메뉴 건너뛰기




Volumn 20, Issue 10, 2011, Pages 2111-2127

Bayesian estimation of genomic clines

Author keywords

admixture; Bayesian inference; hybrid zones; introgression; reproductive isolation; speciation

Indexed keywords

ANIMAL; ARTICLE; BAYES THEOREM; GENETICS; HYBRIDIZATION; MOUSE; SPECIES DIFFERENTIATION;

EID: 79955625454     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2011.05074.x     Document Type: Article
Times cited : (149)

References (56)
  • 2
    • 84966150008 scopus 로고
    • The dynamics of hybrid zones
    • Barton NH, (1979) The dynamics of hybrid zones. Heredity, 43, 341-359.
    • (1979) Heredity , vol.43 , pp. 341-359
    • Barton, N.H.1
  • 3
    • 0001392664 scopus 로고
    • Multilocus clines
    • Barton NH, (1983) Multilocus clines. Evolution, 37, 454-471.
    • (1983) Evolution , vol.37 , pp. 454-471
    • Barton, N.H.1
  • 5
    • 0024475736 scopus 로고
    • Adaptation, speciation and hybrid zones
    • Barton NH, Hewitt GM, (1989) Adaptation, speciation and hybrid zones. Nature, 341, 497-503.
    • (1989) Nature , vol.341 , pp. 497-503
    • Barton, N.H.1    Hewitt, G.M.2
  • 7
    • 0342960861 scopus 로고    scopus 로고
    • Low intraspecific variation for genomic isolation between hybridizing sunflower species
    • Buerkle CA, Rieseberg LH, (2001) Low intraspecific variation for genomic isolation between hybridizing sunflower species. Evolution, 55, 684-691. (Pubitemid 32464092)
    • (2001) Evolution , vol.55 , Issue.4 , pp. 684-691
    • Alex Buerkle, C.1    Rieseberg, L.H.2
  • 8
    • 39749118087 scopus 로고    scopus 로고
    • The rate of genome stabilization in homoploid hybrid species
    • DOI 10.1111/j.1558-5646.2007.00267.x
    • Buerkle CA, Rieseberg LH, (2008) The rate of genome stabilization in homoploid hybrid species. Evolution, 62, 266-275. (Pubitemid 351294551)
    • (2008) Evolution , vol.62 , Issue.2 , pp. 266-275
    • Buerkle, C.A.1    Rieseberg, L.H.2
  • 9
    • 60549111874 scopus 로고    scopus 로고
    • Speciation in Passerina buntings: Introgression patterns of sex-linked loci identify a candidate gene region for reproductive isolation
    • Carling MD, Brumfield RT, (2009) Speciation in Passerina buntings: introgression patterns of sex-linked loci identify a candidate gene region for reproductive isolation. Molecular Ecology, 18, 834-847.
    • (2009) Molecular Ecology , vol.18 , pp. 834-847
    • Carling, M.D.1    Brumfield, R.T.2
  • 10
    • 3042750437 scopus 로고    scopus 로고
    • Sinauer Associates, Sunderland, Massachusetts.
    • Coyne JA, Orr HA, (2004) Speciation. Sinauer Associates, Sunderland, Massachusetts.
    • (2004) Speciation
    • Coyne, J.A.1    Orr, H.A.2
  • 13
    • 0041817568 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies
    • Falush D, Stephens M, Pritchard JK, (2003) Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics, 164, 1567-1587. (Pubitemid 37102217)
    • (2003) Genetics , vol.164 , Issue.4 , pp. 1567-1587
    • Falush, D.1    Stephens, M.2    Pritchard, J.K.3
  • 14
    • 84966174896 scopus 로고
    • A fuller theory of 'junctions' in inbreeding
    • Fisher RA, (1954) A fuller theory of 'junctions' in inbreeding. Heredity, 8, 187-197.
    • (1954) Heredity , vol.8 , pp. 187-197
    • Fisher, R.A.1
  • 19
    • 84972492387 scopus 로고
    • Inference from iterative simulation using multiple sequences
    • Gelman A, Rubin DB, (1992) Inference from iterative simulation using multiple sequences. Statistical Science, 7, 457-511.
    • (1992) Statistical Science , vol.7 , pp. 457-511
    • Gelman, A.1    Rubin, D.B.2
  • 20
    • 61649102929 scopus 로고    scopus 로고
    • A powerful regression-based method for admixture mapping of isolation across the genome of hybrids
    • Gompert Z, Buerkle CA, (2009) A powerful regression-based method for admixture mapping of isolation across the genome of hybrids. Molecular Ecology, 18, 1207-1224.
    • (2009) Molecular Ecology , vol.18 , pp. 1207-1224
    • Gompert, Z.1    Buerkle, C.A.2
  • 21
    • 79953184676 scopus 로고    scopus 로고
    • A hierarchical bayesian model for next-generation population genomics
    • Gompert Z, Buerkle CA, (2011) A hierarchical bayesian model for next-generation population genomics. Genetics, 187, 903-917.
    • (2011) Genetics , vol.187 , pp. 903-917
    • Gompert, Z.1    Buerkle, C.A.2
  • 22
    • 77953509166 scopus 로고    scopus 로고
    • Bayesian analysis of molecular variance in pyrosequences quantifies population genetic structure across the genome of Lycaeides butterflies
    • Gompert Z, Forister ML, Fordyce JA, Nice CC, Williamson R, Buerkle CA, (2011) Bayesian analysis of molecular variance in pyrosequences quantifies population genetic structure across the genome of Lycaeides butterflies. Molecular Ecology, 19, 2455-2473.
    • (2011) Molecular Ecology , vol.19 , pp. 2455-2473
    • Gompert, Z.1    Forister, M.L.2    Fordyce, J.A.3    Nice, C.C.4    Williamson, R.5    Buerkle, C.A.6
  • 23
    • 77954851812 scopus 로고    scopus 로고
    • Secondary contact between Lycaeides idas and L. melissa in the Rocky Mountains: Extensive introgression and a patchy hybrid zone
    • Gompert Z, Lucas LK, Fordyce JA, Forister ML, Nice CC, (2010) Secondary contact between Lycaeides idas and L. melissa in the Rocky Mountains: extensive introgression and a patchy hybrid zone. Molecular Ecology, 19, 3171-3192.
    • (2010) Molecular Ecology , vol.19 , pp. 3171-3192
    • Gompert, Z.1    Lucas, L.K.2    Fordyce, J.A.3    Forister, M.L.4    Nice, C.C.5
  • 24
    • 37749038315 scopus 로고    scopus 로고
    • Asymmetry and polymorphism of hybrid male sterility during the early stages of speciation in house mice
    • Good JM, Handel MA, Nachman MW, (2008) Asymmetry and polymorphism of hybrid male sterility during the early stages of speciation in house mice. Evolution, 62, 50-65.
    • (2008) Evolution , vol.62 , pp. 50-65
    • Good, J.M.1    Handel, M.A.2    Nachman, M.W.3
  • 25
    • 68949216801 scopus 로고    scopus 로고
    • A Bayesian hierarchical model for analysis of single-nucleotide polymorphisms diversity in multilocus, multipopulation samples
    • Guo F, Dey DK, Holsinger KE, (2009) A Bayesian hierarchical model for analysis of single-nucleotide polymorphisms diversity in multilocus, multipopulation samples. Journal of the American Statistical Association, 104, 142-154.
    • (2009) Journal of the American Statistical Association , vol.104 , pp. 142-154
    • Guo, F.1    Dey, D.K.2    Holsinger, K.E.3
  • 26
    • 0001672813 scopus 로고
    • Mosaic hybrid zones and the nature of species boundaries
    • In: (eds Otte D., Endler J.), pp., Sinauer Associates, Sunderland, MA, USA.
    • Harrison RG, Rand DM, (1989) Mosaic hybrid zones and the nature of species boundaries. In: Speciation and its consequences (eds, Otte D, Endler J,), pp. 110-133, Sinauer Associates, Sunderland, MA, USA.
    • (1989) Speciation and Its Consequences , pp. 110-133
    • Harrison, R.G.1    Rand, D.M.2
  • 27
    • 46449121800 scopus 로고    scopus 로고
    • Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals
    • DOI 10.1101/gr.074187.107
    • Hellmann I, Mang Y, Gu Z, et al., (2008) Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals. Genome Research, 18, 1020-1029. (Pubitemid 351931153)
    • (2008) Genome Research , vol.18 , Issue.7 , pp. 1020-1029
    • Hellmann, I.1    Mang, Y.2    Gu, Z.3    Li, P.4    De La Vega, F.M.5    Clark, A.G.6    Nielsen, R.7
  • 28
    • 0024258513 scopus 로고
    • Hybrid zones - Natural laboratories for evolution studies
    • Hewitt GM, (1988) Hybrid zones-natural laboratories for evolution studies. Trends in Ecology and Evolution, 3, 158-166.
    • (1988) Trends in Ecology and Evolution , vol.3 , pp. 158-166
    • Hewitt, G.M.1
  • 29
    • 33846643453 scopus 로고    scopus 로고
    • Admixture in European Populus hybrid zones makes feasible the mapping of loci that contribute to reproductive isolation and trait differences
    • DOI 10.1038/sj.hdy.6800898, PII 6800898
    • Lexer C, Buerkle CA, Joseph JA, Heinze B, Fay MF, (2007) Admixture in European Populus hybrid zones makes feasible the mapping of loci that contribute to reproductive isolation and trait differences. Heredity, 98, 74-84. (Pubitemid 46173896)
    • (2007) Heredity , vol.98 , Issue.2 , pp. 74-84
    • Lexer, C.1    Buerkle, C.A.2    Joseph, J.A.3    Heinze, B.4    Fay, M.F.5
  • 30
    • 67849128665 scopus 로고    scopus 로고
    • Estimation of allele frequencies from high-coverage genome-sequencing projects
    • Lynch M, (2009) Estimation of allele frequencies from high-coverage genome-sequencing projects. Genetics, 182, 295-301.
    • (2009) Genetics , vol.182 , pp. 295-301
    • Lynch, M.1
  • 32
    • 17844367344 scopus 로고    scopus 로고
    • Hybridization as an invasion of the genome
    • DOI 10.1016/j.tree.2005.02.010, Invasions
    • Mallet J, (2005) Hybridization as an invasion of the genome. Trends in Ecology and Evolution, 20, 229-237. (Pubitemid 40588907)
    • (2005) Trends in Ecology and Evolution , vol.20 , Issue.5 , pp. 229-237
    • Mallet, J.1
  • 33
    • 33646203612 scopus 로고    scopus 로고
    • Detecting adaptive trait introgression between Iris fulva and I. brevicaulis in highly selective field conditions
    • Martin NH, Bouck AC, Arnold ML, (2006) Detecting adaptive trait introgression between Iris fulva and I. brevicaulis in highly selective field conditions. Genetics, 172, 2481-2489.
    • (2006) Genetics , vol.172 , pp. 2481-2489
    • Martin, N.H.1    Bouck, A.C.2    Arnold, M.L.3
  • 34
    • 66749188717 scopus 로고    scopus 로고
    • Variable patterns of introgression in two sculpin hybrid zones suggest that genomic isolation differs among populations
    • Nolte AW, Gompert Z, Buerkle CA, (2009) Variable patterns of introgression in two sculpin hybrid zones suggest that genomic isolation differs among populations. Molecular Ecology, 18, 2615-2627.
    • (2009) Molecular Ecology , vol.18 , pp. 2615-2627
    • Nolte, A.W.1    Gompert, Z.2    Buerkle, C.A.3
  • 35
    • 44849096261 scopus 로고    scopus 로고
    • Ecological niche dimensionality and the evolutionary diversification of stick insects
    • Nosil P, Sandoval CP, (2008) Ecological niche dimensionality and the evolutionary diversification of stick insects. PLoS One, 3, e1907.
    • (2008) PLoS One , vol.3
    • Nosil, P.1    Sandoval, C.P.2
  • 37
    • 77955727591 scopus 로고    scopus 로고
    • Using differential introgression in hybrid zones to identify genomic regions involved in speciation
    • Payseur BA, (2010) Using differential introgression in hybrid zones to identify genomic regions involved in speciation. Molecular Ecology Resources, 10, 806-820.
    • (2010) Molecular Ecology Resources , vol.10 , pp. 806-820
    • Payseur, B.A.1
  • 38
    • 5344240384 scopus 로고    scopus 로고
    • Differential patterns of introgression across the X chromosome in a hybrid zone between two species of house mice
    • Payseur BA, Krenz JG, Nachman MW, (2004) Differential patterns of introgression across the X chromosome in a hybrid zone between two species of house mice. Evolution, 58, 2064-2078. (Pubitemid 39348506)
    • (2004) Evolution , vol.58 , Issue.9 , pp. 2064-2078
    • Payseur, B.A.1    Krenz, J.G.2    Nachman, M.W.3
  • 39
    • 41149087694 scopus 로고    scopus 로고
    • CODA: Convergence diagnosis and output analysis for MCMC
    • Plummer M, Best N, Cowles K, Vines K, (2006) CODA: Convergence diagnosis and output analysis for MCMC. R News, 5, 7-11.
    • (2006) R News , vol.5 , pp. 7-11
    • Plummer, M.1    Best, N.2    Cowles, K.3    Vines, K.4
  • 40
    • 0030686612 scopus 로고    scopus 로고
    • The Pontia daplidice-edusa hybrid zone in northwestern Italy
    • Porter AH, Wenger R, Geiger H, Scholl A, Shapiro AM, (1997) The Pontia daplidice-edusa hybrid zone in northwestern Italy. Evolution, 51, 1561-1573. (Pubitemid 27496381)
    • (1997) Evolution , vol.51 , Issue.5 , pp. 1561-1573
    • Porter, A.H.1    Wenger, R.2    Geiger, H.3    Scholl, A.4    Shapiro, A.M.5
  • 41
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard JK, Stephens M, Donnelly P, (2000) Inference of population structure using multilocus genotype data. Genetics, 155, 945-959. (Pubitemid 30397141)
    • (2000) Genetics , vol.155 , Issue.2 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 43
    • 0032979319 scopus 로고    scopus 로고
    • Hybrid zones and the genetic architecture of a barrier to gene flow between two sunflower species
    • Rieseberg LH, Whitton J, Gardner K, (1999) Hybrid zones and the genetic architecture of a barrier to gene flow between two sunflower species. Genetics, 152, 713-727. (Pubitemid 29272722)
    • (1999) Genetics , vol.152 , Issue.2 , pp. 713-727
    • Rieseberg, L.H.1    Whitton, J.2    Gardner, K.3
  • 45
    • 0022850455 scopus 로고
    • Genetic analysis of a hybrid zone between the fire-bellied toads, Bombina bombina and B. variegata, near Cracow in southern Poland
    • Szymura JM, Barton NH, (1986) Genetic analysis of a hybrid zone between the fire-bellied toads, Bombina bombina and B. variegata, near Cracow in southern Poland. Evolution, 40, 1141-1159.
    • (1986) Evolution , vol.40 , pp. 1141-1159
    • Szymura, J.M.1    Barton, N.H.2
  • 46
    • 0025956339 scopus 로고
    • The genetic structure of the hybrid zone between the fire-bellied toads Bombina bombina and B. variegata: Comparisons between transects and between loci
    • Szymura JM, Barton NH, (1991) The genetic structure of the hybrid zone between the fire-bellied toads Bombina bombina and B. variegata: comparisons between transects and between loci. Evolution, 45, 237-261.
    • (1991) Evolution , vol.45 , pp. 237-261
    • Szymura, J.M.1    Barton, N.H.2
  • 47
    • 38049094991 scopus 로고    scopus 로고
    • Genome-wide patterns of gene flow across a house mouse hybrid zone
    • Teeter KC, Payseur BA, Harris LW, et al., (2008) Genome-wide patterns of gene flow across a house mouse hybrid zone. Genome Research, 18, 67-76.
    • (2008) Genome Research , vol.18 , pp. 67-76
    • Teeter, K.C.1    Payseur, B.A.2    Harris, L.W.3
  • 49
    • 0000608962 scopus 로고
    • Abrupt cline for sex-chromosomes in a hybrid zone between two species of mice
    • Tucker P, Sage R, Warner J, Wilson A, Eicher E, (1992) Abrupt cline for sex-chromosomes in a hybrid zone between two species of mice. Evolution, 46, 1146-1163.
    • (1992) Evolution , vol.46 , pp. 1146-1163
    • Tucker, P.1    Sage, R.2    Warner, J.3    Wilson, A.4    Eicher, E.5
  • 50
    • 24944471763 scopus 로고    scopus 로고
    • Genomic islands of speciation in Anopheles gambiae
    • DOI 10.1371/journal.pbio.0030285, e285
    • Turner T, Hahn M, Nuzhdin S, (2005) Genomic islands of speciation in Anopheles gambiae. PLoS Biology, 3, 1572-1578. (Pubitemid 41306440)
    • (2005) PLoS Biology , vol.3 , Issue.9 , pp. 1572-1578
    • Turner, T.L.1    Hahn, M.W.2    Nuzhdin, S.V.3
  • 52
    • 0043286713 scopus 로고    scopus 로고
    • The maintenance of reproductive isolation in a mosaic hybrid zone between the fire-bellied toads Bombina bombina and B. Variegata
    • Vines TH, Kohler SC, Thiel A, et al., (2003) The maintenance of reproductive isolation in a mosaic hybrid zone between the fire-bellied toads Bombina bombina and B. variegata. Evolution, 57, 1876-1888. (Pubitemid 37096403)
    • (2003) Evolution , vol.57 , Issue.8 , pp. 1876-1888
    • Vines, T.H.1    Kohler, S.C.2    Thiel, M.3    Ghira, I.4    Sands, T.R.5    MacCallum, C.J.6    Barton, N.H.7    Nurnberger, B.8
  • 54
    • 33745712000 scopus 로고    scopus 로고
    • Adaptive introgression of herbivore resistance traits in the weedv sunflower Helianthus annuus
    • DOI 10.1086/504606
    • Whitney KD, Randell RA, Rieseberg LH, (2006) Adaptive introgression of herbivore resistance traits in the weedy sunflower Helianthus annuus. The American Naturalist, 167, 794-807. (Pubitemid 43998041)
    • (2006) American Naturalist , vol.167 , Issue.6 , pp. 794-807
    • Whitney, K.D.1    Randell, R.A.2    Rieseberg, L.H.3
  • 55
    • 0035677674 scopus 로고    scopus 로고
    • The genic view of the process of speciation
    • Wu CI, (2001) The genic view of the process of speciation. Journal of Evolutionary Biology, 14, 851-865.
    • (2001) Journal of Evolutionary Biology , vol.14 , pp. 851-865
    • Wu, C.I.1
  • 56
    • 33646908302 scopus 로고    scopus 로고
    • Hybridization of Bombina bombina and B. variegata (Anura, Discoglossidae) at a sharp ecotone in western Ukraine: Comparisons across transects and over time
    • DOI 10.1554/04-739.1
    • Yanchukov A, Hofman S, Szymura JM, Mezhzherin SV, (2006) Hybridization of Bombina bombina and B. variegata (Anura, Discoglossidae) at a sharp ecotone in western Ukraine: Comparisons across transects and over time. Evolution, 60, 583-600. (Pubitemid 44804543)
    • (2006) Evolution , vol.60 , Issue.3 , pp. 583-600
    • Yanchukov, A.1    Hofman, S.2    Szymura, J.M.3    Mezhzherin, S.V.4    Morozov-Leonov, S.Y.5    Barton, N.H.6    Nurnberger, B.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.