-
1
-
-
70350714429
-
Every genome sequence needs a good map
-
Lewin HA, Larkin DM, Pontius J, O'Brien SJ: Every genome sequence needs a good map. Genome Res 2009, 19:1925-1928.
-
(2009)
Genome Res
, vol.19
, pp. 1925-1928
-
-
Lewin, H.A.1
Larkin, D.M.2
Pontius, J.3
O'Brien, S.J.4
-
2
-
-
84917678595
-
Comparative genomics reveals insights into avian genome evolution and adaptation
-
Zhang G, Li C, Li Q, Li B, Larkin DM, Lee C, Storz JF, Antunes A, Greenwold MJ, Meredith RW, ödeen A, Cui J, Zhou Q, Xu L, Pan H, Wang Z, Jin L, Zhang P, Hu H, Yang W, Hu J, Xiao J, Yang Z, Liu Y, Xie Q, Yu H, Lian J, Wen P, Zhang F, Li H, et al: Comparative genomics reveals insights into avian genome evolution and adaptation. Science 2014, 346:1311-1320.
-
(2014)
Science
, vol.346
, pp. 1311-1320
-
-
Zhang, G.1
Li, C.2
Li, Q.3
Li, B.4
Larkin, D.M.5
Lee, C.6
Storz, J.F.7
Antunes, A.8
Greenwold, M.J.9
Meredith, R.W.10
Ödeen, A.11
Cui, J.12
Zhou, Q.13
Xu, L.14
Pan, H.15
Wang, Z.16
Jin, L.17
Zhang, P.18
Hu, H.19
Yang, W.20
Hu, J.21
Xiao, J.22
Yang, Z.23
Liu, Y.24
Xie, Q.25
Yu, H.26
Lian, J.27
Wen, P.28
Zhang, F.29
Li, H.30
more..
-
3
-
-
0018185090
-
Laboratory mice carrying three pairs of Robertsonian translocations: establishment of a strain and analysis of meiotic segregation
-
White BJ, Crandall C, Raveche ES, Hjio JH: Laboratory mice carrying three pairs of Robertsonian translocations: establishment of a strain and analysis of meiotic segregation. Cytogenet Cell Genet 1978, 21:113-138.
-
(1978)
Cytogenet Cell Genet
, vol.21
, pp. 113-138
-
-
White, B.J.1
Crandall, C.2
Raveche, E.S.3
Hjio, J.H.4
-
4
-
-
0003489847
-
-
The Role of Chromosome Change. Cambridge: Cambridge University Press
-
King M: Species evolution. The Role of Chromosome Change. Cambridge: Cambridge University Press; 1993.
-
(1993)
Species evolution
-
-
King, M.1
-
5
-
-
0037422132
-
Engineering evolution to study speciation in yeasts
-
Delneri D, Colson I, Grammenoudi S, Roberts IN, Louis EJ, Oliver SG: Engineering evolution to study speciation in yeasts. Nature 2003, 422:68-72.
-
(2003)
Nature
, vol.422
, pp. 68-72
-
-
Delneri, D.1
Colson, I.2
Grammenoudi, S.3
Roberts, I.N.4
Louis, E.J.5
Oliver, S.G.6
-
6
-
-
0035833999
-
Chromosomal inversions and the reproductive isolation of species
-
Noor MA, Grams KL, Bertucci LA, Reiland J: Chromosomal inversions and the reproductive isolation of species. Proc Natl Acad Sci U S A 2001, 98:12084-12088.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 12084-12088
-
-
Noor, M.A.1
Grams, K.L.2
Bertucci, L.A.3
Reiland, J.4
-
7
-
-
0035400605
-
Chromosomal rearrangements and speciation
-
Rieseberg LH: Chromosomal rearrangements and speciation. Trends Ecol Evol 2001, 16:351-358.
-
(2001)
Trends Ecol Evol
, vol.16
, pp. 351-358
-
-
Rieseberg, L.H.1
-
8
-
-
11144358205
-
Molecular cytogenetic definition of the chicken genome: the first complete avian karyotype
-
Masabanda JS, Burt DW, O'Brien PC, Vignal A, Fillon V, Walsh PS, Cox H, Tempest HG, Smith J, Habermann F, Schmid M, Matsuda Y, Ferguson-Smith MA, Crooijmans RP, Groenen MA, Griffin DK: Molecular cytogenetic definition of the chicken genome: the first complete avian karyotype. Genetics 2004, 166:1367-1373.
-
(2004)
Genetics
, vol.166
, pp. 1367-1373
-
-
Masabanda, J.S.1
Burt, D.W.2
O'Brien, P.C.3
Vignal, A.4
Fillon, V.5
Walsh, P.S.6
Cox, H.7
Tempest, H.G.8
Smith, J.9
Habermann, F.10
Schmid, M.11
Matsuda, Y.12
Ferguson-Smith, M.A.13
Crooijmans, R.P.14
Groenen, M.A.15
Griffin, D.K.16
-
9
-
-
0345458984
-
Aves
-
Chordata 3 B. Edited by John B, Kayano H, Levan A. Berlin: Gebrüder Borntraeger
-
Christidis L: Aves. In Animal Cytogenetics. Volume 4: Chordata 3 B. Edited by John B, Kayano H, Levan A. Berlin: Gebrüder Borntraeger; 1990.
-
(1990)
Animal Cytogenetics
, vol.4
-
-
Christidis, L.1
-
10
-
-
0033369024
-
Micro-and macrochromosome paints generated by flow cytometry and microdissection: tools for mapping the chicken genome
-
Griffin DK, Haberman F, Masabanda J, O'Brien P, Bagga M, Sazanov A, Smith J, Burt DW, Ferguson-Smith M, Wienberg J: Micro-and macrochromosome paints generated by flow cytometry and microdissection: tools for mapping the chicken genome. Cytogenet Cell Genet 1999, 87:278-281.
-
(1999)
Cytogenet Cell Genet
, vol.87
, pp. 278-281
-
-
Griffin, D.K.1
Haberman, F.2
Masabanda, J.3
O'Brien, P.4
Bagga, M.5
Sazanov, A.6
Smith, J.7
Burt, D.W.8
Ferguson-Smith, M.9
Wienberg, J.10
-
11
-
-
34248231212
-
The evolution of the avian genome as revealed by comparative molecular cytogenetics
-
Griffin DK, Robertson LB, Tempest HG, Skinner BM: The evolution of the avian genome as revealed by comparative molecular cytogenetics. Cytogenet Genome Res 2007, 117:64-77.
-
(2007)
Cytogenet Genome Res
, vol.117
, pp. 64-77
-
-
Griffin, D.K.1
Robertson, L.B.2
Tempest, H.G.3
Skinner, B.M.4
-
12
-
-
43249112744
-
Whole genome comparative studies between chicken and turkey and their implications for avian genome evolution
-
Griffin DK, Robertson LB, Tempest HG, Vignal A, Fillon V, Crooijmans RP, Groenen MA, Deryusheva S, Gaginskaya E, Carré W, Waddington D, Talbot R, Völker M, Masabanda JS, Burt DW: Whole genome comparative studies between chicken and turkey and their implications for avian genome evolution. BMC Genomics 2008, 9:168.
-
(2008)
BMC Genomics
, vol.9
, pp. 168
-
-
Griffin, D.K.1
Robertson, L.B.2
Tempest, H.G.3
Vignal, A.4
Fillon, V.5
Crooijmans, R.P.6
Groenen, M.A.7
Deryusheva, S.8
Gaginskaya, E.9
Carré, W.10
Waddington, D.11
Talbot, R.12
Völker, M.13
Masabanda, J.S.14
Burt, D.W.15
-
13
-
-
73349101507
-
An appraisal of nuclear organisation in interphase embryonic fibroblasts of chicken, turkey and duck
-
Skinner BM, Völker M, Ellis M, Griffin DK: An appraisal of nuclear organisation in interphase embryonic fibroblasts of chicken, turkey and duck. Cytogenet Genome Res 2009, 126:156-164.
-
(2009)
Cytogenet Genome Res
, vol.126
, pp. 156-164
-
-
Skinner, B.M.1
Völker, M.2
Ellis, M.3
Griffin, D.K.4
-
14
-
-
77950660808
-
Copy number variation, chromosome rearrangement, and their association with recombination during avian evolution
-
Völker M, Backström N, Skinner BM, Langley EJ, Bunzey SK, Ellegren H, Griffin DK: Copy number variation, chromosome rearrangement, and their association with recombination during avian evolution. Genome Res 2010, 20:503-511.
-
(2010)
Genome Res
, vol.20
, pp. 503-511
-
-
Völker, M.1
Backström, N.2
Skinner, B.M.3
Langley, E.J.4
Bunzey, S.K.5
Ellegren, H.6
Griffin, D.K.7
-
15
-
-
10644283823
-
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
-
International Chicken Genome Sequencing Consortium: Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 2004, 432:695-716.
-
(2004)
Nature
, vol.432
, pp. 695-716
-
-
-
16
-
-
77950376512
-
The genome of a songbird
-
Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Künstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Lin YC, George J, Sweedler J, Southey B, Gunaratne P, Watson M, et al: The genome of a songbird. Nature 2010, 464:757-762.
-
(2010)
Nature
, vol.464
, pp. 757-762
-
-
Warren, W.C.1
Clayton, D.F.2
Ellegren, H.3
Arnold, A.P.4
Hillier, L.W.5
Künstner, A.6
Searle, S.7
White, S.8
Vilella, A.J.9
Fairley, S.10
Heger, A.11
Kong, L.12
Ponting, C.P.13
Jarvis, E.D.14
Mello, C.V.15
Minx, P.16
Lovell, P.17
Velho, T.A.18
Ferris, M.19
Balakrishnan, C.N.20
Sinha, S.21
Blatti, C.22
London, S.E.23
Li, Y.24
Lin, Y.C.25
George, J.26
Sweedler, J.27
Southey, B.28
Gunaratne, P.29
Watson, M.30
more..
-
17
-
-
77957903598
-
Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis
-
Dalloul RA, Long JA, Zimin AV, Aslam L, Beal K, Blomberg LA, Bouffard P, Burt DW, Crasta O, Crooijmans RP, Cooper K, Coulombe RA, De S, Delany ME, Dodgson JB, Dong JJ, Evans C, Frederickson KM, Flicek P, Florea L, Folkerts O, Groenen MA, Harkins TT, Herrero J, Hoffmann S, Megens HJ, Jiang A, de Jong P, Kaiser P, Kim H, et al: Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis. PLoS Biol 2010, 8:e1000475.
-
(2010)
PLoS Biol
, vol.8
-
-
Dalloul, R.A.1
Long, J.A.2
Zimin, A.V.3
Aslam, L.4
Beal, K.5
Blomberg, L.A.6
Bouffard, P.7
Burt, D.W.8
Crasta, O.9
Crooijmans, R.P.10
Cooper, K.11
Coulombe, R.A.12
De, S.13
Delany, M.E.14
Dodgson, J.B.15
Dong, J.J.16
Evans, C.17
Frederickson, K.M.18
Flicek, P.19
Florea, L.20
Folkerts, O.21
Groenen, M.A.22
Harkins, T.T.23
Herrero, J.24
Hoffmann, S.25
Megens, H.J.26
Jiang, A.27
de Jong, P.28
Kaiser, P.29
Kim, H.30
more..
-
18
-
-
0033604564
-
The dynamics of chromosome evolution in birds and mammals
-
Burt DW, Bruley C, Dunn IC, Jones CT, Ramage A, Law AS, Morrice DR, Paton IR, Smith J, Windsor D, Sazanov A, Fries R, Waddington D: The dynamics of chromosome evolution in birds and mammals. Nature 1999, 402:411-413.
-
(1999)
Nature
, vol.402
, pp. 411-413
-
-
Burt, D.W.1
Bruley, C.2
Dunn, I.C.3
Jones, C.T.4
Ramage, A.5
Law, A.S.6
Morrice, D.R.7
Paton, I.R.8
Smith, J.9
Windsor, D.10
Sazanov, A.11
Fries, R.12
Waddington, D.13
-
19
-
-
84866656948
-
A duck RH panel and its potential for assisting NGS genome assembly
-
Rao M, Morisson M, Faraut T, Bardes S, Fève K, Labarthe E, Fillon V, Huang Y, Li N, Vignal A: A duck RH panel and its potential for assisting NGS genome assembly. BMC Genomics 2012, 13:513.
-
(2012)
BMC Genomics
, vol.13
, pp. 513
-
-
Rao, M.1
Morisson, M.2
Faraut, T.3
Bardes, S.4
Fève, K.5
Labarthe, E.6
Fillon, V.7
Huang, Y.8
Li, N.9
Vignal, A.10
-
20
-
-
83655201252
-
Intrachromosomal rearrangements in avian genome evolution: evidence for regions prone to breakpoints
-
Skinner BM, Griffin DK: Intrachromosomal rearrangements in avian genome evolution: evidence for regions prone to breakpoints. Heredity (Edinb) 2012, 108:37-41.
-
(2012)
Heredity (Edinb)
, vol.108
, pp. 37-41
-
-
Skinner, B.M.1
Griffin, D.K.2
-
21
-
-
84900438060
-
Novel tools for characterising inter and intra chromosomal rearrangements in avian microchromosomes
-
Lithgow PE, O'Connor R, Smith D, Fonseka G, Al Mutery A, Rathje C, Frodsham R, O'Brien P, Ferguson-Smith MA, Skinner BM, Griffin DK: Novel tools for characterising inter and intra chromosomal rearrangements in avian microchromosomes. Chromosome Res 2014, 22:85-97.
-
(2014)
Chromosome Res
, vol.22
, pp. 85-97
-
-
Lithgow, P.E.1
O'Connor, R.2
Smith, D.3
Fonseka, G.4
Al Mutery, A.5
Rathje, C.6
Frodsham, R.7
O'Brien, P.8
Ferguson-Smith, M.A.9
Skinner, B.M.10
Griffin, D.K.11
-
22
-
-
66049138940
-
Breakpoint regions and homologous synteny blocks in chromosomes have different evolutionary histories
-
Larkin DM, Pape G, Donthu R, Auvil L, Welge M, Lewin HA: Breakpoint regions and homologous synteny blocks in chromosomes have different evolutionary histories. Genome Res 2009, 19:770-777.
-
(2009)
Genome Res
, vol.19
, pp. 770-777
-
-
Larkin, D.M.1
Pape, G.2
Donthu, R.3
Auvil, L.4
Welge, M.5
Lewin, H.A.6
-
23
-
-
77951621301
-
The genome sequence of taurine cattle: a window to ruminant biology and evolution
-
Bovine Genome Sequencing and Analysis Consortium, Elsik CG, Tellam RL, Worley KC, Gibbs RA, Muzny DM, Weinstock GM, Adelson DL, Eichler EE, Elnitski L, Guigó R, Hamernik DL, Kappes SM, Lewin HA, Lynn DJ, Nicholas FW, Reymond A, Rijnkels M, Skow LC, Zdobnov EM, Schook L, Womack J, Alioto T, Antonarakis SE, Astashyn A, Chapple CE, Chen HC, Chrast J, Câmara F, Ermolaeva O, et al: The genome sequence of taurine cattle: a window to ruminant biology and evolution. Science 2009, 324:522-528.
-
(2009)
Science
, vol.324
, pp. 522-528
-
-
Elsik, C.G.1
Tellam, R.L.2
Worley, K.C.3
Gibbs, R.A.4
Muzny, D.M.5
Weinstock, G.M.6
Adelson, D.L.7
Eichler, E.E.8
Elnitski, L.9
Guigó, R.10
Hamernik, D.L.11
Kappes, S.M.12
Lewin, H.A.13
Lynn, D.J.14
Nicholas, F.W.15
Reymond, A.16
Rijnkels, M.17
Skow, L.C.18
Zdobnov, E.M.19
Schook, L.20
Womack, J.21
Alioto, T.22
Antonarakis, S.E.23
Astashyn, A.24
Chapple, C.E.25
Chen, H.C.26
Chrast, J.27
Câmara, F.28
Ermolaeva, O.29
more..
-
24
-
-
84869003221
-
Analyses of pig genomes provide insight into porcine demography and evolution
-
Groenen MA, Archibald AL, Uenishi H, Tuggle CK, Takeuchi Y, Rothschild MF, Rogel-Gaillard C, Park C, Milan D, Megens HJ, Li S, Larkin DM, Kim H, Frantz LA, Caccamo M, Ahn H, Aken BL, Anselmo A, Anthon C, Auvil L, Badaoui B, Beattie CW, Bendixen C, Berman D, Blecha F, Blomberg J, Bolund L, Bosse M, Botti S, Bujie Z, et al: Analyses of pig genomes provide insight into porcine demography and evolution. Nature 2012, 491:393-398.
-
(2012)
Nature
, vol.491
, pp. 393-398
-
-
Groenen, M.A.1
Archibald, A.L.2
Uenishi, H.3
Tuggle, C.K.4
Takeuchi, Y.5
Rothschild, M.F.6
Rogel-Gaillard, C.7
Park, C.8
Milan, D.9
Megens, H.J.10
Li, S.11
Larkin, D.M.12
Kim, H.13
Frantz, L.A.14
Caccamo, M.15
Ahn, H.16
Aken, B.L.17
Anselmo, A.18
Anthon, C.19
Auvil, L.20
Badaoui, B.21
Beattie, C.W.22
Bendixen, C.23
Berman, D.24
Blecha, F.25
Blomberg, J.26
Bolund, L.27
Bosse, M.28
Botti, S.29
Bujie, Z.30
more..
-
25
-
-
0033391532
-
Genome rearrangement with gene families
-
Sankoff D: Genome rearrangement with gene families. Bioinformatics 1999, 15:909-917.
-
(1999)
Bioinformatics
, vol.15
, pp. 909-917
-
-
Sankoff, D.1
-
26
-
-
0036591666
-
Molecular-evolutionary mechanisms for genomic disorders
-
Stankiewicz P, Lupski JR: Molecular-evolutionary mechanisms for genomic disorders. Curr Opin Genet Dev 2002, 12:312-319.
-
(2002)
Curr Opin Genet Dev
, vol.12
, pp. 312-319
-
-
Stankiewicz, P.1
Lupski, J.R.2
-
27
-
-
79953213687
-
Evolution of the genomic recombination rate in murid rodents
-
Dumont BL, Payseur BA: Evolution of the genomic recombination rate in murid rodents. Genetics 2011, 187:643-657.
-
(2011)
Genetics
, vol.187
, pp. 643-657
-
-
Dumont, B.L.1
Payseur, B.A.2
-
28
-
-
80054110907
-
A comparative study of the recombination pattern in three species of Platyrrhini monkeys (primates)
-
Garcia-Cruz R, Pacheco S, Brieno MA, Steinberg ER, Mudry MD, Ruiz-Herrera A, Garcia-Caldes M: A comparative study of the recombination pattern in three species of Platyrrhini monkeys (primates). Chromosoma 2011, 120:521-530.
-
(2011)
Chromosoma
, vol.120
, pp. 521-530
-
-
Garcia-Cruz, R.1
Pacheco, S.2
Brieno, M.A.3
Steinberg, E.R.4
Mudry, M.D.5
Ruiz-Herrera, A.6
Garcia-Caldes, M.7
-
29
-
-
84899043465
-
Evolution of recombination in eutherian mammals: insights into mechanisms that affect recombination rates and crossover interference
-
Segura J, Ferretti L, Ramos-Onsins S, Capilla L, Farré M, Reis F, Oliver-Bonet M, Fernández-Bellón H, Garcia F, Garcia-Caldés M, Robinson TJ, Ruiz-Herrera A: Evolution of recombination in eutherian mammals: insights into mechanisms that affect recombination rates and crossover interference. Proc Biol Sci 2013, 280:20131945.
-
(2013)
Proc Biol Sci
, vol.280
, pp. 20131945
-
-
Segura, J.1
Ferretti, L.2
Ramos-Onsins, S.3
Capilla, L.4
Farré, M.5
Reis, F.6
Oliver-Bonet, M.7
Fernández-Bellón, H.8
Garcia, F.9
Garcia-Caldés, M.10
Robinson, T.J.11
Ruiz-Herrera, A.12
-
30
-
-
34250359507
-
Principles of genome evolution in the Drosophila melanogaster species group
-
Ranz JM, Maurin D, Chan YS, von Grotthuss M, Hillier LW, Roote J, Ashburner M, Bergman CM: Principles of genome evolution in the Drosophila melanogaster species group. PLoS Biol 2007, 5:e152.
-
(2007)
PLoS Biol
, vol.5
-
-
Ranz, J.M.1
Maurin, D.2
Chan, Y.S.3
von Grotthuss, M.4
Hillier, L.W.5
Roote, J.6
Ashburner, M.7
Bergman, C.M.8
-
31
-
-
84255194654
-
Effects of inversions on within-and between-species recombination and divergence
-
Stevison LS, Hoehn KB, Noor MA: Effects of inversions on within-and between-species recombination and divergence. Genome Biol Evol 2011, 3:830-841.
-
(2011)
Genome Biol Evol
, vol.3
, pp. 830-841
-
-
Stevison, L.S.1
Hoehn, K.B.2
Noor, M.A.3
-
32
-
-
0042027896
-
Structural dynamics of eukaryotic chromosome evolution
-
Eichler EE, Sankoff D: Structural dynamics of eukaryotic chromosome evolution. Science 2003, 301:793-797.
-
(2003)
Science
, vol.301
, pp. 793-797
-
-
Eichler, E.E.1
Sankoff, D.2
-
33
-
-
14544301584
-
Clusters of co-expressed genes in mammalian genomes are conserved by natural selection
-
Singer GA, Lloyd AT, Huminiecki LB, Wolfe KH: Clusters of co-expressed genes in mammalian genomes are conserved by natural selection. Mol Biol Evol 2005, 22:767-775.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 767-775
-
-
Singer, G.A.1
Lloyd, A.T.2
Huminiecki, L.B.3
Wolfe, K.H.4
-
34
-
-
33748195447
-
Evolutionary origin and maintenance of coexpressed gene clusters in mammals
-
Sémon M, Duret L: Evolutionary origin and maintenance of coexpressed gene clusters in mammals. Mol Biol Evol 2006, 23:1715-1723.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 1715-1723
-
-
Sémon, M.1
Duret, L.2
-
35
-
-
84917708482
-
Whole-genome analyses resolve the early branches in the tree of life of modern birds
-
Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SYW, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Li J, Zhang F, Li H, Zhou L, Narula N, Liu L, Ganapathy G, Boussau B, Bayzid MS, Zavidovych V, Subramanian S, Gabaldón T, Capella-Gutiérrez S, Huerta-Cepas J, Rekepalli B, Munch K, Schierup M, et al: Whole-genome analyses resolve the early branches in the tree of life of modern birds. Science 2014, 346:1320-1331.
-
(2014)
Science
, vol.346
, pp. 1320-1331
-
-
Jarvis, E.D.1
Mirarab, S.2
Aberer, A.J.3
Li, B.4
Houde, P.5
Li, C.6
Ho, S.Y.W.7
Faircloth, B.C.8
Nabholz, B.9
Howard, J.T.10
Suh, A.11
Weber, C.C.12
da Fonseca, R.R.13
Li, J.14
Zhang, F.15
Li, H.16
Zhou, L.17
Narula, N.18
Liu, L.19
Ganapathy, G.20
Boussau, B.21
Bayzid, M.S.22
Zavidovych, V.23
Subramanian, S.24
Gabaldón, T.25
Capella-Gutiérrez, S.26
Huerta-Cepas, J.27
Rekepalli, B.28
Munch, K.29
Schierup, M.30
more..
-
36
-
-
84988842770
-
-
Evolution Highway. [http://evolutionhighway.ncsa.uiuc.edu].
-
-
-
-
37
-
-
85051837427
-
Chromosome dynamics is associated with ancestral and lineage-specific phenotypes in birds, archosaurians, and other reptiles
-
Farré M, Narayan J, Slavov G, Auvil L, Li C, Jarvis ED, Burt DW, Griffin DK, Larkin DM: Chromosome dynamics is associated with ancestral and lineage-specific phenotypes in birds, archosaurians, and other reptiles. Proc Natl Acad Sci U S A.
-
Proc Natl Acad Sci U S A
-
-
Farré, M.1
Narayan, J.2
Slavov, G.3
Auvil, L.4
Li, C.5
Jarvis, E.D.6
Burt, D.W.7
Griffin, D.K.8
Larkin, D.M.9
-
38
-
-
22744440499
-
Dynamics of mammalian chromosome evolution inferred from multispecies comparative maps
-
Murphy WJ, Larkin DM, Everts van der Wind A, Bourque G, Tesler G, Auvil L, Beever JE, Chowdhary BP, Galibert F, Gatzke L, Hitte C, Meyers SN, Milan D, Ostrander EA, Pape G, Parker HG, Raudsepp T, Rogatcheva MB, Schook LB, Skow LC, Welge M, Womack JE, O'Brien SJ, Pevzner PA, Lewin HA: Dynamics of mammalian chromosome evolution inferred from multispecies comparative maps. Science 2005, 309:613-617.
-
(2005)
Science
, vol.309
, pp. 613-617
-
-
Murphy, W.J.1
Larkin, D.M.2
Everts van der Wind, A.3
Bourque, G.4
Tesler, G.5
Auvil, L.6
Beever, J.E.7
Chowdhary, B.P.8
Galibert, F.9
Gatzke, L.10
Hitte, C.11
Meyers, S.N.12
Milan, D.13
Ostrander, E.A.14
Pape, G.15
Parker, H.G.16
Raudsepp, T.17
Rogatcheva, M.B.18
Schook, L.B.19
Skow, L.C.20
Welge, M.21
Womack, J.E.22
O'Brien, S.J.23
Pevzner, P.A.24
Lewin, H.A.25
more..
-
39
-
-
10644268435
-
A physical map of the chicken genome
-
Wallis JW, Aerts J, Groenen MA, Crooijmans RP, Layman D, Graves TA, Scheer DE, Kremitzki C, Fedele MJ, Mudd NK, Cardenas M, Higginbotham J, Carter J, McGrane R, Gaige T, Mead K, Walker J, Albracht D, Davito J, Yang SP, Leong S, Chinwalla A, Sekhon M, Wylie K, Dodgson J, Romanov MN, Cheng H, de Jong PJ, Osoegawa K, Nefedov M, et al: A physical map of the chicken genome. Nature 2004, 432:761-764.
-
(2004)
Nature
, vol.432
, pp. 761-764
-
-
Wallis, J.W.1
Aerts, J.2
Groenen, M.A.3
Crooijmans, R.P.4
Layman, D.5
Graves, T.A.6
Scheer, D.E.7
Kremitzki, C.8
Fedele, M.J.9
Mudd, N.K.10
Cardenas, M.11
Higginbotham, J.12
Carter, J.13
McGrane, R.14
Gaige, T.15
Mead, K.16
Walker, J.17
Albracht, D.18
Davito, J.19
Yang, S.P.20
Leong, S.21
Chinwalla, A.22
Sekhon, M.23
Wylie, K.24
Dodgson, J.25
Romanov, M.N.26
Cheng, H.27
de Jong, P.J.28
Osoegawa, K.29
Nefedov, M.30
more..
-
40
-
-
33746216962
-
Cross-species overgo hybridization and comparative physical mapping within avian genomes
-
Romanov MN, Dodgson JB: Cross-species overgo hybridization and comparative physical mapping within avian genomes. Animal Genet 2006, 37:397-399.
-
(2006)
Animal Genet
, vol.37
, pp. 397-399
-
-
Romanov, M.N.1
Dodgson, J.B.2
-
41
-
-
84873175933
-
Reference-assisted chromosome assembly
-
Kim J, Larkin DM, Cai Q, Cai Q, Zhang Y, Ge R-L, Auvil L, Capitanu B, Zhang G, Lewin HA, Ma J: Reference-assisted chromosome assembly. Proc Natl Acad Sci U S A 2013, 110:1785-1790.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 1785-1790
-
-
Kim, J.1
Larkin, D.M.2
Cai, Q.3
Cai, Q.4
Zhang, Y.5
Ge, R.-L.6
Auvil, L.7
Capitanu, B.8
Zhang, G.9
Lewin, H.A.10
Ma, J.11
-
42
-
-
0343320348
-
Comparative painting reveals strong chromosome homology over 80 million years of bird evolution
-
Shetty S, Griffin DK, Graves JA: Comparative painting reveals strong chromosome homology over 80 million years of bird evolution. Chromosome Res 1999, 7:289-295.
-
(1999)
Chromosome Res
, vol.7
, pp. 289-295
-
-
Shetty, S.1
Griffin, D.K.2
Graves, J.A.3
-
43
-
-
1642569228
-
Comparative chromosome painting of chicken autosomal paints 1-9 in nine different bird species
-
Guttenbach M, Nanda I, Feichtinger W, Masabanda JS, Griffin DK, Schmid M: Comparative chromosome painting of chicken autosomal paints 1-9 in nine different bird species. Cytogenet Genome Res 2003, 103:173-184.
-
(2003)
Cytogenet Genome Res
, vol.103
, pp. 173-184
-
-
Guttenbach, M.1
Nanda, I.2
Feichtinger, W.3
Masabanda, J.S.4
Griffin, D.K.5
Schmid, M.6
-
44
-
-
34548699933
-
The molecular basis of chromosome orthologies and sex chromosomal differentiation in palaeognathous birds
-
Nishida-Umehara C, Tsuda Y, Ishijima J, Ando J, Fujiwara A, Matsuda Y, Griffin DK: The molecular basis of chromosome orthologies and sex chromosomal differentiation in palaeognathous birds. Chromosome Res 2007, 15:721-734.
-
(2007)
Chromosome Res
, vol.15
, pp. 721-734
-
-
Nishida-Umehara, C.1
Tsuda, Y.2
Ishijima, J.3
Ando, J.4
Fujiwara, A.5
Matsuda, Y.6
Griffin, D.K.7
-
45
-
-
0008205450
-
Phylogenetic aspects of karyological evidence
-
Edited by Hecht MK, Goody PC, Hecht BM. New York, London: Plenum Press
-
Morescalchi A: Phylogenetic aspects of karyological evidence. In Major Patterns in Vertebrate Evolution. Edited by Hecht MK, Goody PC, Hecht BM. New York, London: Plenum Press; 1977:149-167.
-
(1977)
Major Patterns in Vertebrate Evolution
, pp. 149-167
-
-
Morescalchi, A.1
-
46
-
-
0018792722
-
Karyology of the primitive salamanders, family Hynobiidae
-
Morescalchi A, Odierna G, Olmo E: Karyology of the primitive salamanders, family Hynobiidae. Experientia 1979, 35:1434-1436.
-
(1979)
Experientia
, vol.35
, pp. 1434-1436
-
-
Morescalchi, A.1
Odierna, G.2
Olmo, E.3
-
47
-
-
0018900403
-
Chromosomal evolution in Serpentes: a comparison of G and C chromosome banding patterns of some colubrid and boid genera
-
Mengden GA, Stock AD: Chromosomal evolution in Serpentes: a comparison of G and C chromosome banding patterns of some colubrid and boid genera. Chromosoma 1980, 79:53-64.
-
(1980)
Chromosoma
, vol.79
, pp. 53-64
-
-
Mengden, G.A.1
Stock, A.D.2
-
48
-
-
0011192628
-
Chromosomal repatterning in crocodiles: C, G and N-banding and the in situ hybridization of 18S and 26S rRNA cistrons
-
King M, Honeycutt R, Contreras N: Chromosomal repatterning in crocodiles: C, G and N-banding and the in situ hybridization of 18S and 26S rRNA cistrons. Genetica 1986, 70:191-201.
-
(1986)
Genetica
, vol.70
, pp. 191-201
-
-
King, M.1
Honeycutt, R.2
Contreras, N.3
-
49
-
-
0036045092
-
Origin and evolution of avian microchromosomes
-
Burt DW: Origin and evolution of avian microchromosomes. Cytogenet Genome Res 2002, 96:97-112.
-
(2002)
Cytogenet Genome Res
, vol.96
, pp. 97-112
-
-
Burt, D.W.1
-
50
-
-
0036006429
-
A bird's-eye view of the C-value enigma: genome size, cell size, and metabolic rate in the class Aves
-
Gregory TR: A bird's-eye view of the C-value enigma: genome size, cell size, and metabolic rate in the class Aves. Evolution 2002, 56:121-130.
-
(2002)
Evolution
, vol.56
, pp. 121-130
-
-
Gregory, T.R.1
-
52
-
-
0342382937
-
Rapid speciation and chromosomal evolution in mammals
-
Bush GL, Case SM, Wilson AC, Patton JL: Rapid speciation and chromosomal evolution in mammals. Proc Natl Acad Sci U S A 1977, 74:3942-3946.
-
(1977)
Proc Natl Acad Sci U S A
, vol.74
, pp. 3942-3946
-
-
Bush, G.L.1
Case, S.M.2
Wilson, A.C.3
Patton, J.L.4
-
53
-
-
0000774071
-
Evolutionary history of Drosophila buzzatii. II
-
Fontdevila A, Ruiz A, Ocaña J, Alonso G: Evolutionary history of Drosophila buzzatii. II. How much has chromosomal polymorphism changed in colonization? Evolution 1982, 36:843-851.
-
(1982)
How much has chromosomal polymorphism changed in colonization? Evolution
, vol.36
, pp. 843-851
-
-
Fontdevila, A.1
Ruiz, A.2
Ocaña, J.3
Alonso, G.4
-
54
-
-
61849153558
-
A high-density SNP-based linkage map of the chicken genome reveals sequence features correlated with recombination rate
-
Groenen MA, Wahlberg P, Foglio M, Cheng HH, Megens HJ, Crooijmans RP, Besnier F, Lathrop M, Muir WM, Wong GK, Gut I, Andersson L: A high-density SNP-based linkage map of the chicken genome reveals sequence features correlated with recombination rate. Genome Res 2009, 19:510-519.
-
(2009)
Genome Res
, vol.19
, pp. 510-519
-
-
Groenen, M.A.1
Wahlberg, P.2
Foglio, M.3
Cheng, H.H.4
Megens, H.J.5
Crooijmans, R.P.6
Besnier, F.7
Lathrop, M.8
Muir, W.M.9
Wong, G.K.10
Gut, I.11
Andersson, L.12
-
55
-
-
77950628781
-
The recombination landscape of the zebra finch Taeniopygia guttata genome
-
Backström N, Forstmeier W, Schielzeth H, Mellenius H, Nam K, Bolund E, Webster MT, öst T, Schneider M, Kempenaers B, Ellegren H: The recombination landscape of the zebra finch Taeniopygia guttata genome. Genome Res 2010, 20:485-495.
-
(2010)
Genome Res
, vol.20
, pp. 485-495
-
-
Backström, N.1
Forstmeier, W.2
Schielzeth, H.3
Mellenius, H.4
Nam, K.5
Bolund, E.6
Webster, M.T.7
Öst, T.8
Schneider, M.9
Kempenaers, B.10
Ellegren, H.11
-
56
-
-
84917708480
-
Complex evolutionary trajectories of sex chromosomes across bird taxa
-
Zhou Q, Zhang J, Bachtrog D, An N, Huang Q, Jarvis ED, Gilbert MT, Zhang G: Complex evolutionary trajectories of sex chromosomes across bird taxa. Science 2014, 346:1246338.
-
(2014)
Science
, vol.346
, pp. 1246338
-
-
Zhou, Q.1
Zhang, J.2
Bachtrog, D.3
An, N.4
Huang, Q.5
Jarvis, E.D.6
Gilbert, M.T.7
Zhang, G.8
-
57
-
-
2642513536
-
The debate on avian ancestry: phylogeny, function, and fossils
-
Edited by Chiappe LM, Witmer LM. Berkeley: University of California Press
-
Witmer LM: The debate on avian ancestry: phylogeny, function, and fossils. In Mesozoic Birds: Above the Heads of Dinosaurs. Edited by Chiappe LM, Witmer LM. Berkeley: University of California Press; 2002:3-30.
-
(2002)
Mesozoic Birds: Above the Heads of Dinosaurs
, pp. 3-30
-
-
Witmer, L.M.1
-
58
-
-
40749127913
-
The early evolutionary history of birds
-
Chiappe LM, Dyke GJ: The early evolutionary history of birds. J Paleont Soc Korea 2006, 22:133-151.
-
(2006)
J Paleont Soc Korea
, vol.22
, pp. 133-151
-
-
Chiappe, L.M.1
Dyke, G.J.2
-
59
-
-
33745120113
-
A nearly modern amphibious bird from the Early Cretaceous of northwestern China
-
You HL, Lamanna MC, Harris JD, Chiappe LM, O'Connor J, Ji SA, Lü JC, Yuan CX, Li DQ, Zhang X, Lacovara KJ, Dodson P, Ji Q: A nearly modern amphibious bird from the Early Cretaceous of northwestern China. Science 2006, 312:1640-1643.
-
(2006)
Science
, vol.312
, pp. 1640-1643
-
-
You, H.L.1
Lamanna, M.C.2
Harris, J.D.3
Chiappe, L.M.4
O'Connor, J.5
Ji, S.A.6
Lü, J.C.7
Yuan, C.X.8
Li, D.Q.9
Zhang, X.10
Lacovara, K.J.11
Dodson, P.12
Ji, Q.13
-
60
-
-
84871060805
-
Locomotory abilities and habitat of the Cretaceous bird Gansus yumenensis inferred from limb length proportions
-
Nudds RL, Atterholt J, Wang X, You HL, Dyke GJ: Locomotory abilities and habitat of the Cretaceous bird Gansus yumenensis inferred from limb length proportions. J Evol Biol 2013, 26:150-154.
-
(2013)
J Evol Biol
, vol.26
, pp. 150-154
-
-
Nudds, R.L.1
Atterholt, J.2
Wang, X.3
You, H.L.4
Dyke, G.J.5
-
61
-
-
12744280741
-
Definitive fossil evidence for the extant avian radiation in the Cretaceous
-
Clarke JA, Tambussi CP, Noriega JI, Erickson GM, Ketcham RA: Definitive fossil evidence for the extant avian radiation in the Cretaceous. Nature 2005, 433:305-308.
-
(2005)
Nature
, vol.433
, pp. 305-308
-
-
Clarke, J.A.1
Tambussi, C.P.2
Noriega, J.I.3
Erickson, G.M.4
Ketcham, R.A.5
-
62
-
-
11144253831
-
Locomotor evolution on the line to modern birds
-
Edited by Chiappe LM, Witmer LM. Berkeley: University of California Press
-
Gatesy SM: Locomotor evolution on the line to modern birds. In Mesozoic Birds: Above the Heads of Dinosaurs. Edited by Chiappe LM, Witmer LM. Berkeley: University of California Press; 2002:432-447.
-
(2002)
Mesozoic Birds: Above the Heads of Dinosaurs
, pp. 432-447
-
-
Gatesy, S.M.1
-
63
-
-
84879696615
-
The duck genome and transcriptome provide insight into an avian influenza virus reservoir species
-
Huang Y, Li Y, Burt DW, Chen H, Zhang Y, Qian W, Kim H, Gan S, Zhao Y, Li J, Yi K, Feng H, Zhu P, Li B, Liu Q, Fairley S, Magor KE, Du Z, Hu X, Goodman L, Tafer H, Vignal A, Lee T, Kim KW, Sheng Z, An Y, Searle S, Herrero J, Groenen MA, Crooijmans RP, et al: The duck genome and transcriptome provide insight into an avian influenza virus reservoir species. Nat Genet 2013, 45:776-783.
-
(2013)
Nat Genet
, vol.45
, pp. 776-783
-
-
Huang, Y.1
Li, Y.2
Burt, D.W.3
Chen, H.4
Zhang, Y.5
Qian, W.6
Kim, H.7
Gan, S.8
Zhao, Y.9
Li, J.10
Yi, K.11
Feng, H.12
Zhu, P.13
Li, B.14
Liu, Q.15
Fairley, S.16
Magor, K.E.17
Du, Z.18
Hu, X.19
Goodman, L.20
Tafer, H.21
Vignal, A.22
Lee, T.23
Kim, K.W.24
Sheng, Z.25
An, Y.26
Searle, S.27
Herrero, J.28
Groenen, M.A.29
Crooijmans, R.P.30
more..
-
64
-
-
84988899216
-
-
web server, beta version
-
MGRA (Multiple Genome Rearrangements and Ancestors) web server, beta version. [http://mgra.bioinf.spbau.ru/].
-
-
-
-
65
-
-
66049158304
-
Breakpoint graphs and ancestral genome reconstructions
-
Alekseyev MA, Pevzner PA: Breakpoint graphs and ancestral genome reconstructions. Genome Res 2009, 19:943-957.
-
(2009)
Genome Res
, vol.19
, pp. 943-957
-
-
Alekseyev, M.A.1
Pevzner, P.A.2
-
66
-
-
33144469122
-
Extensive gross genomic rearrangements between chicken and Old World vultures (Falconiformes: Accipitridae)
-
Nanda I, Karl E, Volobouev V, Griffin DK, Schartl M, Schmid M: Extensive gross genomic rearrangements between chicken and Old World vultures (Falconiformes: Accipitridae). Cytogenet Genome Res 2006, 112:286-295.
-
(2006)
Cytogenet Genome Res
, vol.112
, pp. 286-295
-
-
Nanda, I.1
Karl, E.2
Volobouev, V.3
Griffin, D.K.4
Schartl, M.5
Schmid, M.6
-
67
-
-
39749124923
-
Characterization of chromosome structures of Falconinae (Falconidae, Falconiformes, Aves) by chromosome painting and delineation of chromosome rearrangements during their differentiation
-
Nishida C, Ishijima J, Kosaka A, Tanabe H, Habermann FA, Griffin DK, Matsuda Y: Characterization of chromosome structures of Falconinae (Falconidae, Falconiformes, Aves) by chromosome painting and delineation of chromosome rearrangements during their differentiation. Chromosome Res 2008, 16:171-181.
-
(2008)
Chromosome Res
, vol.16
, pp. 171-181
-
-
Nishida, C.1
Ishijima, J.2
Kosaka, A.3
Tanabe, H.4
Habermann, F.A.5
Griffin, D.K.6
Matsuda, Y.7
-
69
-
-
0036143403
-
Genome-Scale Evolution: Reconstructing Gene Orders in the Ancestral Species
-
Bourque G, Pevzner PA: Genome-Scale Evolution: Reconstructing Gene Orders in the Ancestral Species. Genome Res 2002, 12:26-36.
-
(2002)
Genome Res
, vol.12
, pp. 26-36
-
-
Bourque, G.1
Pevzner, P.A.2
-
70
-
-
33750386912
-
Reconstructing contiguous regions of an ancestral genome
-
Ma J, Zhang L, Suh BB, Raney BJ, Burhans RC, Kent JW, Blanchette M, Haussler D, Miller W: Reconstructing contiguous regions of an ancestral genome. Genome Res 2006, 16:1557-1565.
-
(2006)
Genome Res
, vol.16
, pp. 1557-1565
-
-
Ma, J.1
Zhang, L.2
Suh, B.B.3
Raney, B.J.4
Burhans, R.C.5
Kent, J.W.6
Blanchette, M.7
Haussler, D.8
Miller, W.9
-
71
-
-
84988906733
-
-
The R Project for Statistical Computing. [http://www.r-project.org/].
-
-
-
-
73
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID Bioinformatics Resources
-
Huang DW, Sherman BT, Lempicki RA: Systematic and integrative analysis of large gene lists using DAVID Bioinformatics Resources. Nature Protoc 2009, 4:44-57.
-
(2009)
Nature Protoc
, vol.4
, pp. 44-57
-
-
Huang, D.W.1
Sherman, B.T.2
Lempicki, R.A.3
-
74
-
-
84988906751
-
-
Gene Ontology Enrichment Analysis Software Toolkit (GOEAST). [http://omicslab.genetics.ac.cn/GOEAST/].
-
-
-
-
75
-
-
48449104617
-
GOEAST: a web-based software toolkit for Gene Ontology enrichment analysis
-
Zheng Q, Wang XJ: GOEAST: a web-based software toolkit for Gene Ontology enrichment analysis. Nucleic Acids Res 2008, 36(Web Server issue):W358-W363.
-
(2008)
Nucleic Acids Res
, vol.36
, Issue.WEB SERVER ISSUE
, pp. W358-W363
-
-
Zheng, Q.1
Wang, X.J.2
-
76
-
-
84988798810
-
-
BioMart-MartView. [http://www.biomart.org/biomart/martview].
-
-
-
-
77
-
-
84858314394
-
BioMart: driving a paradigm change in biological data management
-
Kasprzyk A: BioMart: driving a paradigm change in biological data management. Database (Oxford) 2011, 2011:bar049.
-
(2011)
Database (Oxford)
, vol.2011
-
-
Kasprzyk, A.1
|