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Volumn 24, Issue 9, 2014, Pages 1550-1557

MultiBLUP: Improved SNP-based prediction for complex traits

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL EXPERIMENT; ARTICLE; BIPOLAR DISORDER; BREEDING; CELIAC DISEASE; COMPARATIVE STUDY; CONTROLLED STUDY; CORONARY ARTERY DISEASE; CROHN DISEASE; EFFECT SIZE; GENETIC ANALYSIS; GENETIC ASSOCIATION; GENETIC RISK; GENETIC SCREENING; HUMAN; HYPERTENSION; INFLAMMATORY BOWEL DISEASE; INSULIN DEPENDENT DIABETES MELLITUS; MAJOR CLINICAL STUDY; MATHEMATICAL MODEL; MOUSE; MULTI BEST LINEAR UNBIASED PREDICTION; NON INSULIN DEPENDENT DIABETES MELLITUS; NONHUMAN; PEDIGREE; PHENOTYPIC VARIATION; PLANT; PREDICTION; QUANTITATIVE TRAIT; RHEUMATOID ARTHRITIS; SINGLE NUCLEOTIDE POLYMORPHISM; ALGORITHM; ANIMAL; BIOLOGICAL MODEL;

EID: 84907223324     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.169375.113     Document Type: Article
Times cited : (204)

References (41)
  • 1
    • 84975742565 scopus 로고    scopus 로고
    • A map of human genome variation from population-scale sequencing
    • The 1000 Genomes Project Consortium.
    • The 1000 Genomes Project Consortium. 2010. A map of human genome variation from population-scale sequencing. Nature 467: 1061-1073.
    • (2010) Nature , vol.467 , pp. 1061-1073
  • 2
    • 84901726217 scopus 로고    scopus 로고
    • Accurate and robust genomic prediction of celiac disease using statistical learning
    • Abraham G, Tye-Din J, Bhalala O, Kowalczyk A, Zobel J, Inouye M. 2014. Accurate and robust genomic prediction of celiac disease using statistical learning. PLoS Genet 10: e1004137.
    • (2014) PLoS Genet , vol.10 , pp. e1004137
    • Abraham, G.1    Tye-Din, J.2    Bhalala, O.3    Kowalczyk, A.4    Zobel, J.5    Inouye, M.6
  • 4
    • 77955166399 scopus 로고    scopus 로고
    • Population structure and cryptic relatedness in genetic association studies
    • Astle W, Balding D. 2009. Population structure and cryptic relatedness in genetic association studies. Stat Sci 24: 451-471.
    • (2009) Stat Sci , vol.24 , pp. 451-471
    • Astle, W.1    Balding, D.2
  • 5
    • 77953920566 scopus 로고    scopus 로고
    • Pathway analysis comparison using Crohn's disease genome wide association studies
    • Ballard D, Abraham C, Cho J, Zhao H. 2010. Pathway analysis comparison using Crohn's disease genome wide association studies. BMC Med Genomics 3: 25.
    • (2010) BMC Med Genomics , vol.3 , pp. 25
    • Ballard, D.1    Abraham, C.2    Cho, J.3    Zhao, H.4
  • 6
    • 0016919827 scopus 로고
    • Restricted maximum likelihood (REML) estimation of variance components in the mixed model
    • Corbeil R, Searle S. 1976. Restricted maximum likelihood (REML) estimation of variance components in the mixed model. Technometrics 18: 31-38.
    • (1976) Technometrics , vol.18 , pp. 31-38
    • Corbeil, R.1    Searle, S.2
  • 8
    • 84876390765 scopus 로고    scopus 로고
    • Whole genome regression and prediction methods applied to plant and animal breeding
    • De Los Campos G.,Hickey J,Pong-Wong R.,Daetwyler H. 2013 Whole genome regression and prediction methods applied to plant and animal breeding. Genetics 193: 327-345
    • (2013) Genetics , vol.193 , pp. 327-345
    • De Los Campos, G.1    Hickey, J.2    Pong-Wong, R.3    Daetwyler, H.4
  • 9
    • 0001118328 scopus 로고
    • Heritability of threshold characters
    • Dempster E, Lerner I. 1950. Heritability of threshold characters. Genetics 35: 212-236.
    • (1950) Genetics , vol.35 , pp. 212-236
    • Dempster, E.1    Lerner, I.2
  • 12
    • 0029564551 scopus 로고
    • Average information REML: An efficient algorithm for variance parameter estimation in linear mixed models
    • Gilmour A, Thompson R, Cullis B. 1995. Average information REML: an efficient algorithm for variance parameter estimation in linear mixed models. Biometrics 51: 1440-1450.
    • (1995) Biometrics , vol.51 , pp. 1440-1450
    • Gilmour, A.1    Thompson, R.2    Cullis, B.3
  • 13
    • 36849004453 scopus 로고    scopus 로고
    • Estimation of genetic parameters
    • Goddard M, Hayes B. 2007. Estimation of genetic parameters. J Anim Breed Genet 124: 323-330.
    • (2007) J Anim Breed Genet , vol.124 , pp. 323-330
    • Goddard, M.1    Hayes, B.2
  • 14
    • 84870437175 scopus 로고    scopus 로고
    • Advanced complex trait analysis
    • Gray A, Stewart I, Tenesa A. 2012. Advanced complex trait analysis. Bioinformatics 28: 3134-3136.
    • (2012) Bioinformatics , vol.28 , pp. 3134-3136
    • Gray, A.1    Stewart, I.2    Tenesa, A.3
  • 16
    • 59349098163 scopus 로고    scopus 로고
    • Genomic selection in dairy cattle: Progress and challenges
    • Hayes B, Bowman P, Chamberlain A, Goddard M. 2009. Genomic selection in dairy cattle: progress and challenges. J Dairy Sci 92: 433-443.
    • (2009) J Dairy Sci , vol.92 , pp. 433-443
    • Hayes, B.1    Bowman, P.2    Chamberlain, A.3    Goddard, M.4
  • 17
    • 0000563391 scopus 로고
    • Estimation of genetic parameters
    • Henderson C. 1950. Estimation of genetic parameters. Ann Math Stat 21: 309-310.
    • (1950) Ann Math Stat , vol.21 , pp. 309-310
    • Henderson, C.1
  • 18
    • 0001198091 scopus 로고
    • The estimation of environmental and genetic trends from records subject to culling
    • Henderson C, Kempthorne O, Searle S, von Krosigk C. 1959. The estimation of environmental and genetic trends from records subject to culling. Biometrics 15: 192-218.
    • (1959) Biometrics , vol.15 , pp. 192-218
    • Henderson, C.1    Kempthorne, O.2    Searle, S.3    Von Krosigk, C.4
  • 19
    • 84863845193 scopus 로고    scopus 로고
    • Genotype imputation with thousands of genomes
    • Howie B, Marchini J, Stephens M. 2011. Genotype imputation with thousands of genomes. G3 (Bethesda) 1: 457-470.
    • (2011) G3 (Bethesda) , vol.1 , pp. 457-470
    • Howie, B.1    Marchini, J.2    Stephens, M.3
  • 22
    • 79959503826 scopus 로고    scopus 로고
    • The international hap map project
    • The International HapMap Consortium.
    • The International HapMap Consortium. 2003. The International HapMap Project. Nature 426: 789-796.
    • (2003) Nature , vol.426 , pp. 789-796
  • 23
    • 68449086236 scopus 로고    scopus 로고
    • Common polygenic variation contributes to risk of schizophrenia and bipolar disorder
    • The International Schizophrenia Consortium.
    • The International Schizophrenia Consortium. 2009. Common polygenic variation contributes to risk of schizophrenia and bipolar disorder. Nature 460: 748-752.
    • (2009) Nature , vol.460 , pp. 748-752
  • 24
    • 82755175640 scopus 로고    scopus 로고
    • Genetic risk prediction in complex disease
    • Jostins L, Barrett J. 2011. Genetic risk prediction in complex disease. Hum Mol Genet 20: R182-R188.
    • (2011) Hum Mol Genet , vol.20 , pp. R182-R188
    • Jostins, L.1    Barrett, J.2
  • 25
    • 30444435351 scopus 로고    scopus 로고
    • An efficient variance component approach implementing an average information REML suitable for combined LD and linkage mapping with a general complex pedigree
    • Lee S, van der Werf J. 2006. An efficient variance component approach implementing an average information REML suitable for combined LD and linkage mapping with a general complex pedigree. Genet Sel Evol 38: 25-43.
    • (2006) Genet Sel Evol , vol.38 , pp. 25-43
    • Lee, S.1    Van Der Werf, J.2
  • 29
    • 0035045051 scopus 로고    scopus 로고
    • Prediction of total genetic value using genome-wide dense marker maps
    • Meuwissen T, Hayes B, Goddard M. 2001. Prediction of total genetic value using genome-wide dense marker maps. Genetics 157: 1819-1829.
    • (2001) Genetics , vol.157 , pp. 1819-1829
    • Meuwissen, T.1    Hayes, B.2    Goddard, M.3
  • 33
    • 84881506352 scopus 로고    scopus 로고
    • Improving the efficiency of genomic selection
    • Scutari M, Mackay I, Balding D. 2013. Improving the efficiency of genomic selection. Stat Appl Genet Mol 12: 517-527.
    • (2013) Stat Appl Genet Mol , vol.12 , pp. 517-527
    • Scutari, M.1    Mackay, I.2    Balding, D.3
  • 36
    • 84969213492 scopus 로고    scopus 로고
    • Genome-wide association study of 14, 000 cases of seven common diseases and 3, 000 shared controls
    • The Wellcome Trust Case Control Consortium
    • The Wellcome Trust Case Control Consortium. 2007. Genome-wide association study of 14, 000 cases of seven common diseases and 3, 000 shared controls. Nature 447: 661-678.
    • (2007) Nature , vol.447 , pp. 661-678
  • 37
    • 34948877698 scopus 로고    scopus 로고
    • Prediction of individual genetic risk to disease from genome-wide association studies
    • Wray N, Goddard M, Visscher P. 2007. Prediction of individual genetic risk to disease from genome-wide association studies. Genome Res 17: 1520-1528.
    • (2007) Genome Res , vol.17 , pp. 1520-1528
    • Wray, N.1    Goddard, M.2    Visscher, P.3
  • 39
    • 78650856517 scopus 로고    scopus 로고
    • GCTA: A tool for genome-wide complex trait analysis
    • Yang J, Lee S, Goddard M, Visscher P. 2011a. GCTA: a tool for genome-wide complex trait analysis. Am J Hum Genet 88: 76-82.
    • (2011) Am J Hum Genet , vol.88 , pp. 76-82
    • Yang, J.1    Lee, S.2    Goddard, M.3    Visscher, P.4
  • 41
    • 84874783818 scopus 로고    scopus 로고
    • Polygeneic modeling with Bayesian sparse linear mixed models
    • Zhou X, Carbonetto P, Stephens M. 2013. Polygeneic modeling with Bayesian sparse linear mixed models. PLoS Genet 9: e1003264.
    • (2013) PLoS Genet , vol.9 , pp. e1003264
    • Zhou, X.1    Carbonetto, P.2    Stephens, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.