-
1
-
-
84872519378
-
Hybridization and speciation
-
Abbott, R., Albach, D., Ansell, S., Arntzen, J. W., Baird, S. J. E., Bierne, N., … Zinner, D. (2013). Hybridization and speciation. Journal of Evolutionary Biology, 26, 229–246.
-
(2013)
Journal of Evolutionary Biology
, vol.26
, pp. 229-246
-
-
Abbott, R.1
Albach, D.2
Ansell, S.3
Arntzen, J.W.4
Baird, S.J.E.5
Bierne, N.6
Zinner, D.7
-
2
-
-
84859636918
-
A fine-scale chimpanzee genetic map from population sequencing
-
Auton, A., Adi, F. A., Pfeifer, S., Venn, O., Ségurel, L., Street, T., … McVean, G. (2012). A fine-scale chimpanzee genetic map from population sequencing. Science, 336, 193–198.
-
(2012)
Science
, vol.336
, pp. 193-198
-
-
Auton, A.1
Adi, F.A.2
Pfeifer, S.3
Venn, O.4
Ségurel, L.5
Street, T.6
McVean, G.7
-
3
-
-
77950628781
-
The recombination landscape of the zebra finch Taeniopygia Guttata genome
-
Backström, N., Forstmeier, W., Schielzeth, H., Mellenius, H., Nam, K., Bolund, E., … Ellegren, H. (2010). The recombination landscape of the zebra finch Taeniopygia Guttata genome. Genome Research, 20, 485–495.
-
(2010)
Genome Research
, vol.20
, pp. 485-495
-
-
Backström, N.1
Forstmeier, W.2
Schielzeth, H.3
Mellenius, H.4
Nam, K.5
Bolund, E.6
Ellegren, H.7
-
4
-
-
84915768067
-
Thinking too positive? Revisiting current methods of population genetic selection inference
-
Bank, C., Ewing, G. B., Ferrer-Admettla, A., Foll, M., & Jensen, J. D. (2014). Thinking too positive? Revisiting current methods of population genetic selection inference. Trends in Genetics, 30, 540–546.
-
(2014)
Trends in Genetics
, vol.30
, pp. 540-546
-
-
Bank, C.1
Ewing, G.B.2
Ferrer-Admettla, A.3
Foll, M.4
Jensen, J.D.5
-
5
-
-
0001392664
-
Multilocus clines
-
Barton, N. H. (1983). Multilocus clines. Evolution, 37, 454–471.
-
(1983)
Evolution
, vol.37
, pp. 454-471
-
-
Barton, N.H.1
-
6
-
-
84966160759
-
The barrier to genetic exchange between hybridising populations
-
Barton, N. H., & Bengtsson, B. O. (1986). The barrier to genetic exchange between hybridising populations. Heredity, 57, 357–376.
-
(1986)
Heredity
, vol.57
, pp. 357-376
-
-
Barton, N.H.1
Bengtsson, B.O.2
-
7
-
-
84979619789
-
Recent demography drives changes in linked selection across the maize genome
-
Beissinger, T. M., Wang, L., Crossby, K., Durvasula, A., Hufford, M. B., & Ross-Ibarra, J. (2016). Recent demography drives changes in linked selection across the maize genome. Nature Plants, 2, 16084.
-
(2016)
Nature Plants
, vol.2
, pp. 16084
-
-
Beissinger, T.M.1
Wang, L.2
Crossby, K.3
Durvasula, A.4
Hufford, M.B.5
Ross-Ibarra, J.6
-
8
-
-
2442590732
-
Single-generation estimates of individual fitness as proxies for long-term genetic contribution
-
Brommer, J. E., Gustafsson, L., Pietiäinen, H., & Merilä, J. (2004). Single-generation estimates of individual fitness as proxies for long-term genetic contribution. The American Naturalist, 163, 505–517.
-
(2004)
The American Naturalist
, vol.163
, pp. 505-517
-
-
Brommer, J.E.1
Gustafsson, L.2
Pietiäinen, H.3
Merilä, J.4
-
9
-
-
84946553571
-
Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum of Ficedula flycatchers
-
Burri, R., Nater, A., Kawakami, T., Mugal, C. F., Olason, P. I., Smeds, L., … Ellegren, H. (2015). Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum of Ficedula flycatchers. Genome Research, 25, 1656–1665.
-
(2015)
Genome Research
, vol.25
, pp. 1656-1665
-
-
Burri, R.1
Nater, A.2
Kawakami, T.3
Mugal, C.F.4
Olason, P.I.5
Smeds, L.6
Ellegren, H.7
-
10
-
-
84925548066
-
The genomic architecture of population divergence between subspecies of the European rabbit
-
Carneiro, M., Albert, F. W., Afonso, S., Pereira, R. J., Burbano, H., Campos, R., … Ferrand, N. (2014). The genomic architecture of population divergence between subspecies of the European rabbit. PLOS Genetics, 10, e1003519.
-
(2014)
PLOS Genetics
, vol.10
-
-
Carneiro, M.1
Albert, F.W.2
Afonso, S.3
Pereira, R.J.4
Burbano, H.5
Campos, R.6
Ferrand, N.7
-
11
-
-
62449199004
-
Recombination and speciation: Loci near centromeres are more differentiated than loci near telomeres between subspecies of the European rabbit (Oryctolagus cuniculus)
-
Carneiro, M., Nuno, F., & Nachman, M. W. (2009). Recombination and speciation: Loci near centromeres are more differentiated than loci near telomeres between subspecies of the European rabbit (Oryctolagus cuniculus). Genetics, 181, 593–606.
-
(2009)
Genetics
, vol.181
, pp. 593-606
-
-
Carneiro, M.1
Nuno, F.2
Nachman, M.W.3
-
12
-
-
84872036603
-
Genome-wide fine-scale recombination rate variation in Drosophila melanogaster
-
Chan, A. H., Jenkins, P. A., & Song, Y. S. (2012). Genome-wide fine-scale recombination rate variation in Drosophila melanogaster. PLOS Genetics, 8, e1003090.
-
(2012)
PLOS Genetics
, vol.8
-
-
Chan, A.H.1
Jenkins, P.A.2
Song, Y.S.3
-
13
-
-
0028222304
-
The effect of background selection against deleterious mutations on weakly selected, linked variants
-
Charlesworth, B. (1994). The effect of background selection against deleterious mutations on weakly selected, linked variants. Genetical Research, 63, 213–227.
-
(1994)
Genetical Research
, vol.63
, pp. 213-227
-
-
Charlesworth, B.1
-
14
-
-
0031901554
-
Measures of divergence between populations and the effect of forces that reduce variability
-
Charlesworth, B. (1998). Measures of divergence between populations and the effect of forces that reduce variability. Molecular Biology and Evolution, 15, 538–543.
-
(1998)
Molecular Biology and Evolution
, vol.15
, pp. 538-543
-
-
Charlesworth, B.1
-
15
-
-
0027305597
-
The effect of deleterious mutations on neutral molecular variation
-
Charlesworth, B., Morgan, M. T., & Charlesworth, D. (1993). The effect of deleterious mutations on neutral molecular variation. Genetics, 134, 1289–1303.
-
(1993)
Genetics
, vol.134
, pp. 1289-1303
-
-
Charlesworth, B.1
Morgan, M.T.2
Charlesworth, D.3
-
16
-
-
84975064982
-
Does linked selection explain the narrow range of genetic diversity across species?
-
042598
-
Coop, G. (2016). Does linked selection explain the narrow range of genetic diversity across species?. bioRxiv, 042598. https://doi.org/10.1101/042598
-
(2016)
bioRxiv
-
-
Coop, G.1
-
17
-
-
84929497425
-
Natural selection constrains neutral diversity across a wide range of species
-
Corbett-Detig, R. B., Hartl, D. L., & Sackton, T. B. (2015). Natural selection constrains neutral diversity across a wide range of species. PLoS Biology, 13, e1002112.
-
(2015)
PLoS Biology
, vol.13
-
-
Corbett-Detig, R.B.1
Hartl, D.L.2
Sackton, T.B.3
-
18
-
-
84903376433
-
Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow
-
Cruickshank, T. E., & Hahn, M. W. (2014). Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow. Molecular Ecology, 23, 3133–3157.
-
(2014)
Molecular Ecology
, vol.23
, pp. 3133-3157
-
-
Cruickshank, T.E.1
Hahn, M.W.2
-
19
-
-
84875230189
-
Genomic signatures of selection at linked sites: Unifying the disparity among species
-
Cutter, A. D., & Payseur, B. A. (2013). Genomic signatures of selection at linked sites: Unifying the disparity among species. Nature Reviews. Genetics, 14, 262–274.
-
(2013)
Nature Reviews. Genetics
, vol.14
, pp. 262-274
-
-
Cutter, A.D.1
Payseur, B.A.2
-
20
-
-
84926528889
-
Genomic analysis of a migratory divide reveals candidate genes for migration and implicates selective sweeps in generating Islands of differentiation
-
Delmore, K. E., Hübner, S., Kane, N. C., Schuster, R., Andrew, R. L., Câmara, F., … Irwin, D. E. (2015). Genomic analysis of a migratory divide reveals candidate genes for migration and implicates selective sweeps in generating Islands of differentiation. Molecular Ecology, 24, 1873–1888.
-
(2015)
Molecular Ecology
, vol.24
, pp. 1873-1888
-
-
Delmore, K.E.1
Hübner, S.2
Kane, N.C.3
Schuster, R.4
Andrew, R.L.5
Câmara, F.6
Irwin, D.E.7
-
21
-
-
79955483667
-
A framework for variation discovery and genotyping using next-generation DNA sequencing data
-
DePristo, M. A., Banks, E., Poplin, R., Garimella, K. V., Maguire, J. R., Hartl, C., … Daly, M. J. (2011). A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nature Genetics, 43, 491–498.
-
(2011)
Nature Genetics
, vol.43
, pp. 491-498
-
-
DePristo, M.A.1
Banks, E.2
Poplin, R.3
Garimella, K.V.4
Maguire, J.R.5
Hartl, C.6
Daly, M.J.7
-
22
-
-
34249875966
-
Incipient speciation by divergent adaptation and antagonistic Epistasis in yeast
-
Dettman, J. R., Sirjusingh, C., Kohn, L. M., & Anderson, J. B. (2007). Incipient speciation by divergent adaptation and antagonistic Epistasis in yeast. Nature, 447, 585–588.
-
(2007)
Nature
, vol.447
, pp. 585-588
-
-
Dettman, J.R.1
Sirjusingh, C.2
Kohn, L.M.3
Anderson, J.B.4
-
23
-
-
85012991893
-
Covariation in levels of nucleotide diversity in homologous regions of the avian genome long after completion of lineage sorting
-
Dutoit, L., Vijay, N., Mugal, C. F., Bossu, C. M., Burri, R., Wolf, J., & Ellegren, H. (2017). Covariation in levels of nucleotide diversity in homologous regions of the avian genome long after completion of lineage sorting. Proceedings of the Royal Society. Series B, 284, 20162756.
-
(2017)
Proceedings of the Royal Society. Series B
, vol.284
, pp. 20162756
-
-
Dutoit, L.1
Vijay, N.2
Mugal, C.F.3
Bossu, C.M.4
Burri, R.5
Wolf, J.6
Ellegren, H.7
-
24
-
-
77950630372
-
Evolutionary stasis: The stable chromosomes of birds
-
Ellegren, H. (2010). Evolutionary stasis: The stable chromosomes of birds. Trends in Ecology & Evolution, 25, 283–291.
-
(2010)
Trends in Ecology & Evolution
, vol.25
, pp. 283-291
-
-
Ellegren, H.1
-
26
-
-
84870297139
-
The genomic landscape of species divergence in Ficedula Flycatchers
-
Ellegren, H., Smeds, L., Burri, R., Olason, P. I., Backström, N., Kawakami, T., … Wolf, J. B. (2012). The genomic landscape of species divergence in Ficedula Flycatchers. Nature, 491, 756–760.
-
(2012)
Nature
, vol.491
, pp. 756-760
-
-
Ellegren, H.1
Smeds, L.2
Burri, R.3
Olason, P.I.4
Backström, N.5
Kawakami, T.6
Wolf, J.B.7
-
27
-
-
33745948556
-
Higher-level phylogeny and morphological evolution of Tyrant Flycatchers, Cotingas, Manakins, and Their allies (Aves: Tyrannida)
-
Ericson, P. G. P., Zuccon, D., Ohlson, J. I., Johansson, U. S., Alvarenga, H., & Prum, R. O. (2006). Higher-level phylogeny and morphological evolution of Tyrant Flycatchers, Cotingas, Manakins, and Their allies (Aves: Tyrannida). Molecular Phylogenetics and Evolution, 40, 471–483.
-
(2006)
Molecular Phylogenetics and Evolution
, vol.40
, pp. 471-483
-
-
Ericson, P.G.P.1
Zuccon, D.2
Ohlson, J.I.3
Johansson, U.S.4
Alvarenga, H.5
Prum, R.O.6
-
28
-
-
84954077710
-
The consequences of not accounting for background selection in demographic inference
-
Ewing, G. B., & Jensen, J. D. (2016). The consequences of not accounting for background selection in demographic inference. Molecular Ecology, 25, 135–141.
-
(2016)
Molecular Ecology
, vol.25
, pp. 135-141
-
-
Ewing, G.B.1
Jensen, J.D.2
-
29
-
-
34447546660
-
The distribution of fitness effects of new mutations
-
Eyre-Walker, A., & Keightley, P. D. (2007). The distribution of fitness effects of new mutations. Nature Reviews Genetics, 8, 610–618.
-
(2007)
Nature Reviews Genetics
, vol.8
, pp. 610-618
-
-
Eyre-Walker, A.1
Keightley, P.D.2
-
30
-
-
79955625454
-
Bayesian estimation of genomic clines
-
Gompert, Z., & Buerkle, C. A. (2011). Bayesian estimation of genomic clines. Molecular Ecology, 20, 2111–2127.
-
(2011)
Molecular Ecology
, vol.20
, pp. 2111-2127
-
-
Gompert, Z.1
Buerkle, C.A.2
-
31
-
-
14844359279
-
Hierfstat, a package for R to compute and test hierarchical F-statistics
-
Goudet, J. (2005). Hierfstat, a package for R to compute and test hierarchical F-statistics. Molecular Ecology Notes, 5, 184–186.
-
(2005)
Molecular Ecology Notes
, vol.5
, pp. 184-186
-
-
Goudet, J.1
-
32
-
-
0026615320
-
Hybridization of bird species
-
Grant, P. R., & Grant, B. R. (1992). Hybridization of bird species. Science, 256, 193–197.
-
(1992)
Science
, vol.256
, pp. 193-197
-
-
Grant, P.R.1
Grant, B.R.2
-
34
-
-
33644874573
-
The UCSC genome browser database: Update (2006)
-
Hinrichs, A. S., Karolchik, D., Baertsch, R., Barber, G. P., Bejerano, G., Clawson, H., … Kent, W. J. (2006). The UCSC genome browser database: Update (2006). Nucleic Acids Research, 34, D590–D598.
-
(2006)
Nucleic Acids Research
, vol.34
, pp. D590-D598
-
-
Hinrichs, A.S.1
Karolchik, D.2
Baertsch, R.3
Barber, G.P.4
Bejerano, G.5
Clawson, H.6
Kent, W.J.7
-
35
-
-
80054760378
-
Variation in the mutation rate across mammalian genomes
-
Hodgkinson, A., & Eyre-Walker, A. (2011). Variation in the mutation rate across mammalian genomes. Nature Reviews Genetics, 12, 756–766.
-
(2011)
Nature Reviews Genetics
, vol.12
, pp. 756-766
-
-
Hodgkinson, A.1
Eyre-Walker, A.2
-
36
-
-
84927912146
-
Rates of karyotypic evolution in Estrildid finches differ between island and continental clades
-
Hooper, D. M., & Price, T. D. (2015). Rates of karyotypic evolution in Estrildid finches differ between island and continental clades. Evolution, 69, 890–903.
-
(2015)
Evolution
, vol.69
, pp. 890-903
-
-
Hooper, D.M.1
Price, T.D.2
-
37
-
-
18444402182
-
The Ensembl genome database project
-
Hubbard, T. D., Barker, D., Birney, B. E., Cameron, G., Chen, Y., Clark, L., & … Clamp, M. (2002). The Ensembl genome database project. Nucleic Acids Research, 30, 38–41.
-
(2002)
Nucleic Acids Research
, vol.30
, pp. 38-41
-
-
Hubbard, T.D.1
Barker, D.2
Birney, B.E.3
Cameron, G.4
Chen, Y.5
Clark, L.6
Clamp, M.7
-
38
-
-
0036695118
-
Mathematical consequences of the genealogical species concept
-
Hudson, R. R., & Coyne, J. A. (2002). Mathematical consequences of the genealogical species concept. Evolution, 56, 1557–1565.
-
(2002)
Evolution
, vol.56
, pp. 1557-1565
-
-
Hudson, R.R.1
Coyne, J.A.2
-
39
-
-
84917708482
-
Whole-genome analyses resolve early branches in the tree of life of modern birds
-
Jarvis, E. D., Mirarab, S., Aberer, A. J., Li, B., Houde, P., Li, C., … Zhang, G. (2014). Whole-genome analyses resolve early branches in the tree of life of modern birds. Science, 346, 1320–1331.
-
(2014)
Science
, vol.346
, pp. 1320-1331
-
-
Jarvis, E.D.1
Mirarab, S.2
Aberer, A.J.3
Li, B.4
Houde, P.5
Li, C.6
Zhang, G.7
-
40
-
-
84869088692
-
The global diversity of birds in space and time
-
Jetz, W., Thomas, G. H., Joy, J. B., Hartmann, K., & Mooers, A. O. (2012). The global diversity of birds in space and time. Nature, 491, 444–448.
-
(2012)
Nature
, vol.491
, pp. 444-448
-
-
Jetz, W.1
Thomas, G.H.2
Joy, J.B.3
Hartmann, K.4
Mooers, A.O.5
-
41
-
-
84899923627
-
Global distribution and conservation of evolutionary distinctness in birds
-
Jetz, W., Thomas, G. H., Joy, J. B., Redding, D. W., Hartmann, K., & Mooers, A. O. (2014). Global distribution and conservation of evolutionary distinctness in birds. Current Biology, 24, 919–930.
-
(2014)
Current Biology
, vol.24
, pp. 919-930
-
-
Jetz, W.1
Thomas, G.H.2
Joy, J.B.3
Redding, D.W.4
Hartmann, K.5
Mooers, A.O.6
-
42
-
-
84941243095
-
A supermatrix phylogeny of Corvoid Passerine Birds (Aves: Corvides)
-
Part A
-
Jønsson, K. A., Fabrea, P. H., Kennedy, J. D., Holt, B. G., Borregaard, M. K., Rahbek, C., & Fjeldså, J. (2016). A supermatrix phylogeny of Corvoid Passerine Birds (Aves: Corvides). Molecular Phylogenetics and Evolution, 94, Part A: 87–94.
-
(2016)
Molecular Phylogenetics and Evolution, 94
, pp. 87-94
-
-
Jønsson, K.A.1
Fabrea, P.H.2
Kennedy, J.D.3
Holt, B.G.4
Borregaard, M.K.5
Rahbek, C.6
Fjeldså, J.7
-
43
-
-
85021792111
-
Whole-genome patterns of linkage disequilibrium across flycatcher populations clarify the causes and consequences of fine-scale recombination rate variation in Birds
-
Kawakami, T., Mugal, C. F., Suh, A., Nater, A., Burri, R., Smeds, L., & Ellegren, H. (2017). Whole-genome patterns of linkage disequilibrium across flycatcher populations clarify the causes and consequences of fine-scale recombination rate variation in Birds. Molecular Ecology, https://doi.org/10.1111/mec.14197.
-
(2017)
Molecular Ecology
-
-
Kawakami, T.1
Mugal, C.F.2
Suh, A.3
Nater, A.4
Burri, R.5
Smeds, L.6
Ellegren, H.7
-
44
-
-
84905465421
-
A high-density linkage map enables a second-generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution
-
Kawakami, T., Smeds, L., Backström, N., Husby, A., Qvarnström, A., Mugal, C. F., … Ellegren, H. (2014). A high-density linkage map enables a second-generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution. Molecular Ecology, 23, 4035–4058.
-
(2014)
Molecular Ecology
, vol.23
, pp. 4035-4058
-
-
Kawakami, T.1
Smeds, L.2
Backström, N.3
Husby, A.4
Qvarnström, A.5
Mugal, C.F.6
Ellegren, H.7
-
45
-
-
84949752843
-
Mapping centromeres of microchromosomes in the zebra finch (Taeniopygia Guttata) using half-tetrad analysis
-
Knief, U., & Forstmeier, W. (2016). Mapping centromeres of microchromosomes in the zebra finch (Taeniopygia Guttata) using half-tetrad analysis. Chromosoma, 125, 757–768.
-
(2016)
Chromosoma
, vol.125
, pp. 757-768
-
-
Knief, U.1
Forstmeier, W.2
-
46
-
-
84928993364
-
The functional basis of wing patterning in Heliconius butterflies: The molecules behind mimicry
-
Kronforst, M. R., & Papa, R. (2015). The functional basis of wing patterning in Heliconius butterflies: The molecules behind mimicry. Genetics, 200, 1–19.
-
(2015)
Genetics
, vol.200
, pp. 1-19
-
-
Kronforst, M.R.1
Papa, R.2
-
47
-
-
33846078622
-
The UCSC genome browser database: Update 2007
-
Kuhn, R. M., Karolchik, D., Zweig, A. S., Trumbower, H., Thomas, D. J., Thakkapallayil, A., … Kent, W. J. (2007). The UCSC genome browser database: Update 2007. Nucleic Acids Research, 35, D668–D673.
-
(2007)
Nucleic Acids Research
, vol.35
, pp. D668-D673
-
-
Kuhn, R.M.1
Karolchik, D.2
Zweig, A.S.3
Trumbower, H.4
Thomas, D.J.5
Thakkapallayil, A.6
Kent, W.J.7
-
48
-
-
84923353165
-
Evolution of Darwin's finches and their beaks revealed by genome sequencing
-
Lamichhaney, S., Berglund, J., Almén, M. S., Maqbool, K., Grabherr, M., Martinez-Barrio, A., … Andersson, L. (2015). Evolution of Darwin's finches and their beaks revealed by genome sequencing. Nature, 518, 371–375.
-
(2015)
Nature
, vol.518
, pp. 371-375
-
-
Lamichhaney, S.1
Berglund, J.2
Almén, M.S.3
Maqbool, K.4
Grabherr, M.5
Martinez-Barrio, A.6
Andersson, L.7
-
49
-
-
0015879546
-
Distribution of gene frequency as a test of the theory of the selective neutrality of polymorphisms
-
Lewontin, R. C., & Krakauer, J. (1973). Distribution of gene frequency as a test of the theory of the selective neutrality of polymorphisms. Genetics, 74, 175–195.
-
(1973)
Genetics
, vol.74
, pp. 175-195
-
-
Lewontin, R.C.1
Krakauer, J.2
-
50
-
-
33947277824
-
Natural hybridization in Heliconiine butterflies: The species boundary as a continuum
-
Mallet, J., Beltrán, M., Neukirchen, W., & Linares, M. (2007). Natural hybridization in Heliconiine butterflies: The species boundary as a continuum. BMC Evolutionary Biology, 7, 28.
-
(2007)
BMC Evolutionary Biology
, vol.7
, pp. 28
-
-
Mallet, J.1
Beltrán, M.2
Neukirchen, W.3
Linares, M.4
-
51
-
-
85016172201
-
Selective sweeps across twenty millions years of primate evolution
-
Munch, K., Nam, K., Schierup, M. H., & Mailund, T. (2016). Selective sweeps across twenty millions years of primate evolution. Molecular Biology and Evolution, 33, 3065–3074.
-
(2016)
Molecular Biology and Evolution
, vol.33
, pp. 3065-3074
-
-
Munch, K.1
Nam, K.2
Schierup, M.H.3
Mailund, T.4
-
52
-
-
84255162277
-
Recombination rate variation and speciation: Theoretical predictions and empirical results from rabbits and mice
-
Nachman, M. W., & Payseur, B. A. (2012). Recombination rate variation and speciation: Theoretical predictions and empirical results from rabbits and mice. Philosophical Transactions of the Royal Society of London Series B, Biological Sciences, 367, 409–421.
-
(2012)
Philosophical Transactions of the Royal Society of London Series B, Biological Sciences
, vol.367
, pp. 409-421
-
-
Nachman, M.W.1
Payseur, B.A.2
-
53
-
-
84888261459
-
Demographic divergence history of Pied Flycatcher and Collared Flycatcher inferred from whole-genome re-sequencing data
-
Nadachowska-Brzyska, K., Burri, R., Olason, P. I., Kawakami, T., Smeds, L., & Ellegren, H. (2013). Demographic divergence history of Pied Flycatcher and Collared Flycatcher inferred from whole-genome re-sequencing data. PLOS Genetics, 9, e1003942.
-
(2013)
PLOS Genetics
, vol.9
-
-
Nadachowska-Brzyska, K.1
Burri, R.2
Olason, P.I.3
Kawakami, T.4
Smeds, L.5
Ellegren, H.6
-
55
-
-
84883552308
-
Genome evolution and speciation: Toward quantitative descriptions of pattern and process
-
Nosil, P., & Feder, J. L. (2013). Genome evolution and speciation: Toward quantitative descriptions of pattern and process. Evolution, 67, 2461–2467.
-
(2013)
Evolution
, vol.67
, pp. 2461-2467
-
-
Nosil, P.1
Feder, J.L.2
-
56
-
-
84902665599
-
The genomic landscape underlying phenotypic integrity in the face of gene flow in Crows
-
Poelstra, J. W., Vijay, N., Bossu, C. M., Lantz, H., Ryll, B., Müller, I., … Wolf, J. B. W. (2014). The genomic landscape underlying phenotypic integrity in the face of gene flow in Crows. Science, 344, 1410–1414.
-
(2014)
Science
, vol.344
, pp. 1410-1414
-
-
Poelstra, J.W.1
Vijay, N.2
Bossu, C.M.3
Lantz, H.4
Ryll, B.5
Müller, I.6
Wolf, J.B.W.7
-
57
-
-
84941807208
-
Transcriptomics of colour patterning and coloration shifts in crows
-
Poelstra, J. W., Vijay, N., Hoeppner, M. P., & Wolf, J. B. (2015). Transcriptomics of colour patterning and coloration shifts in crows. Molecular Ecology, 24, 4617–4628.
-
(2015)
Molecular Ecology
, vol.24
, pp. 4617-4628
-
-
Poelstra, J.W.1
Vijay, N.2
Hoeppner, M.P.3
Wolf, J.B.4
-
58
-
-
84883556376
-
Genetic divergence along the speciation continuum: The transition from host race to species in Rhagoletis (Diptera: Tephritidae)
-
Powell, T. H. Q., Hood, G. R., Murphy, M. O., Heilveil, J. S., Berlocher, S. H., Nosil, P., & Feder, J. L. (2013). Genetic divergence along the speciation continuum: The transition from host race to species in Rhagoletis (Diptera: Tephritidae). Evolution, 67, 2561–2576.
-
(2013)
Evolution
, vol.67
, pp. 2561-2576
-
-
Powell, T.H.Q.1
Hood, G.R.2
Murphy, M.O.3
Heilveil, J.S.4
Berlocher, S.H.5
Nosil, P.6
Feder, J.L.7
-
59
-
-
84944911288
-
A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing
-
Prum, R. O., Berv, J. S., Dornburg, A., Field, D. J., Townsend, J. P., Lemmon, E. M., & Lemmon, A. R. (2015). A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing. Nature, 526, 569–573.
-
(2015)
Nature
, vol.526
, pp. 569-573
-
-
Prum, R.O.1
Berv, J.S.2
Dornburg, A.3
Field, D.J.4
Townsend, J.P.5
Lemmon, E.M.6
Lemmon, A.R.7
-
60
-
-
85007170287
-
Population structure and local selection yield high genomic variation in Mimulus guttatus
-
Puzey, J. R., Willis, J. H., & Kelly, J. K. (2017). Population structure and local selection yield high genomic variation in Mimulus guttatus. Molecular Ecology, 26, 519–535.
-
(2017)
Molecular Ecology
, vol.26
, pp. 519-535
-
-
Puzey, J.R.1
Willis, J.H.2
Kelly, J.K.3
-
61
-
-
77951770756
-
BEDTools: A flexible suite of utilities for comparing genomic features
-
Quinlan, A. R., & Hall, I. M. (2010). BEDTools: A flexible suite of utilities for comparing genomic features. Bioinformatics, 26, 841–842.
-
(2010)
Bioinformatics
, vol.26
, pp. 841-842
-
-
Quinlan, A.R.1
Hall, I.M.2
-
62
-
-
84873700991
-
Insights into the evolution of Darwin's Finches from comparative analysis of the Geospiza Magnirostris genome sequence
-
Rands, C. M., Darling, A., Fujita, M., Kong, L., Webster, M. T., Clabaut, C., … Ponting, C. P. (2013). Insights into the evolution of Darwin's Finches from comparative analysis of the Geospiza Magnirostris genome sequence. BMC Genomics, 14, 95.
-
(2013)
BMC Genomics
, vol.14
, pp. 95
-
-
Rands, C.M.1
Darling, A.2
Fujita, M.3
Kong, L.4
Webster, M.T.5
Clabaut, C.6
Ponting, C.P.7
-
63
-
-
84878589154
-
Genomic Islands of divergence are not affected by geography of speciation in sunflowers
-
Renaut, S., Grassa, C. J., Yeaman, S., Moyers, B. T., Lai, Z., Kane, N. C., … Rieseberg, L. H. (2013). Genomic Islands of divergence are not affected by geography of speciation in sunflowers. Nature Communications, 4, 1827.
-
(2013)
Nature Communications
, vol.4
, pp. 1827
-
-
Renaut, S.1
Grassa, C.J.2
Yeaman, S.3
Moyers, B.T.4
Lai, Z.5
Kane, N.C.6
Rieseberg, L.H.7
-
64
-
-
84862025426
-
Genome divergence during evolutionary diversification as revealed in replicate Lake–stream Stickleback population pairs
-
Roesti, M., Hendry, A. P., Salzburger, W., & Berner, D. (2012). Genome divergence during evolutionary diversification as revealed in replicate Lake–stream Stickleback population pairs. Molecular Ecology, 21, 2852–2862.
-
(2012)
Molecular Ecology
, vol.21
, pp. 2852-2862
-
-
Roesti, M.1
Hendry, A.P.2
Salzburger, W.3
Berner, D.4
-
65
-
-
84946782276
-
The genomics of ecological vicariance in Threespine Stickleback Fish
-
Roesti, M., Kueng, B., Moser, D., & Berner, D. (2015). The genomics of ecological vicariance in Threespine Stickleback Fish. Nature Communications, 6, 8767.
-
(2015)
Nature Communications
, vol.6
, pp. 8767
-
-
Roesti, M.1
Kueng, B.2
Moser, D.3
Berner, D.4
-
66
-
-
84878444624
-
Recombination in the threespine stickleback genome-patterns and consequences
-
Roesti, M., Moser, S., & Berner, D. (2013). Recombination in the threespine stickleback genome-patterns and consequences. Molecular Ecology, 22, 3014–3027.
-
(2013)
Molecular Ecology
, vol.22
, pp. 3014-3027
-
-
Roesti, M.1
Moser, S.2
Berner, D.3
-
67
-
-
84979856712
-
Reconstruction of gross Avian genome structure, organization and evolution suggests that the Chicken lineage most closely resembles the Dinosaur Avian ancestor
-
Romanov, M. N., Farré, M., Lithgow, P. E., Fowler, K. E., Skinner, B. M., O'Connor, R., … Griffin, D. K. (2014). Reconstruction of gross Avian genome structure, organization and evolution suggests that the Chicken lineage most closely resembles the Dinosaur Avian ancestor. BMC Genomics, 15, 1060.
-
(2014)
BMC Genomics
, vol.15
, pp. 1060
-
-
Romanov, M.N.1
Farré, M.2
Lithgow, P.E.3
Fowler, K.E.4
Skinner, B.M.5
O'Connor, R.6
Griffin, D.K.7
-
68
-
-
33644974019
-
A fast and flexible statistical model for large-scale population genotype data: Applications to inferring missing genotypes and haplotypic phase
-
Scheet, P., & Stephens, M. (2006). A fast and flexible statistical model for large-scale population genotype data: Applications to inferring missing genotypes and haplotypic phase. American Journal of Human Genetics, 78, 629–644.
-
(2006)
American Journal of Human Genetics
, vol.78
, pp. 629-644
-
-
Scheet, P.1
Stephens, M.2
-
69
-
-
84893015775
-
Genomics and the origin of species
-
Seehausen, O., Butlin, R. K., Keller, I., Wagner, C. E., Boughman, J. W., Hohenlohe, P.A., … Widmer, A. (2014). Genomics and the origin of species. Nature Reviews Genetics, 15, 176–192.
-
(2014)
Nature Reviews Genetics
, vol.15
, pp. 176-192
-
-
Seehausen, O.1
Butlin, R.K.2
Keller, I.3
Wagner, C.E.4
Boughman, J.W.5
Hohenlohe, P.A.6
Widmer, A.7
-
70
-
-
85006240194
-
Bioinformatic processing of RAD-Seq data dramatically impacts downstream population genetic inference
-
online early
-
Shafer, A. B. A., Peart, C. R., Tusso, S., Maayan, I., Brelsford, A., Wheat, C. W., & Wolf, J. B. W. (2016). Bioinformatic processing of RAD-Seq data dramatically impacts downstream population genetic inference. Methods in Ecology and Evolution. online early, https://doi.org/10.1111/2041-210X.12700.
-
(2016)
Methods in Ecology and Evolution
-
-
Shafer, A.B.A.1
Peart, C.R.2
Tusso, S.3
Maayan, I.4
Brelsford, A.5
Wheat, C.W.6
Wolf, J.B.W.7
-
71
-
-
84947802505
-
Stable recombination hotspots in birds
-
Singhal, S., Leffler, E. M., Sannareddy, K., Turner, I., Venn, O., Hoope, D. M., … Przeworski, M. (2015). Stable recombination hotspots in birds. Science, 350, 928–932.
-
(2015)
Science
, vol.350
, pp. 928-932
-
-
Singhal, S.1
Leffler, E.M.2
Sannareddy, K.3
Turner, I.4
Venn, O.5
Hoope, D.M.6
Przeworski, M.7
-
72
-
-
84905126894
-
The impact of linked selection on plant genomic variation
-
Slotte, T. (2014). The impact of linked selection on plant genomic variation. Briefings in Functional Genomics, 13, 268–275.
-
(2014)
Briefings in Functional Genomics
, vol.13
, pp. 268-275
-
-
Slotte, T.1
-
73
-
-
85027060293
-
Large scale variation in the rate of de novo mutation in humans and its relationship to divergence and diversity
-
110452
-
Smith, T., & Eyre-Walker, A. (2017). Large scale variation in the rate of de novo mutation in humans and its relationship to divergence and diversity. bioRxiv, 110452. https://doi.org/10.1101/110452
-
(2017)
bioRxiv
-
-
Smith, T.1
Eyre-Walker, A.2
-
74
-
-
0016220238
-
The hitch-hiking effect of a favourable gene
-
Smith, J. M., & Haigh, J. (1974). The hitch-hiking effect of a favourable gene. Genetical Research, 23, 23–35.
-
(1974)
Genetical Research
, vol.23
, pp. 23-35
-
-
Smith, J.M.1
Haigh, J.2
-
75
-
-
84900439893
-
Stick insect genomes reveal natural selection's role in parallel speciation
-
Soria-Carrasco, V., Gompert, Z., Comeault, A. A., Farkas, T. E., Parchman, T. L., Johnston, J. S., … Nosil, P. (2014). Stick insect genomes reveal natural selection's role in parallel speciation. Science, 344, 738–742.
-
(2014)
Science
, vol.344
, pp. 738-742
-
-
Soria-Carrasco, V.1
Gompert, Z.2
Comeault, A.A.3
Farkas, T.E.4
Parchman, T.L.5
Johnston, J.S.6
Nosil, P.7
-
77
-
-
84255177729
-
What can patterns of differentiation across plant genomes tell us about adaptation and speciation?
-
Strasburg, J. L., Sherman, N. A., Wright, K. M., Moyle, L. C., Willis, J. H., & Rieseberg, L. H. (2012). What can patterns of differentiation across plant genomes tell us about adaptation and speciation? Philosophical Transactions of the Royal Society of London B: Biological Sciences, 367, 364–373.
-
(2012)
Philosophical Transactions of the Royal Society of London B: Biological Sciences
, vol.367
, pp. 364-373
-
-
Strasburg, J.L.1
Sherman, N.A.2
Wright, K.M.3
Moyle, L.C.4
Willis, J.H.5
Rieseberg, L.H.6
-
79
-
-
84930182205
-
European sea bass genome and its variation provide insights into adaptation to Euryhalinity and speciation
-
Tine, M., Kuhl, H., Gagnaire, P. A., Louro, B., Desmarais, E., Martins, R. S. T., & Reinhardt, R. (2014). European sea bass genome and its variation provide insights into adaptation to Euryhalinity and speciation. Nature Communications, 5, 5770.
-
(2014)
Nature Communications
, vol.5
, pp. 5770
-
-
Tine, M.1
Kuhl, H.2
Gagnaire, P.A.3
Louro, B.4
Desmarais, E.5
Martins, R.S.T.6
Reinhardt, R.7
-
80
-
-
85017112989
-
Correlated patterns of genetic diversity and differentiation across an Avian family
-
Van Doren, B. M., Campagna, L., Helm, B., Illera, J. C., Lovette, I. J., & Liedvogel, M. (2017). Correlated patterns of genetic diversity and differentiation across an Avian family. Molecular Ecology. https://doi.org/10.1111/mec.14083.
-
(2017)
Molecular Ecology
-
-
Van Doren, B.M.1
Campagna, L.2
Helm, B.3
Illera, J.C.4
Lovette, I.J.5
Liedvogel, M.6
-
81
-
-
84994061010
-
Evolution of heterogeneous genome differentiation across multiple contact zones in a crow species complex
-
Vijay, N., Bossu, C. M., Poelstra, J. W., Weissensteiner, M. H., Suh, A., Kryukov, A. P., & Wolf, J. B. W. (2016). Evolution of heterogeneous genome differentiation across multiple contact zones in a crow species complex. Nature Communications, 7, 13195.
-
(2016)
Nature Communications
, vol.7
, pp. 13195
-
-
Vijay, N.1
Bossu, C.M.2
Poelstra, J.W.3
Weissensteiner, M.H.4
Suh, A.5
Kryukov, A.P.6
Wolf, J.B.W.7
-
82
-
-
84872483518
-
Challenges and strategies in transcriptome assembly and differential gene expression quantification. a comprehensive in silico assessment of RNA-Seq experiments
-
Vijay, N., Poelstra, J. W., Künstner, A., & Wolf, J. B. (2013). Challenges and strategies in transcriptome assembly and differential gene expression quantification. a comprehensive in silico assessment of RNA-Seq experiments. Molecular Ecology, 22, 620–634.
-
(2013)
Molecular Ecology
, vol.22
, pp. 620-634
-
-
Vijay, N.1
Poelstra, J.W.2
Künstner, A.3
Wolf, J.B.4
-
83
-
-
84996563564
-
Evidence for GC-Biased gene conversion as a driver of between-lineage differences in Avian base composition
-
Weber, C. C., Boussau, B., Romiguier, J., Jarvis, E. D., & Ellegren, H. (2014). Evidence for GC-Biased gene conversion as a driver of between-lineage differences in Avian base composition. Genome Biology, 15, 549.
-
(2014)
Genome Biology
, vol.15
, pp. 549
-
-
Weber, C.C.1
Boussau, B.2
Romiguier, J.3
Jarvis, E.D.4
Ellegren, H.5
-
84
-
-
85019142404
-
Combination of short-read, long-read and optical mapping assemblies reveals presumably heterochromatic tandem repeat arrays with population genetic implications
-
Weissensteiner, M. H., Pang, A. W. C., Bunikis, I., Höijer, I., Vinnere-Petterson, O., Suh, A., & Wolf, J. B. W. (2017). Combination of short-read, long-read and optical mapping assemblies reveals presumably heterochromatic tandem repeat arrays with population genetic implications. Genome Research, 27, 697–708.
-
(2017)
Genome Research
, vol.27
, pp. 697-708
-
-
Weissensteiner, M.H.1
Pang, A.W.C.2
Bunikis, I.3
Höijer, I.4
Vinnere-Petterson, O.5
Suh, A.6
Wolf, J.B.W.7
-
85
-
-
77951917823
-
Nucleotide divergence vs. gene expression differentiation: Comparative transcriptome sequencing in natural isolates from the carrion crow and its hybrid zone with the hooded crow
-
Wolf, J. B. W., Bayer, T., Haubold, B., Schilhabel, M., Rosenstiel, P., & Tautz, D. (2010). Nucleotide divergence vs. gene expression differentiation: Comparative transcriptome sequencing in natural isolates from the carrion crow and its hybrid zone with the hooded crow. Molecular Ecology, 19, 162–175.
-
(2010)
Molecular Ecology
, vol.19
, pp. 162-175
-
-
Wolf, J.B.W.1
Bayer, T.2
Haubold, B.3
Schilhabel, M.4
Rosenstiel, P.5
Tautz, D.6
-
86
-
-
84994691945
-
Making sense of genomic islands of differentiation in light of speciation
-
Wolf, J. B. W., & Ellegren, H. (2017). Making sense of genomic islands of differentiation in light of speciation. Nature Reviews Genetics, 18, 87–100.
-
(2017)
Nature Reviews Genetics
, vol.18
, pp. 87-100
-
-
Wolf, J.B.W.1
Ellegren, H.2
-
87
-
-
77953603472
-
Speciation genetics: Current status and evolving approaches
-
Wolf, J. B. W., Lindell, J., & Backström, N. (2010). Speciation genetics: Current status and evolving approaches. Philosophical Transactions of the Royal Society B: Biological Sciences, 365, 1717–1733.
-
(2010)
Philosophical Transactions of the Royal Society B: Biological Sciences
, vol.365
, pp. 1717-1733
-
-
Wolf, J.B.W.1
Lindell, J.2
Backström, N.3
-
88
-
-
0035677674
-
The genic view of the process of speciation
-
Wu, C. I. (2001). The genic view of the process of speciation. Journal of Evolutionary Biology, 14, 851–865.
-
(2001)
Journal of Evolutionary Biology
, vol.14
, pp. 851-865
-
-
Wu, C.I.1
|