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Volumn 15, Issue 7, 2014, Pages

The RNA editing enzyme APOBEC1 induces somatic mutations and a compatible mutational signature is present in esophageal adenocarcinomas

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA; APOLIPOPROTEIN B MRNA EDITING ENZYME; BENZAMIDE DERIVATIVE; CYTIDINE DEAMINASE; IMATINIB; PIPERAZINE DERIVATIVE; PYRIMIDINE DERIVATIVE;

EID: 84924341659     PISSN: 14747596     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/s13059-014-0417-z     Document Type: Article
Times cited : (82)

References (66)
  • 2
    • 0027200620 scopus 로고
    • Molecular cloning of an apolipoprotein B messenger RNA editing protein
    • Teng B, Burant CF, Davidson NO: Molecular cloning of an apolipoprotein B messenger RNA editing protein. Science 1993, 260:1816-1819.
    • (1993) Science , vol.260 , pp. 1816-1819
    • Teng, B.1    Burant, C.F.2    Davidson, N.O.3
  • 4
    • 50349093233 scopus 로고    scopus 로고
    • The AID/APOBEC family of nucleic acid mutators
    • Conticello SG: The AID/APOBEC family of nucleic acid mutators. Genome Biol 2008, 9:229.
    • (2008) Genome Biol , vol.9 , pp. 229
    • Conticello, S.G.1
  • 6
    • 0034268780 scopus 로고    scopus 로고
    • Class switch recombination and hypermutation require activation-induced cytidine deaminase (AID), a potential RNA editing enzyme
    • Muramatsu M, Kinoshita K, Fagarasan S, Yamada S, Shinkai Y, Honjo T: Class switch recombination and hypermutation require activation-induced cytidine deaminase (AID), a potential RNA editing enzyme. Cell 2000, 102:553-563.
    • (2000) Cell , vol.102 , pp. 553-563
    • Muramatsu, M.1    Kinoshita, K.2    Fagarasan, S.3    Yamada, S.4    Shinkai, Y.5    Honjo, T.6
  • 7
    • 34249790004 scopus 로고    scopus 로고
    • Molecular mechanisms of antibody somatic hypermutation
    • Di Noia JM, Neuberger MS: Molecular mechanisms of antibody somatic hypermutation. Annu Rev Biochem 2007, 76:1-22.
    • (2007) Annu Rev Biochem , vol.76 , pp. 1-22
    • Di Noia, J.M.1    Neuberger, M.S.2
  • 8
    • 0037043699 scopus 로고    scopus 로고
    • Isolation of a human gene that inhibits HIV-1 infection and is suppressed by the viral Vif protein
    • Sheehy AM, Gaddis NC, Choi JD, Malim MH: Isolation of a human gene that inhibits HIV-1 infection and is suppressed by the viral Vif protein. Nature 2002, 418:646-650.
    • (2002) Nature , vol.418 , pp. 646-650
    • Sheehy, A.M.1    Gaddis, N.C.2    Choi, J.D.3    Malim, M.H.4
  • 9
    • 84882417741 scopus 로고    scopus 로고
    • The APOBEC3 family of retroelement restriction factors
    • Refsland EW, Harris RS: The APOBEC3 family of retroelement restriction factors. Curr Top Microbiol Immunol 2013, 371:1-27.
    • (2013) Curr Top Microbiol Immunol , vol.371 , pp. 1-27
    • Refsland, E.W.1    Harris, R.S.2
  • 10
  • 11
    • 0031048641 scopus 로고    scopus 로고
    • A novel translational repressor mRNA is edited extensively in livers containing tumors caused by the transgene expression of the apoB mRNA-editing enzyme
    • Yamanaka S, Poksay KS, Arnold KS, Innerarity TL: A novel translational repressor mRNA is edited extensively in livers containing tumors caused by the transgene expression of the apoB mRNA-editing enzyme. Genes Dev 1997, 11:321-333.
    • (1997) Genes Dev , vol.11 , pp. 321-333
    • Yamanaka, S.1    Poksay, K.S.2    Arnold, K.S.3    Innerarity, T.L.4
  • 13
    • 0033998026 scopus 로고    scopus 로고
    • An AU-rich sequence element (UUUN[A/U]U) downstream of the edited C in apolipoprotein B mRNA is a high-affinity binding site for Apobec-1: binding of Apobec-1 to this motif in the 3' untranslated region of c-myc increases mRNA stability
    • Anant S, Davidson NO: An AU-rich sequence element (UUUN[A/U]U) downstream of the edited C in apolipoprotein B mRNA is a high-affinity binding site for Apobec-1: binding of Apobec-1 to this motif in the 3' untranslated region of c-myc increases mRNA stability. Mol Cell Biol 2000, 20:1982-1992.
    • (2000) Mol Cell Biol , vol.20 , pp. 1982-1992
    • Anant, S.1    Davidson, N.O.2
  • 15
    • 0036863733 scopus 로고    scopus 로고
    • RNA editing enzyme APOBEC1 and some of its homologs can act as DNA mutators
    • Harris RS, Petersen-Mahrt SK, Neuberger MS: RNA editing enzyme APOBEC1 and some of its homologs can act as DNA mutators. Mol Cell 2002, 10:1247-1253.
    • (2002) Mol Cell , vol.10 , pp. 1247-1253
    • Harris, R.S.1    Petersen-Mahrt, S.K.2    Neuberger, M.S.3
  • 16
    • 0038375028 scopus 로고    scopus 로고
    • In vitro deamination of cytosine to uracil in single-stranded DNA by apolipoprotein B editing complex catalytic subunit 1 (APOBEC1)
    • Petersen-Mahrt SK, Neuberger MS: In vitro deamination of cytosine to uracil in single-stranded DNA by apolipoprotein B editing complex catalytic subunit 1 (APOBEC1). J Biol Chem 2003, 278:19583-19586.
    • (2003) J Biol Chem , vol.278 , pp. 19583-19586
    • Petersen-Mahrt, S.K.1    Neuberger, M.S.2
  • 17
    • 79952126772 scopus 로고    scopus 로고
    • Analysis of reptilian APOBEC1 suggests that RNA editing may not be its ancestral function
    • Severi F, Chicca A, Conticello SG: Analysis of reptilian APOBEC1 suggests that RNA editing may not be its ancestral function. Mol Biol Evol 2011, 28:1125-1129.
    • (2011) Mol Biol Evol , vol.28 , pp. 1125-1129
    • Severi, F.1    Chicca, A.2    Conticello, S.G.3
  • 18
    • 10644282845 scopus 로고    scopus 로고
    • Activationinduced cytidine deaminase deaminates 5-methylcytosine in DNA and is expressed in pluripotent tissues: implications for epigenetic reprogramming
    • Morgan HD, Dean W, Coker HA, Reik W, Petersen-Mahrt SK: Activationinduced cytidine deaminase deaminates 5-methylcytosine in DNA and is expressed in pluripotent tissues: implications for epigenetic reprogramming. J Biol Chem 2004, 279:52353-52360.
    • (2004) J Biol Chem , vol.279 , pp. 52353-52360
    • Morgan, H.D.1    Dean, W.2    Coker, H.A.3    Reik, W.4    Petersen-Mahrt, S.K.5
  • 19
    • 79955538247 scopus 로고    scopus 로고
    • Hydroxylation of 5-methylcytosine by TET1 promotes active DNA demethylation in the adult brain
    • Guo JU, Su Y, Zhong C, Ming GL, Song H: Hydroxylation of 5-methylcytosine by TET1 promotes active DNA demethylation in the adult brain. Cell 2011, 145:423-434.
    • (2011) Cell , vol.145 , pp. 423-434
    • Guo, J.U.1    Su, Y.2    Zhong, C.3    Ming, G.L.4    Song, H.5
  • 24
    • 80052206764 scopus 로고    scopus 로고
    • Intrinsic restriction activity by apolipoprotein B mRNA editing enzyme APOBEC1 against the mobility of autonomous retrotransposons
    • Ikeda T, Abd El Galil KH, Tokunaga K, Maeda K, Sata T, Sakaguchi N, Heidmann T, Koito A: Intrinsic restriction activity by apolipoprotein B mRNA editing enzyme APOBEC1 against the mobility of autonomous retrotransposons. Nucleic Acids Res 2011, 39:5538-5554.
    • (2011) Nucleic Acids Res , vol.39 , pp. 5538-5554
    • Ikeda, T.1    Abd El Galil, K.H.2    Tokunaga, K.3    Maeda, K.4    Sata, T.5    Sakaguchi, N.6    Heidmann, T.7    Koito, A.8
  • 25
    • 80053989501 scopus 로고    scopus 로고
    • APOBEC1-mediated editing and attenuation of herpes simplex virus 1 DNA indicate that neurons have an antiviral role during herpes simplex encephalitis
    • Gee P, Ando Y, Kitayama H, Yamamoto SP, Kanemura Y, Ebina H, Kawaguchi Y, Koyanagi Y: APOBEC1-mediated editing and attenuation of herpes simplex virus 1 DNA indicate that neurons have an antiviral role during herpes simplex encephalitis. J Virol 2011, 85:9726-9736.
    • (2011) J Virol , vol.85 , pp. 9726-9736
    • Gee, P.1    Ando, Y.2    Kitayama, H.3    Yamamoto, S.P.4    Kanemura, Y.5    Ebina, H.6    Kawaguchi, Y.7    Koyanagi, Y.8
  • 28
    • 84875887504 scopus 로고    scopus 로고
    • Chromosome translocation, B cell lymphoma, and activation-induced cytidine deaminase
    • Robbiani DF, Nussenzweig MC: Chromosome translocation, B cell lymphoma, and activation-induced cytidine deaminase. Annu Rev Pathol 2013, 8:79-103.
    • (2013) Annu Rev Pathol , vol.8 , pp. 79-103
    • Robbiani, D.F.1    Nussenzweig, M.C.2
  • 31
    • 84883356320 scopus 로고    scopus 로고
    • Evidence for APOBEC3B mutagenesis in multiple human cancers
    • Burns MB, Temiz NA, Harris RS: Evidence for APOBEC3B mutagenesis in multiple human cancers. Nat Genet 2013, 45:977-983.
    • (2013) Nat Genet , vol.45 , pp. 977-983
    • Burns, M.B.1    Temiz, N.A.2    Harris, R.S.3
  • 36
    • 60049095326 scopus 로고    scopus 로고
    • Activation-induced cytidine deaminasemediated hypermutation in the DT40 cell line
    • Arakawa H, Buerstedde JM: Activation-induced cytidine deaminasemediated hypermutation in the DT40 cell line. Philos Trans R Soc Lond B Biol Sci 2009, 364:639-644.
    • (2009) Philos Trans R Soc Lond B Biol Sci , vol.364 , pp. 639-644
    • Arakawa, H.1    Buerstedde, J.M.2
  • 38
    • 19344367559 scopus 로고    scopus 로고
    • Activation-induced cytidine deaminase initiates immunoglobulin gene conversion and hypermutation by a common intermediate
    • Arakawa H, Saribasak H, Buerstedde JM: Activation-induced cytidine deaminase initiates immunoglobulin gene conversion and hypermutation by a common intermediate. PLoS Biol 2004, 2:E179.
    • (2004) PLoS Biol , vol.2 , pp. E179
    • Arakawa, H.1    Saribasak, H.2    Buerstedde, J.M.3
  • 39
    • 1542328859 scopus 로고    scopus 로고
    • Comparison of the differential context-dependence of DNA deamination by APOBEC enzymes: correlation with mutation spectra in vivo
    • Beale RC, Petersen-Mahrt SK, Watt IN, Harris RS, Rada C, Neuberger MS: Comparison of the differential context-dependence of DNA deamination by APOBEC enzymes: correlation with mutation spectra in vivo. J Mol Biol 2004, 337:585-596.
    • (2004) J Mol Biol , vol.337 , pp. 585-596
    • Beale, R.C.1    Petersen-Mahrt, S.K.2    Watt, I.N.3    Harris, R.S.4    Rada, C.5    Neuberger, M.S.6
  • 42
    • 78649404299 scopus 로고    scopus 로고
    • Regulation of activation-induced deaminase stability and antibody gene diversification by Hsp90
    • Orthwein A, Patenaude AM, Affar EB, Lamarre A, Young JC, Di Noia JM: Regulation of activation-induced deaminase stability and antibody gene diversification by Hsp90. J Exp Med 2010, 207:2751-2765.
    • (2010) J Exp Med , vol.207 , pp. 2751-2765
    • Orthwein, A.1    Patenaude, A.M.2    Affar, E.B.3    Lamarre, A.4    Young, J.C.5    Di Noia, J.M.6
  • 43
    • 0036081355 scopus 로고    scopus 로고
    • Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
    • Edgar R, Domrachev M, Lash AE: Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 2002, 30:207-210.
    • (2002) Nucleic Acids Res , vol.30 , pp. 207-210
    • Edgar, R.1    Domrachev, M.2    Lash, A.E.3
  • 49
    • 5644255657 scopus 로고    scopus 로고
    • The combination of genetic instability and clonal expansion predicts progression to esophageal adenocarcinoma
    • Maley CC, Galipeau PC, Li X, Sanchez CA, Paulson TG, Blount PL, Reid BJ: The combination of genetic instability and clonal expansion predicts progression to esophageal adenocarcinoma. Cancer Res 2004, 64:7629-7633.
    • (2004) Cancer Res , vol.64 , pp. 7629-7633
    • Maley, C.C.1    Galipeau, P.C.2    Li, X.3    Sanchez, C.A.4    Paulson, T.G.5    Blount, P.L.6    Reid, B.J.7
  • 50
    • 79952305740 scopus 로고    scopus 로고
    • American Gastroenterological Association: American Gastroenterological Association technical review on the management of Barrett's esophagus
    • Spechler SJ, Sharma P, Souza RF, Inadomi JM, Shaheen NJ: American Gastroenterological Association: American Gastroenterological Association technical review on the management of Barrett's esophagus. Gastroenterology 2011, 140:e18-e52. quiz e13.
    • (2011) Gastroenterology , vol.140 , pp. e18-e52+e13
    • Spechler, S.J.1    Sharma, P.2    Souza, R.F.3    Inadomi, J.M.4    Shaheen, N.J.5
  • 51
    • 84871558878 scopus 로고    scopus 로고
    • Correlation of the presence and extent of loss of heterozygosity mutations with histological classifications of Barrett's esophagus
    • Ellsworth E, Jackson SA, Thakkar SJ, Smith DM, Finkelstein S: Correlation of the presence and extent of loss of heterozygosity mutations with histological classifications of Barrett's esophagus. BMC Gastroenterol 2012, 12:181.
    • (2012) BMC Gastroenterol , vol.12 , pp. 181
    • Ellsworth, E.1    Jackson, S.A.2    Thakkar, S.J.3    Smith, D.M.4    Finkelstein, S.5
  • 53
    • 0035839959 scopus 로고    scopus 로고
    • Mechanisms of chromosomal translocations in B cell lymphomas
    • Küppers R, Dalla-Favera R: Mechanisms of chromosomal translocations in B cell lymphomas. Oncogene 2001, 20:5580-5594.
    • (2001) Oncogene , vol.20 , pp. 5580-5594
    • Küppers, R.1    Dalla-Favera, R.2
  • 54
    • 79955530503 scopus 로고    scopus 로고
    • APOBEC3A can activate the DNA damage response and cause cell-cycle arrest
    • Landry S, Narvaiza I, Linfesty DC, Weitzman MD: APOBEC3A can activate the DNA damage response and cause cell-cycle arrest. EMBO Rep 2011, 12:444-450.
    • (2011) EMBO Rep , vol.12 , pp. 444-450
    • Landry, S.1    Narvaiza, I.2    Linfesty, D.C.3    Weitzman, M.D.4
  • 59
    • 77955004656 scopus 로고    scopus 로고
    • Quantitative profiling of the full APOBEC3 mRNA repertoire in lymphocytes and tissues: implications for HIV-1 restriction
    • Refsland EW, Stenglein MD, Shindo K, Albin JS, Brown WL, Harris RS: Quantitative profiling of the full APOBEC3 mRNA repertoire in lymphocytes and tissues: implications for HIV-1 restriction. Nucleic Acids Res 2010, 38:4274-4284.
    • (2010) Nucleic Acids Res , vol.38 , pp. 4274-4284
    • Refsland, E.W.1    Stenglein, M.D.2    Shindo, K.3    Albin, J.S.4    Brown, W.L.5    Harris, R.S.6
  • 62
    • 39149098145 scopus 로고    scopus 로고
    • Expression of AID transgene is regulated in activated B cells but not in resting B cells and kidney
    • Shen HM, Bozek G, Pinkert CA, McBride K, Wang L, Kenter A, Storb U: Expression of AID transgene is regulated in activated B cells but not in resting B cells and kidney. Mol Immunol 2008, 45:1883-1892.
    • (2008) Mol Immunol , vol.45 , pp. 1883-1892
    • Shen, H.M.1    Bozek, G.2    Pinkert, C.A.3    McBride, K.4    Wang, L.5    Kenter, A.6    Storb, U.7
  • 63
    • 0037083364 scopus 로고    scopus 로고
    • Requirement of the activation-induced deaminase (AID) gene for immunoglobulin gene conversion
    • Arakawa H, Hauschild J, Buerstedde JM: Requirement of the activation-induced deaminase (AID) gene for immunoglobulin gene conversion. Science 2002, 295:1301-1306.
    • (2002) Science , vol.295 , pp. 1301-1306
    • Arakawa, H.1    Hauschild, J.2    Buerstedde, J.M.3
  • 64
    • 49349112190 scopus 로고    scopus 로고
    • Interaction between antibody-diversification enzyme AID and spliceosome-associated factor CTNNBL1
    • Conticello SG, Ganesh K, Xue K, Lu M, Rada C, Neuberger MS: Interaction between antibody-diversification enzyme AID and spliceosome-associated factor CTNNBL1. Mol Cell 2008, 31:474-484.
    • (2008) Mol Cell , vol.31 , pp. 474-484
    • Conticello, S.G.1    Ganesh, K.2    Xue, K.3    Lu, M.4    Rada, C.5    Neuberger, M.S.6
  • 65
    • 3042559648 scopus 로고    scopus 로고
    • Mutant loxP vectors for selectable marker recycle and conditional knock-outs
    • Arakawa H, Lodygin D, Buerstedde JM: Mutant loxP vectors for selectable marker recycle and conditional knock-outs. BMC Biotechnol 2001, 1:7.
    • (2001) BMC Biotechnol , vol.1 , pp. 7
    • Arakawa, H.1    Lodygin, D.2    Buerstedde, J.M.3
  • 66
    • 0037019315 scopus 로고    scopus 로고
    • AID mutates E. coli suggesting a DNA deamination mechanism for antibody diversification
    • Petersen-Mahrt SK, Harris RS, Neuberger MS: AID mutates E. coli suggesting a DNA deamination mechanism for antibody diversification. Nature 2002, 418:99-103.
    • (2002) Nature , vol.418 , pp. 99-103
    • Petersen-Mahrt, S.K.1    Harris, R.S.2    Neuberger, M.S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.