-
1
-
-
50349093233
-
The AID/APOBEC family of nucleic acid mutators
-
Conticello, S.G., The AID/APOBEC family of nucleic acid mutators. Genome Biol., 9, 2008, 229.
-
(2008)
Genome Biol.
, vol.9
, pp. 229
-
-
Conticello, S.G.1
-
2
-
-
33644992513
-
Directed DNA deamination by AID/APOBEC3 in immunity
-
Macduff, D.A., Harris, R.S., Directed DNA deamination by AID/APOBEC3 in immunity. Curr. Biol. 16 (2006), R186–R189.
-
(2006)
Curr. Biol.
, vol.16
, pp. R186-R189
-
-
Macduff, D.A.1
Harris, R.S.2
-
3
-
-
33846555779
-
The APOBEC-2 crystal structure and functional implications for the deaminase AID
-
Prochnow, C., Bransteitter, R., Klein, M.G., Goodman, M.F., Chen, X.S., The APOBEC-2 crystal structure and functional implications for the deaminase AID. Nature 445 (2007), 447–451.
-
(2007)
Nature
, vol.445
, pp. 447-451
-
-
Prochnow, C.1
Bransteitter, R.2
Klein, M.G.3
Goodman, M.F.4
Chen, X.S.5
-
4
-
-
55549098517
-
Crystal structure of the anti-viral APOBEC3G catalytic domain and functional implications
-
Holden, L.G., Prochnow, C., Chang, Y.P., Bransteitter, R., Chelico, L., Sen, U., et al. Crystal structure of the anti-viral APOBEC3G catalytic domain and functional implications. Nature 456 (2008), 121–124.
-
(2008)
Nature
, vol.456
, pp. 121-124
-
-
Holden, L.G.1
Prochnow, C.2
Chang, Y.P.3
Bransteitter, R.4
Chelico, L.5
Sen, U.6
-
5
-
-
70349335267
-
The current structural and functional understanding of APOBEC deaminases
-
Bransteitter, R., Prochnow, C., Chen, X.S., The current structural and functional understanding of APOBEC deaminases. Cell. Mol. Life Sci. 66 (2009), 3137–3147.
-
(2009)
Cell. Mol. Life Sci.
, vol.66
, pp. 3137-3147
-
-
Bransteitter, R.1
Prochnow, C.2
Chen, X.S.3
-
6
-
-
40449114441
-
Structure of the DNA deaminase domain of the HIV-1 restriction factor APOBEC3G
-
Chen, K.M., Harjes, E., Gross, P.J., Fahmy, A., Lu, Y., Shindo, K., et al. Structure of the DNA deaminase domain of the HIV-1 restriction factor APOBEC3G. Nature 452 (2008), 116–119.
-
(2008)
Nature
, vol.452
, pp. 116-119
-
-
Chen, K.M.1
Harjes, E.2
Gross, P.J.3
Fahmy, A.4
Lu, Y.5
Shindo, K.6
-
7
-
-
73449099592
-
Crystal structure of the APOBEC3G catalytic domain reveals potential oligomerization interfaces
-
Shandilya, S.M., Nalam, M.N., Nalivaika, E.A., Gross, P.J., Valesano, J.C., Shindo, K., et al. Crystal structure of the APOBEC3G catalytic domain reveals potential oligomerization interfaces. Structure 18 (2010), 28–38.
-
(2010)
Structure
, vol.18
, pp. 28-38
-
-
Shandilya, S.M.1
Nalam, M.N.2
Nalivaika, E.A.3
Gross, P.J.4
Valesano, J.C.5
Shindo, K.6
-
8
-
-
84867229556
-
The APOBEC3C crystal structure and the interface for HIV-1 Vif binding
-
Kitamura, S., Ode, H., Nakashima, M., Imahashi, M., Naganawa, Y., Kurosawa, T., et al. The APOBEC3C crystal structure and the interface for HIV-1 Vif binding. Nat. Struct. Mol. Biol. 19 (2012), 1005–1010.
-
(2012)
Nat. Struct. Mol. Biol.
, vol.19
, pp. 1005-1010
-
-
Kitamura, S.1
Ode, H.2
Nakashima, M.3
Imahashi, M.4
Naganawa, Y.5
Kurosawa, T.6
-
9
-
-
84878677763
-
NMR structure of human restriction factor APOBEC3A reveals substrate binding and enzyme specificity
-
Byeon, I.J., Ahn, J., Mitra, M., Byeon, C.H., Hercik, K., Hritz, J., et al. NMR structure of human restriction factor APOBEC3A reveals substrate binding and enzyme specificity. Nat. Commun., 4, 2013, 1890.
-
(2013)
Nat. Commun.
, vol.4
, pp. 1890
-
-
Byeon, I.J.1
Ahn, J.2
Mitra, M.3
Byeon, C.H.4
Hercik, K.5
Hritz, J.6
-
10
-
-
84878866554
-
Crystal structure of the DNA cytosine deaminase APOBEC3F: the catalytically active and HIV-1 Vif-binding domain
-
Bohn, M.F., Shandilya, S.M., Albin, J.S., Kouno, T., Anderson, B.D., McDougle, R.M., et al. Crystal structure of the DNA cytosine deaminase APOBEC3F: the catalytically active and HIV-1 Vif-binding domain. Structure 21 (2013), 1042–1050.
-
(2013)
Structure
, vol.21
, pp. 1042-1050
-
-
Bohn, M.F.1
Shandilya, S.M.2
Albin, J.S.3
Kouno, T.4
Anderson, B.D.5
McDougle, R.M.6
-
11
-
-
84887276822
-
Structural determinants of HIV-1 Vif susceptibility and DNA binding in APOBEC3F
-
Siu, K.K., Sultana, A., Azimi, F.C., Lee, J.E., Structural determinants of HIV-1 Vif susceptibility and DNA binding in APOBEC3F. Nat. Commun., 4, 2013, 2593.
-
(2013)
Nat. Commun.
, vol.4
, pp. 2593
-
-
Siu, K.K.1
Sultana, A.2
Azimi, F.C.3
Lee, J.E.4
-
12
-
-
84947771457
-
Crystal structure of the DNA deaminase APOBEC3B catalytic domain
-
Shi, K., Carpenter, M.A., Kurahashi, K., Harris, R.S., Aihara, H., Crystal structure of the DNA deaminase APOBEC3B catalytic domain. J. Biol. Chem. 290 (2015), 28,120–28,130.
-
(2015)
J. Biol. Chem.
, vol.290
, pp. 28120-28130
-
-
Shi, K.1
Carpenter, M.A.2
Kurahashi, K.3
Harris, R.S.4
Aihara, H.5
-
13
-
-
84987790072
-
AID and APOBECs span the gap between innate and adaptive immunity
-
Moris, A., Murray, S., Cardinaud, S., AID and APOBECs span the gap between innate and adaptive immunity. Front. Microbiol., 5, 2014, 534.
-
(2014)
Front. Microbiol.
, vol.5
, pp. 534
-
-
Moris, A.1
Murray, S.2
Cardinaud, S.3
-
14
-
-
84882417741
-
The APOBEC3 family of retroelement restriction factors
-
Refsland, E.W., Harris, R.S., The APOBEC3 family of retroelement restriction factors. Curr. Top. Microbiol. Immunol. 371 (2013), 1–27.
-
(2013)
Curr. Top. Microbiol. Immunol.
, vol.371
, pp. 1-27
-
-
Refsland, E.W.1
Harris, R.S.2
-
15
-
-
84896692562
-
Multiple APOBEC3 restriction factors for HIV-1 and one Vif to rule them all
-
Desimmie, B.A., Delviks-Frankenberrry, K.A., Burdick, R.C., Qi, D., Izumi, T., Pathak, V.K., Multiple APOBEC3 restriction factors for HIV-1 and one Vif to rule them all. J. Mol. Biol. 426 (2014), 1220–1245.
-
(2014)
J. Mol. Biol.
, vol.426
, pp. 1220-1245
-
-
Desimmie, B.A.1
Delviks-Frankenberrry, K.A.2
Burdick, R.C.3
Qi, D.4
Izumi, T.5
Pathak, V.K.6
-
16
-
-
84878956988
-
HIV restriction factors and mechanisms of evasion
-
Malim, M.H., Bieniasz, P.D., HIV restriction factors and mechanisms of evasion. Cold Spring Harb. Perspect. Med., 2, 2012, a006940.
-
(2012)
Cold Spring Harb. Perspect. Med.
, vol.2
, pp. a006940
-
-
Malim, M.H.1
Bieniasz, P.D.2
-
17
-
-
58249114897
-
Sole copy of Z2-type human cytidine deaminase APOBEC3H has inhibitory activity against retrotransposons and HIV-1
-
Tan, L., Sarkis, P.T., Wang, T., Tian, C., Yu, X.F., Sole copy of Z2-type human cytidine deaminase APOBEC3H has inhibitory activity against retrotransposons and HIV-1. FASEB J. 23 (2009), 279–287.
-
(2009)
FASEB J.
, vol.23
, pp. 279-287
-
-
Tan, L.1
Sarkis, P.T.2
Wang, T.3
Tian, C.4
Yu, X.F.5
-
18
-
-
50849100134
-
Antiretroelement activity of APOBEC3H was lost twice in recent human evolution
-
OhAinle, M., Kerns, J.A., Li, M.M., Malik, H.S., Emerman, M., Antiretroelement activity of APOBEC3H was lost twice in recent human evolution. Cell Host Microbe 4 (2008), 249–259.
-
(2008)
Cell Host Microbe
, vol.4
, pp. 249-259
-
-
OhAinle, M.1
Kerns, J.A.2
Li, M.M.3
Malik, H.S.4
Emerman, M.5
-
19
-
-
8544241736
-
Retroviral restriction by APOBEC proteins
-
Harris, R.S., Liddament, M.T., Retroviral restriction by APOBEC proteins. Nat. Rev. Immunol. 4 (2004), 868–877.
-
(2004)
Nat. Rev. Immunol.
, vol.4
, pp. 868-877
-
-
Harris, R.S.1
Liddament, M.T.2
-
20
-
-
77749335648
-
APOBEC deaminases-mutases with defensive roles for immunity
-
Prochnow, C., Bransteitter, R., Chen, X.S., APOBEC deaminases-mutases with defensive roles for immunity. Sci. China C Life Sci. 52 (2009), 893–902.
-
(2009)
Sci. China C Life Sci.
, vol.52
, pp. 893-902
-
-
Prochnow, C.1
Bransteitter, R.2
Chen, X.S.3
-
21
-
-
67149120661
-
The prospct of APOBEC3G for the future of HIV therapy
-
Prochnow, C., Goodman, M.F., Chen, X.S., The prospct of APOBEC3G for the future of HIV therapy. HIV Ther. 3 (2009), 7–10.
-
(2009)
HIV Ther.
, vol.3
, pp. 7-10
-
-
Prochnow, C.1
Goodman, M.F.2
Chen, X.S.3
-
22
-
-
10944223445
-
Biochemical analysis of hyper-mutational targeting by wild type and mutant AID
-
Bransteitter, R., Pham, P., Calabrese, P., Goodman, M.F., Biochemical analysis of hyper-mutational targeting by wild type and mutant AID. J. Biol. Chem. 279 (2004), 51,612–51,621.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 51612-51621
-
-
Bransteitter, R.1
Pham, P.2
Calabrese, P.3
Goodman, M.F.4
-
23
-
-
2942613670
-
AID: how does it aid antibody diversity?
-
Honjo, T., Muramatsu, M., Fagarasan, S., AID: how does it aid antibody diversity?. Immunity 20 (2004), 659–668.
-
(2004)
Immunity
, vol.20
, pp. 659-668
-
-
Honjo, T.1
Muramatsu, M.2
Fagarasan, S.3
-
24
-
-
0041381361
-
AID mutant analyses indicate requirement for class-switch-specific cofactors
-
(Epub 2003 Aug 10)
-
Ta, V.T., Nagaoka, H., Catalan, N., Durandy, A., Fischer, A., Imai, K., et al. AID mutant analyses indicate requirement for class-switch-specific cofactors. Nat. Immunol. 4 (2003), 843–848 (Epub 2003 Aug 10).
-
(2003)
Nat. Immunol.
, vol.4
, pp. 843-848
-
-
Ta, V.T.1
Nagaoka, H.2
Catalan, N.3
Durandy, A.4
Fischer, A.5
Imai, K.6
-
25
-
-
0037452080
-
Transcription-targeted DNA deamination by the AID antibody diversification enzyme
-
Chaudhuri, J., Tian, M., Khuong, C., Chua, K., Pinaud, E., Alt, F.W., Transcription-targeted DNA deamination by the AID antibody diversification enzyme. Nature 422 (2003), 726–730.
-
(2003)
Nature
, vol.422
, pp. 726-730
-
-
Chaudhuri, J.1
Tian, M.2
Khuong, C.3
Chua, K.4
Pinaud, E.5
Alt, F.W.6
-
26
-
-
3242795967
-
Separate domains of AID are required for somatic hypermutation and class-switch recombination
-
(Epub 2004 Jun 13)
-
Shinkura, R., Ito, S., Begum, N.A., Nagaoka, H., Muramatsu, M., Kinoshita, K., et al. Separate domains of AID are required for somatic hypermutation and class-switch recombination. Nat. Immunol. 5 (2004), 707–712 (Epub 2004 Jun 13).
-
(2004)
Nat. Immunol.
, vol.5
, pp. 707-712
-
-
Shinkura, R.1
Ito, S.2
Begum, N.A.3
Nagaoka, H.4
Muramatsu, M.5
Kinoshita, K.6
-
27
-
-
0034264851
-
Activation-induced cytidine deaminase (AID) deficiency causes the autosomal recessive form of the hyper-IgM syndrome (HIGM2)
-
Revy, P., Muto, T., Levy, Y., Geissmann, F., Plebani, A., Sanal, O., et al. Activation-induced cytidine deaminase (AID) deficiency causes the autosomal recessive form of the hyper-IgM syndrome (HIGM2). Cell 102 (2000), 565–575.
-
(2000)
Cell
, vol.102
, pp. 565-575
-
-
Revy, P.1
Muto, T.2
Levy, Y.3
Geissmann, F.4
Plebani, A.5
Sanal, O.6
-
28
-
-
0027434027
-
The p27 catalytic subunit of the apolipoprotein B mRNA editing enzyme is a cytidine deaminase
-
Navaratnam, N., Morrison, J.R., Bhattacharya, S., Patel, D., Funahashi, T., Giannoni, F., et al. The p27 catalytic subunit of the apolipoprotein B mRNA editing enzyme is a cytidine deaminase. J. Biol. Chem. 268 (1993), 20,709–20,712.
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 20709-20712
-
-
Navaratnam, N.1
Morrison, J.R.2
Bhattacharya, S.3
Patel, D.4
Funahashi, T.5
Giannoni, F.6
-
29
-
-
84894582649
-
APOBEC3 multimerization correlates with HIV-1 packaging and restriction activity in living cells
-
Li, J., Chen, Y., Li, M., Carpenter, M.A., McDougle, R.M., Luengas, E.M., et al. APOBEC3 multimerization correlates with HIV-1 packaging and restriction activity in living cells. J. Mol. Biol. 426 (2014), 1296–1307.
-
(2014)
J. Mol. Biol.
, vol.426
, pp. 1296-1307
-
-
Li, J.1
Chen, Y.2
Li, M.3
Carpenter, M.A.4
McDougle, R.M.5
Luengas, E.M.6
-
30
-
-
80053493431
-
Core-APOBEC3C chimerical protein inhibits hepatitis B virus replication
-
Li, D., Liu, J., Kang, F., Guan, W., Gao, X., Wang, Y., et al. Core-APOBEC3C chimerical protein inhibits hepatitis B virus replication. J. Biochem. 150 (2011), 371–374.
-
(2011)
J. Biochem.
, vol.150
, pp. 371-374
-
-
Li, D.1
Liu, J.2
Kang, F.3
Guan, W.4
Gao, X.5
Wang, Y.6
-
31
-
-
84875982289
-
HIV restriction by APOBEC3 in humanized mice
-
Krisko, J.F., Martinez-Torres, F., Foster, J.L., Garcia, J.V., HIV restriction by APOBEC3 in humanized mice. PLoS Pathog., 9, 2013, e1003242.
-
(2013)
PLoS Pathog.
, vol.9
, pp. e1003242
-
-
Krisko, J.F.1
Martinez-Torres, F.2
Foster, J.L.3
Garcia, J.V.4
-
32
-
-
42049096136
-
Evidence for editing of human papillomavirus DNA by APOBEC3 in benign and precancerous lesions
-
Vartanian, J.P., Guetard, D., Henry, M., Wain-Hobson, S., Evidence for editing of human papillomavirus DNA by APOBEC3 in benign and precancerous lesions. Science 320 (2008), 230–233.
-
(2008)
Science
, vol.320
, pp. 230-233
-
-
Vartanian, J.P.1
Guetard, D.2
Henry, M.3
Wain-Hobson, S.4
-
33
-
-
84891692481
-
APOBEC3 deaminases induce hypermutation in human papillomavirus 16 DNA upon beta interferon stimulation
-
Wang, Z., Wakae, K., Kitamura, K., Aoyama, S., Liu, G., Koura, M., et al. APOBEC3 deaminases induce hypermutation in human papillomavirus 16 DNA upon beta interferon stimulation. J. Virol. 88 (2014), 1308–1317.
-
(2014)
J. Virol.
, vol.88
, pp. 1308-1317
-
-
Wang, Z.1
Wakae, K.2
Kitamura, K.3
Aoyama, S.4
Liu, G.5
Koura, M.6
-
34
-
-
84919459598
-
APOBEC3A functions as a restriction factor of human papillomavirus
-
Warren, C.J., Xu, T., Guo, K., Griffin, L.M., Westrich, J.A., Lee, D., et al. APOBEC3A functions as a restriction factor of human papillomavirus. J. Virol. 89 (2015), 688–702.
-
(2015)
J. Virol.
, vol.89
, pp. 688-702
-
-
Warren, C.J.1
Xu, T.2
Guo, K.3
Griffin, L.M.4
Westrich, J.A.5
Lee, D.6
-
35
-
-
20444416733
-
Extensive editing of both hepatitis B virus DNA strands by APOBEC3 cytidine deaminases in vitro and in vivo
-
Suspene, R., Guetard, D., Henry, M., Sommer, P., Wain-Hobson, S., Vartanian, J.P., Extensive editing of both hepatitis B virus DNA strands by APOBEC3 cytidine deaminases in vitro and in vivo. Proc. Natl. Acad. Sci. U. S. A. 102 (2005), 8321–8326.
-
(2005)
Proc. Natl. Acad. Sci. U. S. A.
, vol.102
, pp. 8321-8326
-
-
Suspene, R.1
Guetard, D.2
Henry, M.3
Sommer, P.4
Wain-Hobson, S.5
Vartanian, J.P.6
-
36
-
-
34548779664
-
Hepatitis B virus DNA is subject to extensive editing by the human deaminase APOBEC3C
-
Baumert, T.F., Rosler, C., Malim, M.H., von Weizsacker, F., Hepatitis B virus DNA is subject to extensive editing by the human deaminase APOBEC3C. Hepatology 46 (2007), 682–689.
-
(2007)
Hepatology
, vol.46
, pp. 682-689
-
-
Baumert, T.F.1
Rosler, C.2
Malim, M.H.3
von Weizsacker, F.4
-
37
-
-
70450233544
-
Human APOBEC1 cytidine deaminase edits HBV DNA
-
Gonzalez, M.C., Suspene, R., Henry, M., Guetard, D., Wain-Hobson, S., Vartanian, J.P., Human APOBEC1 cytidine deaminase edits HBV DNA. Retrovirology, 6, 2009, 96.
-
(2009)
Retrovirology
, vol.6
, pp. 96
-
-
Gonzalez, M.C.1
Suspene, R.2
Henry, M.3
Guetard, D.4
Wain-Hobson, S.5
Vartanian, J.P.6
-
38
-
-
33747466389
-
Inhibition of hepatitis B virus replication by APOBEC3G in vitro and in vivo
-
Lei, Y.C., Hao, Y.H., Zhang, Z.M., Tian, Y.J., Wang, B.J., Yang, Y., et al. Inhibition of hepatitis B virus replication by APOBEC3G in vitro and in vivo. World J. Gastroenterol. 12 (2006), 4492–4497.
-
(2006)
World J. Gastroenterol.
, vol.12
, pp. 4492-4497
-
-
Lei, Y.C.1
Hao, Y.H.2
Zhang, Z.M.3
Tian, Y.J.4
Wang, B.J.5
Yang, Y.6
-
39
-
-
84982703210
-
Crystal structures of APOBEC3G N-domain alone and its complex with DNA
-
Xiao, X., Li, S.X., Yang, H., Chen, X.S., Crystal structures of APOBEC3G N-domain alone and its complex with DNA. Nat. Commun., 7, 2016, 12,193.
-
(2016)
Nat. Commun.
, vol.7
, pp. 12193
-
-
Xiao, X.1
Li, S.X.2
Yang, H.3
Chen, X.S.4
-
40
-
-
79952759408
-
Mutator effects and mutation signatures of editing deaminases produced in bacteria and yeast
-
Lada, A.G., Krick, C.F., Kozmin, S.G., Mayorov, V.I., Karpova, T.S., Rogozin, I.B., et al. Mutator effects and mutation signatures of editing deaminases produced in bacteria and yeast. Biochemistry (Mosc) 76 (2011), 131–146.
-
(2011)
Biochemistry (Mosc)
, vol.76
, pp. 131-146
-
-
Lada, A.G.1
Krick, C.F.2
Kozmin, S.G.3
Mayorov, V.I.4
Karpova, T.S.5
Rogozin, I.B.6
-
41
-
-
0036863733
-
RNA editing enzyme APOBEC1 and some of its homologs can act as DNA mutators
-
Harris, R.S., Petersen-Mahrt, S.K., Neuberger, M.S., RNA editing enzyme APOBEC1 and some of its homologs can act as DNA mutators. Mol. Cell 10 (2002), 1247–1253.
-
(2002)
Mol. Cell
, vol.10
, pp. 1247-1253
-
-
Harris, R.S.1
Petersen-Mahrt, S.K.2
Neuberger, M.S.3
-
42
-
-
0037388165
-
Activation-induced cytidine deaminase deaminates deoxycytidine on single-stranded DNA but requires the action of RNase
-
Bransteitter, R., Pham, P., Scharff, M.D., Goodman, M.F., Activation-induced cytidine deaminase deaminates deoxycytidine on single-stranded DNA but requires the action of RNase. Proc. Natl. Acad. Sci. U. S. A. 100 (2003), 4102–4107.
-
(2003)
Proc. Natl. Acad. Sci. U. S. A.
, vol.100
, pp. 4102-4107
-
-
Bransteitter, R.1
Pham, P.2
Scharff, M.D.3
Goodman, M.F.4
-
43
-
-
10644282845
-
Activation-induced cytidine deaminase deaminates 5-methylcytosine in DNA and is expressed in pluripotent tissues: implications for epigenetic reprogramming
-
(Epub 2004 Sep 24)
-
Morgan, H.D., Dean, W., Coker, H.A., Reik, W., Petersen-Mahrt, S.K., Activation-induced cytidine deaminase deaminates 5-methylcytosine in DNA and is expressed in pluripotent tissues: implications for epigenetic reprogramming. J. Biol. Chem. 279 (2004), 52,353–52,360 (Epub 2004 Sep 24).
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 52353-52360
-
-
Morgan, H.D.1
Dean, W.2
Coker, H.A.3
Reik, W.4
Petersen-Mahrt, S.K.5
-
44
-
-
10644229388
-
Methylation protects cytidines from AID-mediated deamination
-
Larijani, M., Frieder, D., Sonbuchner, T.M., Bransteitter, R., Goodman, M.F., Bouhassira, E.E., et al. Methylation protects cytidines from AID-mediated deamination. Mol. Immunol. 42 (2005), 599–604.
-
(2005)
Mol. Immunol.
, vol.42
, pp. 599-604
-
-
Larijani, M.1
Frieder, D.2
Sonbuchner, T.M.3
Bransteitter, R.4
Goodman, M.F.5
Bouhassira, E.E.6
-
45
-
-
84865329141
-
AID/APOBEC deaminases disfavor modified cytosines implicated in DNA demethylation
-
Nabel, C.S., Jia, H., Ye, Y., Shen, L., Goldschmidt, H.L., Stivers, J.T., et al. AID/APOBEC deaminases disfavor modified cytosines implicated in DNA demethylation. Nat. Chem. Biol. 8 (2012), 751–758.
-
(2012)
Nat. Chem. Biol.
, vol.8
, pp. 751-758
-
-
Nabel, C.S.1
Jia, H.2
Ye, Y.3
Shen, L.4
Goldschmidt, H.L.5
Stivers, J.T.6
-
46
-
-
84867270112
-
Efficient deamination of 5-methylcytosines in DNA by human APOBEC3A, but not by AID or APOBEC3G
-
Wijesinghe, P., Bhagwat, A.S., Efficient deamination of 5-methylcytosines in DNA by human APOBEC3A, but not by AID or APOBEC3G. Nucleic Acids Res. 40 (2012), 9206–9217.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 9206-9217
-
-
Wijesinghe, P.1
Bhagwat, A.S.2
-
47
-
-
84867266936
-
Methylcytosine and normal cytosine deamination by the foreign DNA restriction enzyme APOBEC3A
-
Carpenter, M.A., Li, M., Rathore, A., Lackey, L., Law, E.K., Land, A.M., et al. Methylcytosine and normal cytosine deamination by the foreign DNA restriction enzyme APOBEC3A. J. Biol. Chem. 287 (2012), 34,801–34,808.
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 34801-34808
-
-
Carpenter, M.A.1
Li, M.2
Rathore, A.3
Lackey, L.4
Law, E.K.5
Land, A.M.6
-
48
-
-
84879255759
-
Efficient deamination of 5-methylcytidine and 5-substituted cytidine residues in DNA by human APOBEC3A cytidine deaminase
-
Suspene, R., Aynaud, M.M., Vartanian, J.P., Wain-Hobson, S., Efficient deamination of 5-methylcytidine and 5-substituted cytidine residues in DNA by human APOBEC3A cytidine deaminase. PLoS One, 8, 2013, e63461.
-
(2013)
PLoS One
, vol.8
-
-
Suspene, R.1
Aynaud, M.M.2
Vartanian, J.P.3
Wain-Hobson, S.4
-
49
-
-
84942327978
-
DNA cytosine and methylcytosine deamination by APOBEC3B: enhancing methylcytosine deamination by engineering APOBEC3B
-
Fu, Y., Ito, F., Zhang, G., Fernandez, B., Yang, H., Chen, X.S., DNA cytosine and methylcytosine deamination by APOBEC3B: enhancing methylcytosine deamination by engineering APOBEC3B. Biochem. J. 471 (2015), 25–35.
-
(2015)
Biochem. J.
, vol.471
, pp. 25-35
-
-
Fu, Y.1
Ito, F.2
Zhang, G.3
Fernandez, B.4
Yang, H.5
Chen, X.S.6
-
50
-
-
84994173179
-
Biochemical characterization of APOBEC3H variants: implications for their HIV-1 restriction activity and mC modification
-
Gu, J., Chen, Q., Xiao, X., Ito, F., Wolfe, A., Chen, X.S., Biochemical characterization of APOBEC3H variants: implications for their HIV-1 restriction activity and mC modification. J. Mol. Biol. 428 (2016), 4626–4638.
-
(2016)
J. Mol. Biol.
, vol.428
, pp. 4626-4638
-
-
Gu, J.1
Chen, Q.2
Xiao, X.3
Ito, F.4
Wolfe, A.5
Chen, X.S.6
-
51
-
-
84923309215
-
A prevalent cancer susceptibility APOBEC3A hybrid allele bearing APOBEC3B 3′UTR enhances chromosomal DNA damage
-
Caval, V., Suspene, R., Shapira, M., Vartanian, J.P., Wain-Hobson, S., A prevalent cancer susceptibility APOBEC3A hybrid allele bearing APOBEC3B 3′UTR enhances chromosomal DNA damage. Nat. Commun., 5, 2014, 5129.
-
(2014)
Nat. Commun.
, vol.5
, pp. 5129
-
-
Caval, V.1
Suspene, R.2
Shapira, M.3
Vartanian, J.P.4
Wain-Hobson, S.5
-
52
-
-
77249148019
-
Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by AID deficiency
-
Popp, C., Dean, W., Feng, S., Cokus, S.J., Andrews, S., Pellegrini, M., et al. Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by AID deficiency. Nature 463 (2010), 1101–1105.
-
(2010)
Nature
, vol.463
, pp. 1101-1105
-
-
Popp, C.1
Dean, W.2
Feng, S.3
Cokus, S.J.4
Andrews, S.5
Pellegrini, M.6
-
53
-
-
77649104794
-
Reprogramming towards pluripotency requires AID-dependent DNA demethylation
-
Bhutani, N., Brady, J.J., Damian, M., Sacco, A., Corbel, S.Y., Blau, H.M., Reprogramming towards pluripotency requires AID-dependent DNA demethylation. Nature 463 (2010), 1042–1047.
-
(2010)
Nature
, vol.463
, pp. 1042-1047
-
-
Bhutani, N.1
Brady, J.J.2
Damian, M.3
Sacco, A.4
Corbel, S.Y.5
Blau, H.M.6
-
54
-
-
84879415206
-
A comprehensive analysis of the effects of the deaminase AID on the transcriptome and methylome of activated B cells
-
Fritz, E.L., Rosenberg, B.R., Lay, K., Mihailovic, A., Tuschl, T., Papavasiliou, F.N., A comprehensive analysis of the effects of the deaminase AID on the transcriptome and methylome of activated B cells. Nat. Immunol. 14 (2013), 749–755.
-
(2013)
Nat. Immunol.
, vol.14
, pp. 749-755
-
-
Fritz, E.L.1
Rosenberg, B.R.2
Lay, K.3
Mihailovic, A.4
Tuschl, T.5
Papavasiliou, F.N.6
-
55
-
-
58149374613
-
Polymorphisms and splice variants influence the antiretroviral activity of human APOBEC3H
-
Harari, A., Ooms, M., Mulder, L.C., Simon, V., Polymorphisms and splice variants influence the antiretroviral activity of human APOBEC3H. J. Virol. 83 (2009), 295–303.
-
(2009)
J. Virol.
, vol.83
, pp. 295-303
-
-
Harari, A.1
Ooms, M.2
Mulder, L.C.3
Simon, V.4
-
56
-
-
79952611071
-
Analysis of human APOBEC3H haplotypes and anti-human immunodeficiency virus type 1 activity
-
Wang, X., Abudu, A., Son, S., Dang, Y., Venta, P.J., Zheng, Y.H., Analysis of human APOBEC3H haplotypes and anti-human immunodeficiency virus type 1 activity. J. Virol. 85 (2011), 3142–3152.
-
(2011)
J. Virol.
, vol.85
, pp. 3142-3152
-
-
Wang, X.1
Abudu, A.2
Son, S.3
Dang, Y.4
Venta, P.J.5
Zheng, Y.H.6
-
57
-
-
0037926476
-
Processive AID-catalysed cytosine deamination on single-stranded DNA simulates somatic hypermutation
-
Pham, P., Bransteitter, R., Petruska, J., Goodman, M.F., Processive AID-catalysed cytosine deamination on single-stranded DNA simulates somatic hypermutation. Nature 424 (2003), 103–107.
-
(2003)
Nature
, vol.424
, pp. 103-107
-
-
Pham, P.1
Bransteitter, R.2
Petruska, J.3
Goodman, M.F.4
-
58
-
-
0037019315
-
AID mutates E. coli suggesting a DNA deamination mechanism for antibody diversification
-
Petersen-Mahrt, S.K., Harris, R.S., Neuberger, M.S., AID mutates E. coli suggesting a DNA deamination mechanism for antibody diversification. Nature 418 (2002), 99–103.
-
(2002)
Nature
, vol.418
, pp. 99-103
-
-
Petersen-Mahrt, S.K.1
Harris, R.S.2
Neuberger, M.S.3
-
59
-
-
84874188583
-
APOBEC3B is an enzymatic source of mutation in breast cancer
-
Burns, M.B., Lackey, L., Carpenter, M.A., Rathore, A., Land, A.M., Leonard, B., et al. APOBEC3B is an enzymatic source of mutation in breast cancer. Nature 494 (2013), 366–370.
-
(2013)
Nature
, vol.494
, pp. 366-370
-
-
Burns, M.B.1
Lackey, L.2
Carpenter, M.A.3
Rathore, A.4
Land, A.M.5
Leonard, B.6
-
60
-
-
84924341659
-
The RNA editing enzyme APOBEC1 induces somatic mutations and a compatible mutational signature is present in esophageal adenocarcinomas
-
Saraconi, G., Severi, F., Sala, C., Mattiuz, G., Conticello, S.G., The RNA editing enzyme APOBEC1 induces somatic mutations and a compatible mutational signature is present in esophageal adenocarcinomas. Genome Biol., 15, 2014, 417.
-
(2014)
Genome Biol.
, vol.15
, pp. 417
-
-
Saraconi, G.1
Severi, F.2
Sala, C.3
Mattiuz, G.4
Conticello, S.G.5
-
61
-
-
33750344250
-
Identification of APOBEC3DE as another antiretroviral factor from the human APOBEC family
-
Dang, Y., Wang, X., Esselman, W.J., Zheng, Y.H., Identification of APOBEC3DE as another antiretroviral factor from the human APOBEC family. J. Virol. 80 (2006), 10,522–10,533.
-
(2006)
J. Virol.
, vol.80
, pp. 10522-10533
-
-
Dang, Y.1
Wang, X.2
Esselman, W.J.3
Zheng, Y.H.4
-
62
-
-
84971215822
-
The in vitro biochemical characterization of an HIV-1 restriction factor APOBEC3F: importance of loop 7 on both CD1 and CD2 for DNA binding and deamination
-
Chen, Q., Xiao, X., Wolfe, A., Chen, X.S., The in vitro biochemical characterization of an HIV-1 restriction factor APOBEC3F: importance of loop 7 on both CD1 and CD2 for DNA binding and deamination. J. Mol. Biol. 428 (2016), 2661–2670.
-
(2016)
J. Mol. Biol.
, vol.428
, pp. 2661-2670
-
-
Chen, Q.1
Xiao, X.2
Wolfe, A.3
Chen, X.S.4
-
63
-
-
84885641866
-
A biochemical analysis linking APOBEC3A to disparate HIV-1 restriction and skin cancer
-
Pham, P., Landolph, A., Mendez, C., Li, N., Goodman, M.F., A biochemical analysis linking APOBEC3A to disparate HIV-1 restriction and skin cancer. J. Biol. Chem. 288 (2013), 29,294–29,304.
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 29294-29304
-
-
Pham, P.1
Landolph, A.2
Mendez, C.3
Li, N.4
Goodman, M.F.5
-
64
-
-
84874590585
-
A critical role for AID in the initiation of reprogramming to induced pluripotent stem cells
-
Bhutani, N., Decker, M.N., Brady, J.J., Bussat, R.T., Burns, D.M., Corbel, S.Y., et al. A critical role for AID in the initiation of reprogramming to induced pluripotent stem cells. FASEB J. 27 (2013), 1107–1113.
-
(2013)
FASEB J.
, vol.27
, pp. 1107-1113
-
-
Bhutani, N.1
Decker, M.N.2
Brady, J.J.3
Bussat, R.T.4
Burns, D.M.5
Corbel, S.Y.6
-
65
-
-
84881476513
-
AID stabilizes stem-cell phenotype by removing epigenetic memory of pluripotency genes
-
Kumar, R., DiMenna, L., Schrode, N., Liu, T.C., Franck, P., Munoz-Descalzo, S., et al. AID stabilizes stem-cell phenotype by removing epigenetic memory of pluripotency genes. Nature 500 (2013), 89–92.
-
(2013)
Nature
, vol.500
, pp. 89-92
-
-
Kumar, R.1
DiMenna, L.2
Schrode, N.3
Liu, T.C.4
Franck, P.5
Munoz-Descalzo, S.6
-
66
-
-
85020604698
-
Orthologous mammalian APOBEC3A cytidine deaminases hypermutate nuclear DNA
-
Caval, V., Suspène, R., Vartanian, J.-p., Wain-Hobson, S., Caval, V., Suspe, R., Orthologous mammalian APOBEC3A cytidine deaminases hypermutate nuclear DNA. Mol. Biol. Evol., 2013, 1–11.
-
(2013)
Mol. Biol. Evol.
, pp. 1-11
-
-
Caval, V.1
Suspène, R.2
Vartanian, J.-P.3
Wain-Hobson, S.4
Caval, V.5
Suspe, R.6
-
67
-
-
76349094670
-
APOBEC3 proteins mediate the clearance of foreign DNA from human cells
-
Stenglein, M.D., Burns, M.B., Li, M., Lengyel, J., Harris, R.S., APOBEC3 proteins mediate the clearance of foreign DNA from human cells. Nat. Struct. Mol. Biol. 17 (2010), 222–229.
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 222-229
-
-
Stenglein, M.D.1
Burns, M.B.2
Li, M.3
Lengyel, J.4
Harris, R.S.5
-
68
-
-
84882837534
-
Signatures of mutational processes in human cancer
-
Alexandrov, L.B., Nik-Zainal, S., Wedge, D.C., Aparicio, S.A., Behjati, S., Biankin, A.V., et al. Signatures of mutational processes in human cancer. Nature 500 (2013), 415–421.
-
(2013)
Nature
, vol.500
, pp. 415-421
-
-
Alexandrov, L.B.1
Nik-Zainal, S.2
Wedge, D.C.3
Aparicio, S.A.4
Behjati, S.5
Biankin, A.V.6
-
69
-
-
84884709231
-
Cancer mutation signatures, DNA damage mechanisms, and potential clinical implications
-
Harris, R.S., Cancer mutation signatures, DNA damage mechanisms, and potential clinical implications. Genome Med., 5, 2013, 87.
-
(2013)
Genome Med.
, vol.5
, pp. 87
-
-
Harris, R.S.1
-
70
-
-
84891276148
-
APOBEC3B upregulation and genomic mutation patterns in serous ovarian carcinoma
-
Leonard, B., Hart, S.N., Burns, M.B., Carpenter, M.A., Temiz, N.A., Rathore, A., et al. APOBEC3B upregulation and genomic mutation patterns in serous ovarian carcinoma. Cancer Res. 73 (2013), 7222–7231.
-
(2013)
Cancer Res.
, vol.73
, pp. 7222-7231
-
-
Leonard, B.1
Hart, S.N.2
Burns, M.B.3
Carpenter, M.A.4
Temiz, N.A.5
Rathore, A.6
-
71
-
-
84883356320
-
Evidence for APOBEC3B mutagenesis in multiple human cancers
-
Burns, M.B., Temiz, N.A., Harris, R.S., Evidence for APOBEC3B mutagenesis in multiple human cancers. Nat. Genet. 45 (2013), 977–983.
-
(2013)
Nat. Genet.
, vol.45
, pp. 977-983
-
-
Burns, M.B.1
Temiz, N.A.2
Harris, R.S.3
-
72
-
-
84883394595
-
APOBEC3B mutagenesis in cancer
-
Kuong, K.J., Loeb, L.A., APOBEC3B mutagenesis in cancer. Nat. Genet. 45 (2013), 964–965.
-
(2013)
Nat. Genet.
, vol.45
, pp. 964-965
-
-
Kuong, K.J.1
Loeb, L.A.2
-
73
-
-
84879061509
-
DNA deaminases induce break-associated mutation showers with implication of APOBEC3B and 3A in breast cancer kataegis
-
Taylor, B.J., Nik-Zainal, S., Wu, Y.L., Stebbings, L.A., Raine, K., Campbell, P.J., et al. DNA deaminases induce break-associated mutation showers with implication of APOBEC3B and 3A in breast cancer kataegis. elife, 2, 2013, e00534.
-
(2013)
elife
, vol.2
, pp. e00534
-
-
Taylor, B.J.1
Nik-Zainal, S.2
Wu, Y.L.3
Stebbings, L.A.4
Raine, K.5
Campbell, P.J.6
-
74
-
-
77952399342
-
Structural model for deoxycytidine deamination mechanisms of the HIV-1 inactivation enzyme APOBEC3G
-
Chelico, L., Prochnow, C., Erie, D.A., Chen, X.S., Goodman, M.F., Structural model for deoxycytidine deamination mechanisms of the HIV-1 inactivation enzyme APOBEC3G. J. Biol. Chem. 285 (2010), 16,195–16,205.
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 16195-16205
-
-
Chelico, L.1
Prochnow, C.2
Erie, D.A.3
Chen, X.S.4
Goodman, M.F.5
-
75
-
-
85006341729
-
Structural basis for targeted DNA cytosine deamination and mutagenesis by APOBEC3A and APOBEC3B
-
Shi, K., Carpenter, M.A., Banerjee, S., Shaban, N.M., Kurahashi, K., Salamango, D.J., et al. Structural basis for targeted DNA cytosine deamination and mutagenesis by APOBEC3A and APOBEC3B. Nat. Struct. Mol. Biol. 24 (2016), 131–139.
-
(2016)
Nat. Struct. Mol. Biol.
, vol.24
, pp. 131-139
-
-
Shi, K.1
Carpenter, M.A.2
Banerjee, S.3
Shaban, N.M.4
Kurahashi, K.5
Salamango, D.J.6
|