메뉴 건너뛰기




Volumn 27, Issue 3, 2017, Pages 427-439

Transcription factor assisted loading and enhancer dynamics dictate the hepatic fasting response

Author keywords

[No Author keywords available]

Indexed keywords

CCAAT ENHANCER BINDING PROTEIN BETA; CYCLIC AMP RESPONSIVE ELEMENT BINDING PROTEIN; DNA; GLUCOCORTICOID RECEPTOR; PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR; PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR ALPHA; TRANSCRIPTION FACTOR; CEBPB PROTEIN, MOUSE; CREB1 PROTEIN, MOUSE; GLUCOSE; KETONE;

EID: 85016485849     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.212175.116     Document Type: Article
Times cited : (83)

References (49)
  • 1
    • 79951962147 scopus 로고    scopus 로고
    • CREB and the CRTC co-activators: Sensors for hormonal and metabolic signals
    • Altarejos JY, Montminy M. 2011. CREB and the CRTC co-activators: sensors for hormonal and metabolic signals. Nat Rev Mol Cell Biol 12: 141-151.
    • (2011) Nat Rev Mol Cell Biol , vol.12 , pp. 141-151
    • Altarejos, J.Y.1    Montminy, M.2
  • 2
    • 77958471357 scopus 로고    scopus 로고
    • Differential expression analysis for sequence count data
    • Anders S, Huber W. 2010. Differential expression analysis for sequence count data. Genome Biol 11: R106.
    • (2010) Genome Biol , vol.11 , pp. R106
    • Anders, S.1    Huber, W.2
  • 3
    • 84855878190 scopus 로고    scopus 로고
    • Quantitative analysis of genome-wide chromatin remodeling
    • Baek S, Sung MH, Hager GL. 2012. Quantitative analysis of genome-wide chromatin remodeling. Methods Mol Biol 833: 433-441.
    • (2012) Methods Mol Biol , vol.833 , pp. 433-441
    • Baek, S.1    Sung, M.H.2    Hager, G.L.3
  • 6
    • 84856777771 scopus 로고    scopus 로고
    • Genome-wide profiling of liver X receptor, retinoid X receptor, and peroxisome proliferator-activated receptor a in mouse liver reveals extensive sharing of binding sites
    • Boergesen M, Pedersen T, Gross B, van Heeringen SJ, Hagenbeek D, Bindesbll C, Caron S, Lalloyer F, Steffensen KR, Nebb HI, et al. 2012. Genome-wide profiling of liver X receptor, retinoid X receptor, and peroxisome proliferator-activated receptor a in mouse liver reveals extensive sharing of binding sites. Mol Cell Biol 32: 852-867.
    • (2012) Mol Cell Biol , vol.32 , pp. 852-867
    • Boergesen, M.1    Pedersen, T.2    Gross, B.3    Van Heeringen, S.J.4    Hagenbeek, D.5    Bindesbll, C.6    Caron, S.7    Lalloyer, F.8    Steffensen, K.R.9    Nebb, H.I.10
  • 7
    • 33644530060 scopus 로고    scopus 로고
    • A hyper-dynamic equilibrium between promoter-bound and nucleoplasmic dimers controls NF-B-dependent gene activity
    • Bosisio D, Marazzi I, Agresti A, Shimizu N, Bianchi ME, Natoli G. 2006. A hyper-dynamic equilibrium between promoter-bound and nucleoplasmic dimers controls NF-B-dependent gene activity. EMBO J 25: 798-810.
    • (2006) EMBO J , vol.25 , pp. 798-810
    • Bosisio, D.1    Marazzi, I.2    Agresti, A.3    Shimizu, N.4    Bianchi, M.E.5    Natoli, G.6
  • 8
    • 0031051692 scopus 로고    scopus 로고
    • RU486 (mifepristone): Mechanisms of action and clinical uses
    • Cadepond F, Ulmann A, Baulieu EE. 1997. RU486 (mifepristone): mechanisms of action and clinical uses. Annu Rev Med 48: 129-156.
    • (1997) Annu Rev Med , vol.48 , pp. 129-156
    • Cadepond, F.1    Ulmann, A.2    Baulieu, E.E.3
  • 9
    • 33750110683 scopus 로고    scopus 로고
    • Fuel metabolism in starvation
    • Cahill GF Jr. 2006. Fuel metabolism in starvation. Annu Rev Nutr 26: 1-22.
    • (2006) Annu Rev Nutr , vol.26 , pp. 1-22
    • Cahill, G.F.1
  • 12
    • 0034924715 scopus 로고    scopus 로고
    • Review article: Regulation of glucose production with special attention to nonclassical regulatory mechanisms: A review
    • Corssmit EP, Romijn JA, Sauerwein HP. 2001. Review article: Regulation of glucose production with special attention to nonclassical regulatory mechanisms: a review. Metabolism 50: 742-755.
    • (2001) Metabolism , vol.50 , pp. 742-755
    • Corssmit, E.P.1    Romijn, J.A.2    Sauerwein, H.P.3
  • 14
    • 0018199224 scopus 로고
    • DNAse footprinting: A simple method for the detection of protein-DNA binding specificity
    • Galas DJ, Schmitz A. 1978. DNAse footprinting: a simple method for the detection of protein-DNA binding specificity. Nucleic Acids Res 5: 3157-3170.
    • (1978) Nucleic Acids Res , vol.5 , pp. 3157-3170
    • Galas, D.J.1    Schmitz, A.2
  • 15
    • 84949570407 scopus 로고    scopus 로고
    • Transcriptional and chromatin regulation during fasting-the genomic era
    • Goldstein I, Hager GL. 2015. Transcriptional and chromatin regulation during fasting-the genomic era. Trends Endocrinol Metab 26: 699-710.
    • (2015) Trends Endocrinol Metab , vol.26 , pp. 699-710
    • Goldstein, I.1    Hager, G.L.2
  • 16
    • 84884560637 scopus 로고    scopus 로고
    • P53 promotes the expression of gluconeogenesis-related genes and enhances hepatic glucose production
    • Goldstein I, Yizhak K, Madar S, Goldfinger N, Ruppin E, Rotter V. 2013. p53 promotes the expression of gluconeogenesis-related genes and enhances hepatic glucose production. Cancer Metab 1: 9.
    • (2013) Cancer Metab , vol.1 , pp. 9
    • Goldstein, I.1    Yizhak, K.2    Madar, S.3    Goldfinger, N.4    Ruppin, E.5    Rotter, V.6
  • 19
    • 84878547373 scopus 로고    scopus 로고
    • C/EBP maintains chromatin accessibility in liver and facilitates glucocorticoid receptor recruitment to steroid response elements
    • Grøntved L, John S, Baek S, Liu Y, Buckley JR, Vinson C, Aguilera G, Hager GL. 2013. C/EBP maintains chromatin accessibility in liver and facilitates glucocorticoid receptor recruitment to steroid response elements. EMBO J 32: 1568-1583.
    • (2013) EMBO J , vol.32 , pp. 1568-1583
    • Grøntved, L.1    John, S.2    Baek, S.3    Liu, Y.4    Buckley, J.R.5    Vinson, C.6    Aguilera, G.7    Hager, G.L.8
  • 21
    • 84959116092 scopus 로고    scopus 로고
    • Analysis of computational footprinting methods for DNase sequencing experiments
    • Gusmao EG, Allhoff M, Zenke M, Costa IG. 2016. Analysis of computational footprinting methods for DNase sequencing experiments. Nat Methods 13: 303-309.
    • (2016) Nat Methods , vol.13 , pp. 303-309
    • Gusmao, E.G.1    Allhoff, M.2    Zenke, M.3    Costa, I.G.4
  • 22
    • 77952567987 scopus 로고    scopus 로고
    • Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
    • Heinz S, Benner C, Spann N, Bertolino E, Lin YC, Laslo P, Cheng JX, Murre C, Singh H, Glass CK. 2010. Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol Cell 38: 576-589.
    • (2010) Mol Cell , vol.38 , pp. 576-589
    • Heinz, S.1    Benner, C.2    Spann, N.3    Bertolino, E.4    Lin, Y.C.5    Laslo, P.6    Cheng, J.X.7    Murre, C.8    Singh, H.9    Glass, C.K.10
  • 25
    • 0028003839 scopus 로고
    • Regulation of the peroxisome proliferator-activated receptor a gene by glucocorticoids
    • Lemberger T, Staels B, Saladin R, Desvergne B, Auwerx J, Wahli W. 1994. Regulation of the peroxisome proliferator-activated receptor a gene by glucocorticoids. J Biol Chem 269: 24527-24530.
    • (1994) J Biol Chem , vol.269 , pp. 24527-24530
    • Lemberger, T.1    Staels, B.2    Saladin, R.3    Desvergne, B.4    Auwerx, J.5    Wahli, W.6
  • 26
    • 84894235553 scopus 로고    scopus 로고
    • Peroxisome proliferator-activated receptor and C/EBPa synergistically activate key metabolic adipocyte genes by assisted loading
    • Madsen MS, Siersbak R, Boergesen M, Nielsen R, Mandrup S. 2014. Peroxisome proliferator-activated receptor and C/EBPa synergistically activate key metabolic adipocyte genes by assisted loading. Mol Cell Biol 34: 939-954.
    • (2014) Mol Cell Biol , vol.34 , pp. 939-954
    • Madsen, M.S.1    Siersbak, R.2    Boergesen, M.3    Nielsen, R.4    Mandrup, S.5
  • 27
    • 0343415609 scopus 로고    scopus 로고
    • The glucocorticoid receptor: Rapid exchange with regulatory sites in living cells
    • McNally JG, Müller WG, Walker D, Wolford RG, Hager GL. 2000. The glucocorticoid receptor: rapid exchange with regulatory sites in living cells. Science 287: 1262-1265.
    • (2000) Science , vol.287 , pp. 1262-1265
    • McNally, J.G.1    Müller, W.G.2    Walker, D.3    Wolford, R.G.4    Hager, G.L.5
  • 29
    • 84904695330 scopus 로고    scopus 로고
    • Single-molecule analysis of transcription factor binding at transcription sites in live cells
    • Morisaki T, Müller WG, Golob N, Mazza D, McNally JG. 2014. Single-molecule analysis of transcription factor binding at transcription sites in live cells. Nat Commun 5: 4456.
    • (2014) Nat Commun , vol.5 , pp. 4456
    • Morisaki, T.1    Müller, W.G.2    Golob, N.3    Mazza, D.4    McNally, J.G.5
  • 35
    • 84899450857 scopus 로고    scopus 로고
    • Transcriptional enhancers: From properties to genome-wide predictions
    • Shlyueva D, Stampfel G, Stark A. 2014. Transcriptional enhancers: from properties to genome-wide predictions. Nat Rev Genet 15: 272-286.
    • (2014) Nat Rev Genet , vol.15 , pp. 272-286
    • Shlyueva, D.1    Stampfel, G.2    Stark, A.3
  • 37
    • 84865249952 scopus 로고    scopus 로고
    • Transcription factors: From enhancer binding to developmental control
    • Spitz F, Furlong EE. 2012. Transcription factors: from enhancer binding to developmental control. Nat Rev Genet 13: 613-626.
    • (2012) Nat Rev Genet , vol.13 , pp. 613-626
    • Spitz, F.1    Furlong, E.E.2
  • 39
    • 0028131951 scopus 로고
    • Dexamethasone and insulin demonstrate marked and opposite regulation of the steady-state mRNA level of the peroxisomal proliferator-activated receptor (PPAR) in hepatic cells. Hormonal modulation of fatty-acid-induced transcription
    • Steineger HH, Sørensen HN, Tugwood JD, Skrede S, Spydevold O, Gautvik KM. 1994. Dexamethasone and insulin demonstrate marked and opposite regulation of the steady-state mRNA level of the peroxisomal proliferator-activated receptor (PPAR) in hepatic cells. Hormonal modulation of fatty-acid-induced transcription. Eur J Biochem 225: 967-974.
    • (1994) Eur J Biochem , vol.225 , pp. 967-974
    • Steineger, H.H.1    Sørensen, H.N.2    Tugwood, J.D.3    Skrede, S.4    Spydevold, O.5    Gautvik, K.M.6
  • 40
    • 84922589001 scopus 로고    scopus 로고
    • DNase footprint signatures are dictated by factor dynamics and DNA sequence
    • Sung MH, Guertin MJ, Baek S, Hager GL. 2014. DNase footprint signatures are dictated by factor dynamics and DNA sequence. Mol Cell 56: 275-285.
    • (2014) Mol Cell , vol.56 , pp. 275-285
    • Sung, M.H.1    Guertin, M.J.2    Baek, S.3    Hager, G.L.4
  • 41
    • 84959449100 scopus 로고    scopus 로고
    • Genome-wide footprinting: Ready for prime time?
    • Sung MH, Baek S, Hager GL. 2016. Genome-wide footprinting: ready for prime time? Nat Methods 13: 222-228.
    • (2016) Nat Methods , vol.13 , pp. 222-228
    • Sung, M.H.1    Baek, S.2    Hager, G.L.3
  • 44
    • 38749118235 scopus 로고    scopus 로고
    • Highly inclined thin illumination enables clear single-molecule imaging in cells
    • Tokunaga M, Imamoto N, Sakata-Sogawa K. 2008. Highly inclined thin illumination enables clear single-molecule imaging in cells. Nat Methods 5: 159-161.
    • (2008) Nat Methods , vol.5 , pp. 159-161
    • Tokunaga, M.1    Imamoto, N.2    Sakata-Sogawa, K.3
  • 47
    • 84892800329 scopus 로고    scopus 로고
    • Dynamic regulation of transcriptional states by chromatin and transcription factors
    • Voss TC, Hager GL. 2014. Dynamic regulation of transcriptional states by chromatin and transcription factors. Nat Rev Genet 15: 69-81.
    • (2014) Nat Rev Genet , vol.15 , pp. 69-81
    • Voss, T.C.1    Hager, G.L.2
  • 49


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.