizilkaya K, Garrick DJ, (2011) Extension of the bayesian alphabet for genomic selection. BMC Bioinformatics 12: 186. doi: 10.1186/1471-2105-12-186 21605355
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 186
-
-
Habier, D.1
Fernando, R.L.2
Kizilkaya, K.3
Garrick, D.J.4
-
17
-
-
84969213492
-
Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls
-
The Welcome Trust Case Control Consortium (2007) Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls. Nature 447: 661–678. 17554300
-
(2007)
Nature
, vol.447
, pp. 661-678
-
-
-
18
-
-
84870919039
-
Improved heritability estimation from genome-wide SNPs
-
Speed D, Hemani G, Johnson MR, Balding DJ, (2012) Improved heritability estimation from genome-wide SNPs. Am J Hum Genet 91: 1011–1021. doi: 10.1016/j.ajhg.2012.10.010 23217325
-
(2012)
Am J Hum Genet
, vol.91
, pp. 1011-1021
-
-
Speed, D.1
Hemani, G.2
Johnson, M.R.3
Balding, D.J.4
-
19
-
-
77956399066
-
Using the realized relationship matrix to disentangle confounding factors for the estimation of genetic variance components of complex traits
-
Lee SH, Goddard ME, Visscher PM, van der Werf JH, (2010) Using the realized relationship matrix to disentangle confounding factors for the estimation of genetic variance components of complex traits. Genet Sel Evol 42: 22. doi: 10.1186/1297-9686-42-22 20546624
-
(2010)
Genet Sel Evol
, vol.42
, pp. 22
-
-
Lee, S.H.1
Goddard, M.E.2
Visscher, P.M.3
van der Werf, J.H.4
-
20
-
-
69449102525
-
Harnessing the information contained within genome-wide association studies to improve individual prediction of complex disease risk
-
Evans DM, Visscher PM, Wray NR, (2009) Harnessing the information contained within genome-wide association studies to improve individual prediction of complex disease risk. Hum Mol Genet 18: 3525–3531. doi: 10.1093/hmg/ddp295 19553258
-
(2009)
Hum Mol Genet
, vol.18
, pp. 3525-3531
-
-
Evans, D.M.1
Visscher, P.M.2
Wray, N.R.3
-
21
-
-
77956385510
-
Risk prediction using genome-wide association studies
-
Kooperberg C, LeBlanc M, Obenchain V, (2010) Risk prediction using genome-wide association studies. Genet Epidemiol 34: 643–652. doi: 10.1002/gepi.20509 20842684
-
(2010)
Genet Epidemiol
, vol.34
, pp. 643-652
-
-
Kooperberg, C.1
LeBlanc, M.2
Obenchain, V.3
-
22
-
-
84872386959
-
Performance and robustness of penalized and unpenalized methods for genetic prediction of complex human disease
-
Abraham G, Kowalczyk A, Zobel J, Inouye M, (2013) Performance and robustness of penalized and unpenalized methods for genetic prediction of complex human disease. Genet Epidemiol 37: 184–195. doi: 10.1002/gepi.21698 23203348
-
(2013)
Genet Epidemiol
, vol.37
, pp. 184-195
-
-
Abraham, G.1
Kowalczyk, A.2
Zobel, J.3
Inouye, M.4
-
23
-
-
77649209124
-
The genetic interpretation of area under the ROC curve in genomic profiling
-
Wray NR, Yang J, Goddard ME, Visscher PM, (2010) The genetic interpretation of area under the ROC curve in genomic profiling. PLoS Genet 6: e1000864. doi: 10.1371/journal.pgen.1000864 20195508
-
(2010)
PLoS Genet
, vol.6
, pp. e1000864
-
-
Wray, N.R.1
Yang, J.2
Goddard, M.E.3
Visscher, P.M.4
-
24
-
-
73449129712
-
From disease association to risk assessment: an optimistic view from genome-wide association studies on type 1 diabetes
-
Wei Z, Wang K, Qu HQ, Zhang H, Bradfield J, et al. (2009) From disease association to risk assessment: an optimistic view from genome-wide association studies on type 1 diabetes. PLoS Genet 5: e1000678. doi: 10.1371/journal.pgen.1000678 19816555
-
(2009)
PLoS Genet
, vol.5
, pp. e1000678
-
-
Wei, Z.1
Wang, K.2
Qu, H.Q.3
Zhang, H.4
Bradfield, J.5
-
25
-
-
0036606954
-
Model choice in gene mapping: what and why
-
Sillanpaa MJ, Corander J, (2002) Model choice in gene mapping: what and why. Trends Genet 18: 301–307. 12044359
-
(2002)
Trends Genet
, vol.18
, pp. 301-307
-
-
Sillanpaa, M.J.1
Corander, J.2
-
26
-
-
0035889492
-
Variable selection and Bayesian model averaging in case-control studies
-
Viallefont V, Raftery AE, Richardson S, (2001) Variable selection and Bayesian model averaging in case-control studies. Stat Med 20: 3215–3230. 11746314
-
(2001)
Stat Med
, vol.20
, pp. 3215-3230
-
-
Viallefont, V.1
Raftery, A.E.2
Richardson, S.3
-
27
-
-
82955223524
-
Bayesian Variable Selection Regression for Genome-Wide Association Studies and Other Large-Scale Problems
-
Guan YT, Stephens M, (2011) Bayesian Variable Selection Regression for Genome-Wide Association Studies and Other Large-Scale Problems. Annals of Applied Statistics 5: 1780–1815.
-
(2011)
Annals of Applied Statistics
, vol.5
, pp. 1780-1815
-
-
Guan, Y.T.1
Stephens, M.2
-
28
-
-
84855309960
-
Bayesian variable selection in searching for additive and dominant effects in genome-wide data
-
Peltola T, Marttinen P, Jula A, Salomaa V, Perola M, et al. (2012) Bayesian variable selection in searching for additive and dominant effects in genome-wide data. PLoS One 7: e29115. doi: 10.1371/journal.pone.0029115 22235263
-
(2012)
PLoS One
, vol.7
, pp. e29115
-
-
Peltola, T.1
Marttinen, P.2
Jula, A.3
Salomaa, V.4
Perola, M.5
-
29
-
-
77955133892
-
Estimating Effects and Making Predictions from Genome-Wide Marker Data
-
Goddard ME, Wray NR, Verbyla K, Visscher PM, (2009) Estimating Effects and Making Predictions from Genome-Wide Marker Data. Statistical Science 24: 517–529.
-
(2009)
Statistical Science
, vol.24
, pp. 517-529
-
-
Goddard, M.E.1
Wray, N.R.2
Verbyla, K.3
Visscher, P.M.4
-
30
-
-
84876007072
-
Power and predictive accuracy of polygenic risk scores
-
Dudbridge F, (2013) Power and predictive accuracy of polygenic risk scores. PLoS Genet 9: e1003348. doi: 10.1371/journal.pgen.1003348 23555274
-
(2013)
PLoS Genet
, vol.9
, pp. e1003348
-
-
Dudbridge, F.1
-
31
-
-
0001118328
-
Heritability of Threshold Characters
-
Dempster ER, Lerner IM, (1950) Heritability of Threshold Characters. Genetics 35: 212–236. 17247344
-
(1950)
Genetics
, vol.35
, pp. 212-236
-
-
Dempster, E.R.1
Lerner, I.M.2
-
32
-
-
84898704177
-
Fast Genomic Predictions via Bayesian G-BLUP and Multilocus Models of Threshold Traits Including Censored Gaussian Data
-
Karkkainen HP, Sillanpaa MJ, (2013) Fast Genomic Predictions via Bayesian G-BLUP and Multilocus Models of Threshold Traits Including Censored Gaussian Data. G3 (Bethesda) 3: 1511–1523. doi: 10.1534/g3.113.007096 23821618
-
(2013)
G3 (Bethesda)
, vol.3
, pp. 1511-1523
-
-
Karkkainen, H.P.1
Sillanpaa, M.J.2
-
33
-
-
84930335114
-
-
Falconer DS, Mackay TFC, (1996) Introduction to quantitative genetics. Essex, England: Longman. xiii, 464 p. p.
-
(1996)
, vol.xiii
-
-
Falconer, D.S.1
Mackay, T.F.C.2
-
34
-
-
84862777863
-
Estimating the proportion of variation in susceptibility to schizophrenia captured by common SNPs
-
Lee SH, DeCandia TR, Ripke S, Yang J, Sullivan PF, et al. (2012) Estimating the proportion of variation in susceptibility to schizophrenia captured by common SNPs. Nat Genet 44: 247–250. doi: 10.1038/ng.1108 22344220
-
(2012)
Nat Genet
, vol.44
, pp. 247-250
-
-
Lee, S.H.1
DeCandia, T.R.2
Ripke, S.3
Yang, J.4
Sullivan, P.F.5
-
35
-
-
79957588287
-
Genome partitioning of genetic variation for complex traits using common SNPs
-
Yang J, Manolio TA, Pasquale LR, Boerwinkle E, Caporaso N, et al. (2011) Genome partitioning of genetic variation for complex traits using common SNPs. Nat Genet 43: 519–525. doi: 10.1038/ng.823 21552263
-
(2011)
Nat Genet
, vol.43
, pp. 519-525
-
-
Yang, J.1
Manolio, T.A.2
Pasquale, L.R.3
Boerwinkle, E.4
Caporaso, N.5
-
36
-
-
84873031286
-
Estimation and partitioning of polygenic variation captured by common SNPs for Alzheimer's disease, multiple sclerosis and endometriosis
-
Lee SH, Harold D, Nyholt DR, Goddard ME, Zondervan KT, et al. (2013) Estimation and partitioning of polygenic variation captured by common SNPs for Alzheimer's disease, multiple sclerosis and endometriosis. Hum Mol Genet 22: 832–841. doi: 10.1093/hmg/dds491 23193196
-
(2013)
Hum Mol Genet
, vol.22
, pp. 832-841
-
-
Lee, S.H.1
Harold, D.2
Nyholt, D.R.3
Goddard, M.E.4
Zondervan, K.T.5
-
37
-
-
84879743015
-
Priors in whole-genome regression: the bayesian alphabet returns
-
Gianola D, (2013) Priors in whole-genome regression: the bayesian alphabet returns. Genetics 194: 573–596. doi: 10.1534/genetics.113.151753 23636739
-
(2013)
Genetics
, vol.194
, pp. 573-596
-
-
Gianola, D.1
-
38
-
-
68449086236
-
Common polygenic variation contributes to risk of schizophrenia and bipolar disorder
-
Purcell SM, Wray NR, Stone JL, Visscher PM, O'Donovan MC, et al. (2009) Common polygenic variation contributes to risk of schizophrenia and bipolar disorder. Nature 460: 748–752. doi: 10.1038/nature08185 19571811
-
(2009)
Nature
, vol.460
, pp. 748-752
-
-
Purcell, S.M.1
Wray, N.R.2
Stone, J.L.3
Visscher, P.M.4
O'Donovan, M.C.5
-
39
-
-
52949091164
-
Prediction of individual genetic risk of complex disease
-
Wray NR, Goddard ME, Visscher PM, (2008) Prediction of individual genetic risk of complex disease. Curr Opin Genet Dev 18: 257–263. doi: 10.1016/j.gde.2008.07.006 18682292
-
(2008)
Curr Opin Genet Dev
, vol.18
, pp. 257-263
-
-
Wray, N.R.1
Goddard, M.E.2
Visscher, P.M.3
-
40
-
-
79959524146
-
A haplotype map of the human genome
-
International HapMap Consortium (2005) A haplotype map of the human genome. Nature 437: 1299–1320. 16255080
-
(2005)
Nature
, vol.437
, pp. 1299-1320
-
-
-
41
-
-
84857460221
-
Characterizing linkage disequilibrium and evaluating imputation power of human genomic insertion-deletion polymorphisms
-
Lu JT, Wang Y, Gibbs RA, Yu F, (2012) Characterizing linkage disequilibrium and evaluating imputation power of human genomic insertion-deletion polymorphisms. Genome Biol 13: R15. doi: 10.1186/gb-2012-13-2-r15 22377349
-
(2012)
Genome Biol
, vol.13
, pp. R15
-
-
Lu, J.T.1
Wang, Y.2
Gibbs, R.A.3
Yu, F.4
-
42
-
-
77958045362
-
Genomic selection and complex trait prediction using a fast EM algorithm applied to genome-wide markers
-
Shepherd RK, Meuwissen TH, Woolliams JA, (2010) Genomic selection and complex trait prediction using a fast EM algorithm applied to genome-wide markers. BMC Bioinformatics 11: 529. doi: 10.1186/1471-2105-11-529 20969788
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 529
-
-
Shepherd, R.K.1
Meuwissen, T.H.2
Woolliams, J.A.3
-
43
-
-
84860333083
-
Bayesian inference analyses of the polygenic architecture of rheumatoid arthritis
-
Stahl EA, Wegmann D, Trynka G, Gutierrez-Achury J, Do R, et al. (2012) Bayesian inference analyses of the polygenic architecture of rheumatoid arthritis. Nat Genet 44: 483–489. doi: 10.1038/ng.2232 22446960
-
(2012)
Nat Genet
, vol.44
, pp. 483-489
-
-
Stahl, E.A.1
Wegmann, D.2
Trynka, G.3
Gutierrez-Achury, J.4
Do, R.5
-
44
-
-
84871928875
-
Genome position specific priors for genomic prediction
-
Brondum RF, Su G, Lund MS, Bowman PJ, Goddard ME, et al. (2012) Genome position specific priors for genomic prediction. BMC Genomics 13: 543. doi: 10.1186/1471-2164-13-543 23050763
-
(2012)
BMC Genomics
, vol.13
, pp. 543
-
-
Brondum, R.F.1
Su, G.2
Lund, M.S.3
Bowman, P.J.4
Goddard, M.E.5
-
45
-
-
84879540299
-
Leveraging Prior Information to Detect Causal Variants via Multi-Variant Regression
-
Long N, Dickson SP, Maia JM, Kim HS, Zhu Q, et al. (2013) Leveraging Prior Information to Detect Causal Variants via Multi-Variant Regression. PLoS Comput Biol 9: e1003093. doi: 10.1371/journal.pcbi.1003093 23762022
-
(2013)
PLoS Comput Biol
, vol.9
, pp. e1003093
-
-
Long, N.1
Dickson, S.P.2
Maia, J.M.3
Kim, H.S.4
Zhu, Q.5
-
46
-
-
77955482663
-
Accurate prediction of genetic values for complex traits by whole-genome resequencing
-
Meuwissen T, Goddard M, (2010) Accurate prediction of genetic values for complex traits by whole-genome resequencing. Genetics 185: 623–631. doi: 10.1534/genetics.110.116590 20308278
-
(2010)
Genetics
, vol.185
, pp. 623-631
-
-
Meuwissen, T.1
Goddard, M.2
|