-
1
-
-
79951962147
-
CREB and the CRTC co-activators: Sensors for hormonal and metabolic signals
-
Altarejos JY, Montminy M. 2011. CREB and the CRTC co-activators: sensors for hormonal and metabolic signals. Nat Rev Mol Cell Biol 12: 141-151.
-
(2011)
Nat Rev Mol Cell Biol
, vol.12
, pp. 141-151
-
-
Altarejos, J.Y.1
Montminy, M.2
-
2
-
-
77958471357
-
Differential expression analysis for sequence count data
-
Anders S, Huber W. 2010. Differential expression analysis for sequence count data. Genome Biol 11: R106.
-
(2010)
Genome Biol
, vol.11
, pp. R106
-
-
Anders, S.1
Huber, W.2
-
3
-
-
84855878190
-
Quantitative analysis of genome-wide chromatin remodeling
-
Baek S, Sung MH, Hager GL. 2012. Quantitative analysis of genome-wide chromatin remodeling. Methods Mol Biol 833: 433-441.
-
(2012)
Methods Mol Biol
, vol.833
, pp. 433-441
-
-
Baek, S.1
Sung, M.H.2
Hager, G.L.3
-
4
-
-
84926178081
-
Bursty gene expression in the intact mammalian liver
-
Bahar Halpern K, Tanami S, Landen S, Chapal M, Szlak L, Hutzler A, Nizhberg A, Itzkovitz S. 2015. Bursty gene expression in the intact mammalian liver. Mol Cell 58: 147-156.
-
(2015)
Mol Cell
, vol.58
, pp. 147-156
-
-
Bahar Halpern, K.1
Tanami, S.2
Landen, S.3
Chapal, M.4
Szlak, L.5
Hutzler, A.6
Nizhberg, A.7
Itzkovitz, S.8
-
5
-
-
79959911826
-
Transcription factor AP1 potentiates chromatin accessibility and glucocorticoid receptor binding
-
Biddie SC, John S, Sabo PJ, Thurman RE, Johnson TA, Schiltz RL, Miranda TB, Sung MH, Trump S, Lightman SL, et al. 2011. Transcription factor AP1 potentiates chromatin accessibility and glucocorticoid receptor binding. Mol Cell 43: 145-155.
-
(2011)
Mol Cell
, vol.43
, pp. 145-155
-
-
Biddie, S.C.1
John, S.2
Sabo, P.J.3
Thurman, R.E.4
Johnson, T.A.5
Schiltz, R.L.6
Miranda, T.B.7
Sung, M.H.8
Trump, S.9
Lightman, S.L.10
-
6
-
-
84856777771
-
Genome-wide profiling of liver X receptor, retinoid X receptor, and peroxisome proliferator-activated receptor a in mouse liver reveals extensive sharing of binding sites
-
Boergesen M, Pedersen T, Gross B, van Heeringen SJ, Hagenbeek D, Bindesbll C, Caron S, Lalloyer F, Steffensen KR, Nebb HI, et al. 2012. Genome-wide profiling of liver X receptor, retinoid X receptor, and peroxisome proliferator-activated receptor a in mouse liver reveals extensive sharing of binding sites. Mol Cell Biol 32: 852-867.
-
(2012)
Mol Cell Biol
, vol.32
, pp. 852-867
-
-
Boergesen, M.1
Pedersen, T.2
Gross, B.3
Van Heeringen, S.J.4
Hagenbeek, D.5
Bindesbll, C.6
Caron, S.7
Lalloyer, F.8
Steffensen, K.R.9
Nebb, H.I.10
-
7
-
-
33644530060
-
A hyper-dynamic equilibrium between promoter-bound and nucleoplasmic dimers controls NF-B-dependent gene activity
-
Bosisio D, Marazzi I, Agresti A, Shimizu N, Bianchi ME, Natoli G. 2006. A hyper-dynamic equilibrium between promoter-bound and nucleoplasmic dimers controls NF-B-dependent gene activity. EMBO J 25: 798-810.
-
(2006)
EMBO J
, vol.25
, pp. 798-810
-
-
Bosisio, D.1
Marazzi, I.2
Agresti, A.3
Shimizu, N.4
Bianchi, M.E.5
Natoli, G.6
-
8
-
-
0031051692
-
RU486 (mifepristone): Mechanisms of action and clinical uses
-
Cadepond F, Ulmann A, Baulieu EE. 1997. RU486 (mifepristone): mechanisms of action and clinical uses. Annu Rev Med 48: 129-156.
-
(1997)
Annu Rev Med
, vol.48
, pp. 129-156
-
-
Cadepond, F.1
Ulmann, A.2
Baulieu, E.E.3
-
9
-
-
33750110683
-
Fuel metabolism in starvation
-
Cahill GF Jr. 2006. Fuel metabolism in starvation. Annu Rev Nutr 26: 1-22.
-
(2006)
Annu Rev Nutr
, vol.26
, pp. 1-22
-
-
Cahill, G.F.1
-
10
-
-
10944248801
-
Mouse functional genomics requires standardization of mouse handling and housing conditions
-
Champy MF, Selloum M, Piard L, Zeitler V, Caradec C, Chambon P, Auwerx J. 2004. Mouse functional genomics requires standardization of mouse handling and housing conditions. Mamm Genome 15: 768-783.
-
(2004)
Mamm Genome
, vol.15
, pp. 768-783
-
-
Champy, M.F.1
Selloum, M.2
Piard, L.3
Zeitler, V.4
Caradec, C.5
Chambon, P.6
Auwerx, J.7
-
11
-
-
84896338378
-
Single-molecule dynamics of enhanceosome assembly in embryonic stem cells
-
Chen J, Zhang Z, Li L, Chen BC, Revyakin A, Hajj B, Legant W, Dahan M, Lionnet T, Betzig E, et al. 2014. Single-molecule dynamics of enhanceosome assembly in embryonic stem cells. Cell 156: 1274-1285.
-
(2014)
Cell
, vol.156
, pp. 1274-1285
-
-
Chen, J.1
Zhang, Z.2
Li, L.3
Chen, B.C.4
Revyakin, A.5
Hajj, B.6
Legant, W.7
Dahan, M.8
Lionnet, T.9
Betzig, E.10
-
12
-
-
0034924715
-
Review article: Regulation of glucose production with special attention to nonclassical regulatory mechanisms: A review
-
Corssmit EP, Romijn JA, Sauerwein HP. 2001. Review article: Regulation of glucose production with special attention to nonclassical regulatory mechanisms: a review. Metabolism 50: 742-755.
-
(2001)
Metabolism
, vol.50
, pp. 742-755
-
-
Corssmit, E.P.1
Romijn, J.A.2
Sauerwein, H.P.3
-
13
-
-
78650758676
-
Histone H3K27ac separates active from poised enhancers and predicts developmental state
-
Creyghton MP, Cheng AW, Welstead GG, Kooistra T, Carey BW, Steine EJ, Hanna J, Lodato MA, Frampton GM, Sharp PA, et al. 2010. Histone H3K27ac separates active from poised enhancers and predicts developmental state. Proc Natl Acad Sci 107: 21931-21936.
-
(2010)
Proc Natl Acad Sci
, vol.107
, pp. 21931-21936
-
-
Creyghton, M.P.1
Cheng, A.W.2
Welstead, G.G.3
Kooistra, T.4
Carey, B.W.5
Steine, E.J.6
Hanna, J.7
Lodato, M.A.8
Frampton, G.M.9
Sharp, P.A.10
-
14
-
-
0018199224
-
DNAse footprinting: A simple method for the detection of protein-DNA binding specificity
-
Galas DJ, Schmitz A. 1978. DNAse footprinting: a simple method for the detection of protein-DNA binding specificity. Nucleic Acids Res 5: 3157-3170.
-
(1978)
Nucleic Acids Res
, vol.5
, pp. 3157-3170
-
-
Galas, D.J.1
Schmitz, A.2
-
15
-
-
84949570407
-
Transcriptional and chromatin regulation during fasting-the genomic era
-
Goldstein I, Hager GL. 2015. Transcriptional and chromatin regulation during fasting-the genomic era. Trends Endocrinol Metab 26: 699-710.
-
(2015)
Trends Endocrinol Metab
, vol.26
, pp. 699-710
-
-
Goldstein, I.1
Hager, G.L.2
-
16
-
-
84884560637
-
P53 promotes the expression of gluconeogenesis-related genes and enhances hepatic glucose production
-
Goldstein I, Yizhak K, Madar S, Goldfinger N, Ruppin E, Rotter V. 2013. p53 promotes the expression of gluconeogenesis-related genes and enhances hepatic glucose production. Cancer Metab 1: 9.
-
(2013)
Cancer Metab
, vol.1
, pp. 9
-
-
Goldstein, I.1
Yizhak, K.2
Madar, S.3
Goldfinger, N.4
Ruppin, E.5
Rotter, V.6
-
17
-
-
84923803017
-
A general method to improve fluorophores for live-cell and single-molecule microscopy
-
Grimm JB, English BP, Chen J, Slaughter JP, Zhang Z, Revyakin A, Patel R, Macklin JJ, Normanno D, Singer RH, et al. 2015. A general method to improve fluorophores for live-cell and single-molecule microscopy. Nat Methods 12: 244-250.
-
(2015)
Nat Methods
, vol.12
, pp. 244-250
-
-
Grimm, J.B.1
English, B.P.2
Chen, J.3
Slaughter, J.P.4
Zhang, Z.5
Revyakin, A.6
Patel, R.7
MacKlin, J.J.8
Normanno, D.9
Singer, R.H.10
-
18
-
-
84862645458
-
Rapid genome-scale mapping of chromatin accessibility in tissue
-
Grøntved L, Bandle R, John S, Baek S, Chung HJ, Liu Y, Aguilera G, Oberholtzer C, Hager GL, Levens D. 2012. Rapid genome-scale mapping of chromatin accessibility in tissue. Epigenetics Chromatin 5: 1-12.
-
(2012)
Epigenetics Chromatin
, vol.5
, pp. 1-12
-
-
Grøntved, L.1
Bandle, R.2
John, S.3
Baek, S.4
Chung, H.J.5
Liu, Y.6
Aguilera, G.7
Oberholtzer, C.8
Hager, G.L.9
Levens, D.10
-
19
-
-
84878547373
-
C/EBP maintains chromatin accessibility in liver and facilitates glucocorticoid receptor recruitment to steroid response elements
-
Grøntved L, John S, Baek S, Liu Y, Buckley JR, Vinson C, Aguilera G, Hager GL. 2013. C/EBP maintains chromatin accessibility in liver and facilitates glucocorticoid receptor recruitment to steroid response elements. EMBO J 32: 1568-1583.
-
(2013)
EMBO J
, vol.32
, pp. 1568-1583
-
-
Grøntved, L.1
John, S.2
Baek, S.3
Liu, Y.4
Buckley, J.R.5
Vinson, C.6
Aguilera, G.7
Hager, G.L.8
-
20
-
-
84928788176
-
Transcriptional activation by the thyroid hormone receptor through ligand dependent receptor recruitment and chromatin remodeling
-
Grøntved L, Waterfall JJ, Kim DW, Baek S, Sung MH, Zhao L, Park JW, Nielsen R, Walker RL, Zhu YJ, et al. 2015. Transcriptional activation by the thyroid hormone receptor through ligand dependent receptor recruitment and chromatin remodeling. Nat Commun 6: 7048.
-
(2015)
Nat Commun
, vol.6
, pp. 7048
-
-
Grøntved, L.1
Waterfall, J.J.2
Kim, D.W.3
Baek, S.4
Sung, M.H.5
Zhao, L.6
Park, J.W.7
Nielsen, R.8
Walker, R.L.9
Zhu, Y.J.10
-
21
-
-
84959116092
-
Analysis of computational footprinting methods for DNase sequencing experiments
-
Gusmao EG, Allhoff M, Zenke M, Costa IG. 2016. Analysis of computational footprinting methods for DNase sequencing experiments. Nat Methods 13: 303-309.
-
(2016)
Nat Methods
, vol.13
, pp. 303-309
-
-
Gusmao, E.G.1
Allhoff, M.2
Zenke, M.3
Costa, I.G.4
-
22
-
-
77952567987
-
Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
-
Heinz S, Benner C, Spann N, Bertolino E, Lin YC, Laslo P, Cheng JX, Murre C, Singh H, Glass CK. 2010. Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol Cell 38: 576-589.
-
(2010)
Mol Cell
, vol.38
, pp. 576-589
-
-
Heinz, S.1
Benner, C.2
Spann, N.3
Bertolino, E.4
Lin, Y.C.5
Laslo, P.6
Cheng, J.X.7
Murre, C.8
Singh, H.9
Glass, C.K.10
-
23
-
-
63849308888
-
Global mapping of protein-DNA interactions in vivo by digital genomic footprinting
-
Hesselberth JR, Zhang Z, Sabo PJ, Chen X, Sandstrom R, Reynolds AP, Thurman RE, Neph S, Kuehn MS, Noble WS, et al. 2009. Global mapping of protein-DNA interactions in vivo by digital genomic footprinting. Nat Methods 6: 283-289.
-
(2009)
Nat Methods
, vol.6
, pp. 283-289
-
-
Hesselberth, J.R.1
Zhang, Z.2
Sabo, P.J.3
Chen, X.4
Sandstrom, R.5
Reynolds, A.P.6
Thurman, R.E.7
Neph, S.8
Kuehn, M.S.9
Noble, W.S.10
-
24
-
-
84903392046
-
Single-molecule tracking in live cells reveals distinct target-search strategies of transcription factors in the nucleus
-
Izeddin I, Récamier V, Bosanac L, Cissé II, Boudarene L, Dugast-Darzacq C, Proux F, Bénichou O, Voituriez R, Bensaude O, et al. 2014. Single-molecule tracking in live cells reveals distinct target-search strategies of transcription factors in the nucleus. eLife 3: e02230.
-
(2014)
ELife
, vol.3
, pp. e02230
-
-
Izeddin, I.1
Récamier, V.2
Bosanac, L.3
Cissé, I.I.4
Boudarene, L.5
Dugast-Darzacq, C.6
Proux, F.7
Bénichou, O.8
Voituriez, R.9
Bensaude, O.10
-
25
-
-
0028003839
-
Regulation of the peroxisome proliferator-activated receptor a gene by glucocorticoids
-
Lemberger T, Staels B, Saladin R, Desvergne B, Auwerx J, Wahli W. 1994. Regulation of the peroxisome proliferator-activated receptor a gene by glucocorticoids. J Biol Chem 269: 24527-24530.
-
(1994)
J Biol Chem
, vol.269
, pp. 24527-24530
-
-
Lemberger, T.1
Staels, B.2
Saladin, R.3
Desvergne, B.4
Auwerx, J.5
Wahli, W.6
-
26
-
-
84894235553
-
Peroxisome proliferator-activated receptor and C/EBPa synergistically activate key metabolic adipocyte genes by assisted loading
-
Madsen MS, Siersbak R, Boergesen M, Nielsen R, Mandrup S. 2014. Peroxisome proliferator-activated receptor and C/EBPa synergistically activate key metabolic adipocyte genes by assisted loading. Mol Cell Biol 34: 939-954.
-
(2014)
Mol Cell Biol
, vol.34
, pp. 939-954
-
-
Madsen, M.S.1
Siersbak, R.2
Boergesen, M.3
Nielsen, R.4
Mandrup, S.5
-
27
-
-
0343415609
-
The glucocorticoid receptor: Rapid exchange with regulatory sites in living cells
-
McNally JG, Müller WG, Walker D, Wolford RG, Hager GL. 2000. The glucocorticoid receptor: rapid exchange with regulatory sites in living cells. Science 287: 1262-1265.
-
(2000)
Science
, vol.287
, pp. 1262-1265
-
-
McNally, J.G.1
Müller, W.G.2
Walker, D.3
Wolford, R.G.4
Hager, G.L.5
-
28
-
-
84882600977
-
Reprogramming of the chromatin landscape: Interplay of the estrogen and glucocorticoid receptors at the genomic level
-
Miranda TB, Voss TC, Sung MH, Baek S, John S, Hawkins M, Grøntved L, Schiltz RL, Hager GL. 2013. Reprogramming of the chromatin landscape: interplay of the estrogen and glucocorticoid receptors at the genomic level. Cancer Res 73: 5130-5139.
-
(2013)
Cancer Res
, vol.73
, pp. 5130-5139
-
-
Miranda, T.B.1
Voss, T.C.2
Sung, M.H.3
Baek, S.4
John, S.5
Hawkins, M.6
Grøntved, L.7
Schiltz, R.L.8
Hager, G.L.9
-
29
-
-
84904695330
-
Single-molecule analysis of transcription factor binding at transcription sites in live cells
-
Morisaki T, Müller WG, Golob N, Mazza D, McNally JG. 2014. Single-molecule analysis of transcription factor binding at transcription sites in live cells. Nat Commun 5: 4456.
-
(2014)
Nat Commun
, vol.5
, pp. 4456
-
-
Morisaki, T.1
Müller, W.G.2
Golob, N.3
Mazza, D.4
McNally, J.G.5
-
31
-
-
64049109876
-
STAT3 inhibition of gluconeogenesis is downregulated by SirT1
-
Nie Y, Erion DM, Yuan Z, Dietrich M, Shulman GI, Horvath TL, Gao Q. 2009. STAT3 inhibition of gluconeogenesis is downregulated by SirT1. Nat Cell Biol 11: 492-500.
-
(2009)
Nat Cell Biol
, vol.11
, pp. 492-500
-
-
Nie, Y.1
Erion, D.M.2
Yuan, Z.3
Dietrich, M.4
Shulman, G.I.5
Horvath, T.L.6
Gao, Q.7
-
32
-
-
84872522528
-
Latent enhancers activated by stimulation in differentiated cells
-
Ostuni R, Piccolo V, Barozzi I, Polletti S, Termanini A, Bonifacio S, Curina A, Prosperini E, Ghisletti S, Natoli G. 2013. Latent enhancers activated by stimulation in differentiated cells. Cell 152: 157-171.
-
(2013)
Cell
, vol.152
, pp. 157-171
-
-
Ostuni, R.1
Piccolo, V.2
Barozzi, I.3
Polletti, S.4
Termanini, A.5
Bonifacio, S.6
Curina, A.7
Prosperini, E.8
Ghisletti, S.9
Natoli, G.10
-
33
-
-
33750451557
-
Estrogen-receptor-a exchange and chromatin dynamics are ligand-and domain-dependent
-
Sharp ZD, Mancini MG, Hinojos CA, Dai F, Berno V, Szafran AT, Smith KP, Lele TT, Ingber DE, Mancini MA. 2006. Estrogen-receptor-a exchange and chromatin dynamics are ligand-and domain-dependent. J Cell Sci 119: 4101-4116.
-
(2006)
J Cell Sci
, vol.119
, pp. 4101-4116
-
-
Sharp, Z.D.1
Mancini, M.G.2
Hinojos, C.A.3
Dai, F.4
Berno, V.5
Szafran, A.T.6
Smith, K.P.7
Lele, T.T.8
Ingber, D.E.9
Mancini, M.A.10
-
34
-
-
84893863046
-
Discovery of directional and nondirectional pioneer transcription factors by modeling DNase profile magnitude and shape
-
Sherwood RI, Hashimoto T, O'DonnellCW, Lewis S, Barkal AA, van Hoff JP, Karun V, Jaakkola T, Gifford DK. 2014. Discovery of directional and nondirectional pioneer transcription factors by modeling DNase profile magnitude and shape. Nat Biotechnol 32: 171-178.
-
(2014)
Nat Biotechnol
, vol.32
, pp. 171-178
-
-
Sherwood, R.I.1
Hashimoto, T.2
O'Donnell, C.W.3
Lewis, S.4
Barkal, A.A.5
Van Hoff, J.P.6
Karun, V.7
Jaakkola, T.8
Gifford, D.K.9
-
35
-
-
84899450857
-
Transcriptional enhancers: From properties to genome-wide predictions
-
Shlyueva D, Stampfel G, Stark A. 2014. Transcriptional enhancers: from properties to genome-wide predictions. Nat Rev Genet 15: 272-286.
-
(2014)
Nat Rev Genet
, vol.15
, pp. 272-286
-
-
Shlyueva, D.1
Stampfel, G.2
Stark, A.3
-
36
-
-
84934325147
-
Genetic variation determines PPAR? Function and anti-diabetic drug response in vivo
-
Soccio RE, Chen ER, Rajapurkar SR, Safabakhsh P, Marinis JM, Dispirito JR, Emmett MJ, Briggs ER, Fang B, Everett LJ, et al. 2015. Genetic variation determines PPAR? function and anti-diabetic drug response in vivo. Cell 162: 33-44.
-
(2015)
Cell
, vol.162
, pp. 33-44
-
-
Soccio, R.E.1
Chen, E.R.2
Rajapurkar, S.R.3
Safabakhsh, P.4
Marinis, J.M.5
Dispirito, J.R.6
Emmett, M.J.7
Briggs, E.R.8
Fang, B.9
Everett, L.J.10
-
37
-
-
84865249952
-
Transcription factors: From enhancer binding to developmental control
-
Spitz F, Furlong EE. 2012. Transcription factors: from enhancer binding to developmental control. Nat Rev Genet 13: 613-626.
-
(2012)
Nat Rev Genet
, vol.13
, pp. 613-626
-
-
Spitz, F.1
Furlong, E.E.2
-
38
-
-
69949126005
-
Ultradian hormone stimulation induces glucocorticoid receptor-mediated pulses of gene transcription
-
Stavreva DA, Wiench M, John S, Conway-Campbell BL, McKenna MA, Pooley JR, Johnson TA, Voss TC, Lightman SL, Hager GL. 2009. Ultradian hormone stimulation induces glucocorticoid receptor-mediated pulses of gene transcription. Nat Cell Biol 11: 1093-1102.
-
(2009)
Nat Cell Biol
, vol.11
, pp. 1093-1102
-
-
Stavreva, D.A.1
Wiench, M.2
John, S.3
Conway-Campbell, B.L.4
McKenna, M.A.5
Pooley, J.R.6
Johnson, T.A.7
Voss, T.C.8
Lightman, S.L.9
Hager, G.L.10
-
39
-
-
0028131951
-
Dexamethasone and insulin demonstrate marked and opposite regulation of the steady-state mRNA level of the peroxisomal proliferator-activated receptor (PPAR) in hepatic cells. Hormonal modulation of fatty-acid-induced transcription
-
Steineger HH, Sørensen HN, Tugwood JD, Skrede S, Spydevold O, Gautvik KM. 1994. Dexamethasone and insulin demonstrate marked and opposite regulation of the steady-state mRNA level of the peroxisomal proliferator-activated receptor (PPAR) in hepatic cells. Hormonal modulation of fatty-acid-induced transcription. Eur J Biochem 225: 967-974.
-
(1994)
Eur J Biochem
, vol.225
, pp. 967-974
-
-
Steineger, H.H.1
Sørensen, H.N.2
Tugwood, J.D.3
Skrede, S.4
Spydevold, O.5
Gautvik, K.M.6
-
40
-
-
84922589001
-
DNase footprint signatures are dictated by factor dynamics and DNA sequence
-
Sung MH, Guertin MJ, Baek S, Hager GL. 2014. DNase footprint signatures are dictated by factor dynamics and DNA sequence. Mol Cell 56: 275-285.
-
(2014)
Mol Cell
, vol.56
, pp. 275-285
-
-
Sung, M.H.1
Guertin, M.J.2
Baek, S.3
Hager, G.L.4
-
41
-
-
84959449100
-
Genome-wide footprinting: Ready for prime time?
-
Sung MH, Baek S, Hager GL. 2016. Genome-wide footprinting: ready for prime time? Nat Methods 13: 222-228.
-
(2016)
Nat Methods
, vol.13
, pp. 222-228
-
-
Sung, M.H.1
Baek, S.2
Hager, G.L.3
-
42
-
-
84962630625
-
Steroid receptors reprogram FoxA1 occupancy through dynamic chromatin transitions
-
Swinstead EE, Miranda TB, Paakinaho V, Baek S, Goldstein I, Hawkins M, Karpova TS, Ball D, Mazza D, Lavis LD, et al. 2016. Steroid receptors reprogram FoxA1 occupancy through dynamic chromatin transitions. Cell 165: 593-605.
-
(2016)
Cell
, vol.165
, pp. 593-605
-
-
Swinstead, E.E.1
Miranda, T.B.2
Paakinaho, V.3
Baek, S.4
Goldstein, I.5
Hawkins, M.6
Karpova, T.S.7
Ball, D.8
Mazza, D.9
Lavis, L.D.10
-
43
-
-
84865755978
-
The accessible chromatin landscape of the human genome
-
Thurman RE, Rynes E, Humbert R, Vierstra J, Maurano MT, Haugen E, Sheffield NC, Stergachis AB, Wang H, Vernot B, et al. 2012. The accessible chromatin landscape of the human genome. Nature 489: 75-82.
-
(2012)
Nature
, vol.489
, pp. 75-82
-
-
Thurman, R.E.1
Rynes, E.2
Humbert, R.3
Vierstra, J.4
Maurano, M.T.5
Haugen, E.6
Sheffield, N.C.7
Stergachis, A.B.8
Wang, H.9
Vernot, B.10
-
44
-
-
38749118235
-
Highly inclined thin illumination enables clear single-molecule imaging in cells
-
Tokunaga M, Imamoto N, Sakata-Sogawa K. 2008. Highly inclined thin illumination enables clear single-molecule imaging in cells. Nat Methods 5: 159-161.
-
(2008)
Nat Methods
, vol.5
, pp. 159-161
-
-
Tokunaga, M.1
Imamoto, N.2
Sakata-Sogawa, K.3
-
45
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, Salzberg SL, Wold BJ, Pachter L. 2010. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol 28: 511-515.
-
(2010)
Nat Biotechnol
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
Williams, B.A.2
Pertea, G.3
Mortazavi, A.4
Kwan, G.5
Van Baren, M.J.6
Salzberg, S.L.7
Wold, B.J.8
Pachter, L.9
-
46
-
-
84872198346
-
Differential analysis of gene regulation at transcript resolution with RNA-seq
-
Trapnell C, Hendrickson DG, Sauvageau M, Goff L, Rinn JL, Pachter L. 2013. Differential analysis of gene regulation at transcript resolution with RNA-seq. Nat Biotechnol 31: 46-53.
-
(2013)
Nat Biotechnol
, vol.31
, pp. 46-53
-
-
Trapnell, C.1
Hendrickson, D.G.2
Sauvageau, M.3
Goff, L.4
Rinn, J.L.5
Pachter, L.6
-
47
-
-
84892800329
-
Dynamic regulation of transcriptional states by chromatin and transcription factors
-
Voss TC, Hager GL. 2014. Dynamic regulation of transcriptional states by chromatin and transcription factors. Nat Rev Genet 15: 69-81.
-
(2014)
Nat Rev Genet
, vol.15
, pp. 69-81
-
-
Voss, T.C.1
Hager, G.L.2
-
48
-
-
80052000538
-
Dynamic exchange at regulatory elements during chromatin remodeling underlies assisted loading mechanism
-
Voss TC, Schiltz RL, Sung MH, Yen PM, Stamatoyannopoulos JA, Biddie SC, Johnson TA, Miranda TB, John S, Hager GL. 2011. Dynamic exchange at regulatory elements during chromatin remodeling underlies assisted loading mechanism. Cell 146: 544-554.
-
(2011)
Cell
, vol.146
, pp. 544-554
-
-
Voss, T.C.1
Schiltz, R.L.2
Sung, M.H.3
Yen, P.M.4
Stamatoyannopoulos, J.A.5
Biddie, S.C.6
Johnson, T.A.7
Miranda, T.B.8
John, S.9
Hager, G.L.10
-
49
-
-
84952871218
-
Coactivator-dependent oscillation of chromatin accessibility dictates circadian gene amplitude via REV-ERB loading
-
Zhu B, Gates LA, Stashi E, Dasgupta S, Gonzales N, Dean A, Dacso CC, York B, O'Malley BW. 2015. Coactivator-dependent oscillation of chromatin accessibility dictates circadian gene amplitude via REV-ERB loading. Mol Cell 60: 769-783.
-
(2015)
Mol Cell
, vol.60
, pp. 769-783
-
-
Zhu, B.1
Gates, L.A.2
Stashi, E.3
Dasgupta, S.4
Gonzales, N.5
Dean, A.6
Dacso, C.C.7
York, B.8
O'Malley, B.W.9
|