메뉴 건너뛰기




Volumn 6, Issue , 2015, Pages

Transcriptional activation by the thyroid hormone receptor through ligand-dependent receptor recruitment and chromatin remodelling

Author keywords

[No Author keywords available]

Indexed keywords

DEOXYRIBONUCLEASE; LIGAND; THYROID HORMONE; THYROID HORMONE RECEPTOR; LIOTHYRONINE;

EID: 84928788176     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms8048     Document Type: Article
Times cited : (101)

References (61)
  • 1
    • 77953639982 scopus 로고    scopus 로고
    • Molecular aspects of thyroid hormone actions
    • Cheng, S. Y., Leonard, J. L. & Davis, P. J. Molecular aspects of thyroid hormone actions. Endocr. Rev. 31, 139-170 (2010).
    • (2010) Endocr. Rev , vol.31 , pp. 139-170
    • Cheng, S.Y.1    Leonard, J.L.2    Davis, P.J.3
  • 2
    • 0035815621 scopus 로고    scopus 로고
    • Nuclear cytoplasmic shuttling by thyroid hormone receptors. Multiple protein interactions are required for nuclear retention
    • Baumann, C. T., Maruvada, P., Hager, G. L. & Yen, P. M. Nuclear cytoplasmic shuttling by thyroid hormone receptors. multiple protein interactions are required for nuclear retention. J. Biol. Chem. 276, 11237-11245 (2001).
    • (2001) J. Biol. Chem , vol.276 , pp. 11237-11245
    • Baumann, C.T.1    Maruvada, P.2    Hager, G.L.3    Yen, P.M.4
  • 3
    • 0028860925 scopus 로고
    • A role for nucleosome assembly in both silencing and activation of the Xenopus TR beta A gene by the thyroid hormone receptor
    • Wong, J., Shi, Y. B. & Wolffe, A. P. A role for nucleosome assembly in both silencing and activation of the Xenopus TR beta A gene by the thyroid hormone receptor. Genes Dev. 9, 2696-2711 (1995).
    • (1995) Genes Dev , vol.9 , pp. 2696-2711
    • Wong, J.1    Shi, Y.B.2    Wolffe, A.P.3
  • 4
    • 0029976309 scopus 로고    scopus 로고
    • Transcriptional silencing by unliganded thyroid hormone receptor beta requires a soluble corepressor that interacts with the ligand-binding domain of the receptor
    • Tong, G. X., Jeyakumar, M., Tanen, M. R. & Bagchi, M. K. Transcriptional silencing by unliganded thyroid hormone receptor beta requires a soluble corepressor that interacts with the ligand-binding domain of the receptor. Mol. Cell Biol. 16, 1909-1920 (1996).
    • (1996) Mol. Cell Biol , vol.16 , pp. 1909-1920
    • Tong, G.X.1    Jeyakumar, M.2    Tanen, M.R.3    Bagchi, M.K.4
  • 5
    • 0029794881 scopus 로고    scopus 로고
    • SMRT isoforms mediate repression and anti-repression of nuclear receptor heterodimers
    • Chen, J. D., Umesono, K. & Evans, R. M. SMRT isoforms mediate repression and anti-repression of nuclear receptor heterodimers. Proc. Natl Acad. Sci. USA 93, 7567-7571 (1996).
    • (1996) Proc. Natl Acad. Sci. USA , vol.93 , pp. 7567-7571
    • Chen, J.D.1    Umesono, K.2    Evans, R.M.3
  • 6
    • 0029132202 scopus 로고
    • Ligand-independent repression by the thyroid hormone receptor mediated by a nuclear receptor co-repressor
    • Horlein, A. J. et al. Ligand-independent repression by the thyroid hormone receptor mediated by a nuclear receptor co-repressor. Nature 377, 397-404 (1995).
    • (1995) Nature , vol.377 , pp. 397-404
    • Horlein, A.J.1
  • 7
    • 0030771328 scopus 로고    scopus 로고
    • A conformational switch in nuclear hormone receptors is involved in coupling hormone binding to corepressor release
    • Lin, B. C., Hong, S. H., Krig, S., Yoh, S. M. & Privalsky, M. L. A conformational switch in nuclear hormone receptors is involved in coupling hormone binding to corepressor release. Mol. Cell Biol. 17, 6131-6138 (1997).
    • (1997) Mol. Cell Biol , vol.17 , pp. 6131-6138
    • Lin, B.C.1    Hong, S.H.2    Krig, S.3    Yoh, S.M.4    Privalsky, M.L.5
  • 8
    • 0033572656 scopus 로고    scopus 로고
    • Molecular determinants of nuclear receptor-corepressor interaction
    • Perissi, V. et al. Molecular determinants of nuclear receptor-corepressor interaction. Genes Dev. 13, 3198-3208 (1999).
    • (1999) Genes Dev , vol.13 , pp. 3198-3208
    • Perissi, V.1
  • 9
    • 0030740253 scopus 로고    scopus 로고
    • Nuclear receptor coactivator ACTR is a novel histone acetyltransferase and forms a multimeric activation complex with P/CAF and CBP/p300
    • Chen, H. et al. Nuclear receptor coactivator ACTR is a novel histone acetyltransferase and forms a multimeric activation complex with P/CAF and CBP/p300. Cell 90, 569-580 (1997).
    • (1997) Cell , vol.90 , pp. 569-580
    • Chen, H.1
  • 10
    • 0029758906 scopus 로고    scopus 로고
    • Ligand induction of a transcriptionally active thyroid hormone receptor coactivator complex
    • Fondell, J. D., Ge, H. & Roeder, R. G. Ligand induction of a transcriptionally active thyroid hormone receptor coactivator complex. Proc. Natl Acad. Sci. USA 93, 8329-8333 (1996).
    • (1996) Proc. Natl Acad. Sci. USA , vol.93 , pp. 8329-8333
    • Fondell, J.D.1    Ge, H.2    Roeder, R.G.3
  • 11
    • 0033119162 scopus 로고    scopus 로고
    • Coactivator and corepressor complexes in nuclear receptor function
    • Xu, L., Glass, C. K. & Rosenfeld, M. G. Coactivator and corepressor complexes in nuclear receptor function. Curr. Opin. Genet. Dev. 9, 140-147 (1999).
    • (1999) Curr. Opin. Genet. Dev , vol.9 , pp. 140-147
    • Xu, L.1    Glass, C.K.2    Rosenfeld, M.G.3
  • 12
    • 84900404900 scopus 로고    scopus 로고
    • Thyroid hormone regulation of metabolism
    • Mullur, R., Liu, Y. Y. & Brent, G. A. Thyroid hormone regulation of metabolism. Physiol. Rev. 94, 355-382 (2014).
    • (2014) Physiol. Rev , vol.94 , pp. 355-382
    • Mullur, R.1    Liu, Y.Y.2    Brent, G.A.3
  • 13
    • 84865961223 scopus 로고    scopus 로고
    • Mechanisms of thyroid hormone action
    • Brent, G. A. Mechanisms of thyroid hormone action. J. Clin. Invest. 122, 3035-3043 (2012).
    • (2012) J. Clin. Invest , vol.122 , pp. 3035-3043
    • Brent, G.A.1
  • 14
    • 84877579234 scopus 로고    scopus 로고
    • The in vivo role of nuclear receptor corepressors in thyroid hormone action
    • 1830
    • Astapova, I. & Hollenberg, A. N. The in vivo role of nuclear receptor corepressors in thyroid hormone action. Biochim. Biophys. Acta 1830, 3876-3881 (2013).
    • (2013) Biochim. Biophys. Acta , pp. 3876-3881
    • Astapova, I.1    Hollenberg, A.N.2
  • 15
    • 75649135910 scopus 로고    scopus 로고
    • Deconstructing repression: Evolving models of co-repressor action
    • Perissi, V., Jepsen, K., Glass, C. K. & Rosenfeld, M. G. Deconstructing repression: evolving models of co-repressor action. Nat. Rev. Genet. 11, 109-123 (2010).
    • (2010) Nat. Rev. Genet , vol.11 , pp. 109-123
    • Perissi, V.1    Jepsen, K.2    Glass, C.K.3    Rosenfeld, M.G.4
  • 16
    • 84876912279 scopus 로고    scopus 로고
    • Emerging roles of the corepressors NCoR1 and SMRT in homeostasis
    • Mottis, A., Mouchiroud, L. & Auwerx, J. Emerging roles of the corepressors NCoR1 and SMRT in homeostasis. Genes Dev. 27, 819-835 (2013).
    • (2013) Genes Dev , vol.27 , pp. 819-835
    • Mottis, A.1    Mouchiroud, L.2    Auwerx, J.3
  • 17
    • 84878547373 scopus 로고    scopus 로고
    • C/EBP maintains chromatin accessibility in liver and facilitates glucocorticoid receptor recruitment to steroid response elements
    • Grontved, L. et al. C/EBP maintains chromatin accessibility in liver and facilitates glucocorticoid receptor recruitment to steroid response elements. EMBO J. 32, 1568-1583 (2013).
    • (2013) EMBO J. , vol.32 , pp. 1568-1583
    • Grontved, L.1
  • 18
    • 79952184341 scopus 로고    scopus 로고
    • Chromatin accessibility pre-determines glucocorticoid receptor binding patterns
    • John, S. et al. Chromatin accessibility pre-determines glucocorticoid receptor binding patterns. Nat. Genet. 43, 264-268 (2011).
    • (2011) Nat. Genet , vol.43 , pp. 264-268
    • John, S.1
  • 19
    • 84882600977 scopus 로고    scopus 로고
    • Reprogramming the chromatin landscape: Interplay of the estrogen and glucocorticoid receptors at the genomic level
    • Miranda, T. B. et al. Reprogramming the chromatin landscape: interplay of the estrogen and glucocorticoid receptors at the genomic level. Cancer Res. 73, 5130-5139 (2013).
    • (2013) Cancer Res , vol.73 , pp. 5130-5139
    • Miranda, T.B.1
  • 20
    • 84892800329 scopus 로고    scopus 로고
    • Dynamic regulation of transcriptional states by chromatin and transcription factors
    • Voss, T. C. & Hager, G. L. Dynamic regulation of transcriptional states by chromatin and transcription factors. Nat. Rev. Genet. 15, 69-81 (2014).
    • (2014) Nat. Rev. Genet , vol.15 , pp. 69-81
    • Voss, T.C.1    Hager, G.L.2
  • 21
    • 84862645458 scopus 로고    scopus 로고
    • Rapid genome-scale mapping of chromatin accessibility in tissue
    • Grontved, L. et al. Rapid genome-scale mapping of chromatin accessibility in tissue. Epigenetics Chromatin 5, 10 (2012).
    • (2012) Epigenetics Chromatin , vol.5 , pp. 10
    • Grontved, L.1
  • 22
    • 84892660787 scopus 로고    scopus 로고
    • Novel mechanism of positive versus negative regulation by thyroid hormone receptor beta1 (TRbeta1) identified by genome-wide profiling of binding sites in mouse liver
    • Ramadoss, P. et al. Novel mechanism of positive versus negative regulation by thyroid hormone receptor beta1 (TRbeta1) identified by genome-wide profiling of binding sites in mouse liver. J. Biol. Chem. 289, 1313-1328 (2014).
    • (2014) J. Biol. Chem , vol.289 , pp. 1313-1328
    • Ramadoss, P.1
  • 23
    • 84897585437 scopus 로고    scopus 로고
    • Genome-wide binding patterns of thyroid hormone receptor Beta
    • Ayers, S. et al. Genome-wide binding patterns of thyroid hormone receptor Beta. PLoS ONE 9, e81186 (2014).
    • (2014) PLoS ONE , vol.9 , pp. e81186
    • Ayers, S.1
  • 24
    • 84874247902 scopus 로고    scopus 로고
    • Genome-wide analysis of thyroid hormone receptors shared and specific functions in neural cells
    • Chatonnet, F., Guyot, R., Benoit, G. & Flamant, F. Genome-wide analysis of thyroid hormone receptors shared and specific functions in neural cells. Proc. Natl Acad. Sci. USA 110, E766-E775 (2013).
    • (2013) Proc. Natl Acad. Sci. USA , vol.110 , pp. E766-E775
    • Chatonnet, F.1    Guyot, R.2    Benoit, G.3    Flamant, F.4
  • 25
    • 84861889354 scopus 로고    scopus 로고
    • Differential DNase i hypersensitivity reveals factor-dependent chromatin dynamics
    • He, H. H. et al. Differential DNase I hypersensitivity reveals factor-dependent chromatin dynamics. Genome Res. 22, 1015-1025 (2012).
    • (2012) Genome Res , vol.22 , pp. 1015-1025
    • He, H.H.1
  • 26
    • 0026714849 scopus 로고
    • Heterodimerization among thyroid hormone receptor, retinoic acid receptor, retinoid X receptor, chicken ovalbumin upstream promoter transcription factor, and an endogenous liver protein
    • Berrodin, T. J., Marks, M. S., Ozato, K., Linney, E. & Lazar, M. A. Heterodimerization among thyroid hormone receptor, retinoic acid receptor, retinoid X receptor, chicken ovalbumin upstream promoter transcription factor, and an endogenous liver protein. Mol. Endocrinol. 6, 1468-1478 (1992).
    • (1992) Mol. Endocrinol , vol.6 , pp. 1468-1478
    • Berrodin, T.J.1    Marks, M.S.2    Ozato, K.3    Linney, E.4    Lazar, M.A.5
  • 27
    • 0030836744 scopus 로고    scopus 로고
    • Molecular basis of thyroid hormonedependent brain development
    • Oppenheimer, J. H. & Schwartz, H. L. Molecular basis of thyroid hormonedependent brain development. Endocr. Rev. 18, 462-475 (1997).
    • (1997) Endocr. Rev , vol.18 , pp. 462-475
    • Oppenheimer, J.H.1    Schwartz, H.L.2
  • 28
    • 0018715162 scopus 로고
    • Purification of the glucocorticoid receptor from rat liver cytosol
    • Wrange, O., Carlstedt-Duke, J. & Gustafsson, J. A. Purification of the glucocorticoid receptor from rat liver cytosol. J. Biol. Chem. 254, 9284-9290 (1979).
    • (1979) J. Biol. Chem , vol.254 , pp. 9284-9290
    • Wrange, O.1    Carlstedt-Duke, J.2    Gustafsson, J.A.3
  • 29
    • 10744226856 scopus 로고    scopus 로고
    • Effects of ligand and thyroid hormone receptor isoforms on hepatic gene expression profiles of thyroid hormone receptor knockout mice
    • Yen, P. M. et al. Effects of ligand and thyroid hormone receptor isoforms on hepatic gene expression profiles of thyroid hormone receptor knockout mice. EMBO Rep. 4, 581-587 (2003).
    • (2003) EMBO Rep , vol.4 , pp. 581-587
    • Yen, P.M.1
  • 30
    • 58049196754 scopus 로고    scopus 로고
    • The nuclear corepressor, NCoR, regulates thyroid hormone action in vivo
    • Astapova, I. et al. The nuclear corepressor, NCoR, regulates thyroid hormone action in vivo. Proc. Natl Acad. Sci. USA 105, 19544-19549 (2008).
    • (2008) Proc. Natl Acad. Sci. USA , vol.105 , pp. 19544-19549
    • Astapova, I.1
  • 31
    • 77954832705 scopus 로고    scopus 로고
    • The interaction between nuclear receptor corepressor and histone deacetylase 3 regulates both positive and negative thyroid hormone action in vivo
    • You, S. H., Liao, X., Weiss, R. E. & Lazar, M. A. The interaction between nuclear receptor corepressor and histone deacetylase 3 regulates both positive and negative thyroid hormone action in vivo. Mol. Endocrinol. 24, 1359-1367 (2010).
    • (2010) Mol. Endocrinol , vol.24 , pp. 1359-1367
    • You, S.H.1    Liao, X.2    Weiss, R.E.3    Lazar, M.A.4
  • 32
    • 84894613651 scopus 로고    scopus 로고
    • Refined DNase-seq protocol and data analysis reveals intrinsic bias in transcription factor footprint identification
    • He, H. H. et al. Refined DNase-seq protocol and data analysis reveals intrinsic bias in transcription factor footprint identification. Nat. Methods 11, 73-78 (2014).
    • (2014) Nat. Methods , vol.11 , pp. 73-78
    • He, H.H.1
  • 33
    • 84922589001 scopus 로고    scopus 로고
    • DNase footprint signatures are dictated by factor dynamics and DNA sequence
    • Sung, M. H., Guertin, M. J., Baek, S. & Hager, G. L. DNase footprint signatures are dictated by factor dynamics and DNA sequence. Mol. Cell 56, 275-285 (2014).
    • (2014) Mol. Cell , vol.56 , pp. 275-285
    • Sung, M.H.1    Guertin, M.J.2    Baek, S.3    Hager, G.L.4
  • 34
    • 84868325694 scopus 로고    scopus 로고
    • Cohesin regulates tissue-specific expression by stabilizing highly occupied cis-regulatory modules
    • Faure, A. J. et al. Cohesin regulates tissue-specific expression by stabilizing highly occupied cis-regulatory modules. Genome Res. 22, 2163-2175 (2012).
    • (2012) Genome Res , vol.22 , pp. 2163-2175
    • Faure, A.J.1
  • 35
    • 84902355423 scopus 로고    scopus 로고
    • Molecular architecture of transcription factor hotspots in early adipogenesis
    • Siersbaek, R. et al. Molecular architecture of transcription factor hotspots in early adipogenesis. Cell Rep. 7, 1434-1442 (2014).
    • (2014) Cell Rep , vol.7 , pp. 1434-1442
    • Siersbaek, R.1
  • 36
    • 79952267284 scopus 로고    scopus 로고
    • High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells
    • Boyle, A. P. et al. High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells. Genome Res. 21, 456-464 (2011).
    • (2011) Genome Res , vol.21 , pp. 456-464
    • Boyle, A.P.1
  • 37
    • 0020079551 scopus 로고
    • Thyroid hormone nuclear receptor. Evidence for multimeric organization in chromatin
    • Perlman, A. J., Stanley, F. & Samuels, H. H. Thyroid hormone nuclear receptor. Evidence for multimeric organization in chromatin. J. Biol. Chem. 257, 930-938 (1982).
    • (1982) J. Biol. Chem , vol.257 , pp. 930-938
    • Perlman, A.J.1    Stanley, F.2    Samuels, H.H.3
  • 38
    • 0019307418 scopus 로고
    • Thyroid hormone receptor-containing fragment released from chromatin by deoxyribonuclease i and micrococcal nuclease
    • Jump, D. B. & Oppenheimer, J. H. Thyroid hormone receptor-containing fragment released from chromatin by deoxyribonuclease I and micrococcal nuclease. Science 209, 811-813 (1980).
    • (1980) Science , vol.209 , pp. 811-813
    • Jump, D.B.1    Oppenheimer, J.H.2
  • 39
    • 32544439893 scopus 로고    scopus 로고
    • Thyroid hormone-regulated target genes have distinct patterns of coactivator recruitment and histone acetylation
    • Liu, Y., Xia, X., Fondell, J. D. & Yen, P. M. Thyroid hormone-regulated target genes have distinct patterns of coactivator recruitment and histone acetylation. Mol. Endocrinol. 20, 483-490 (2006).
    • (2006) Mol. Endocrinol , vol.20 , pp. 483-490
    • Liu, Y.1    Xia, X.2    Fondell, J.D.3    Yen, P.M.4
  • 40
    • 80052000538 scopus 로고    scopus 로고
    • Dynamic exchange at regulatory elements during chromatin remodelling underlies assisted loading mechanism
    • Voss, T. C. et al. Dynamic exchange at regulatory elements during chromatin remodelling underlies assisted loading mechanism. Cell 146, 544-554 (2011).
    • (2011) Cell , vol.146 , pp. 544-554
    • Voss, T.C.1
  • 41
    • 0037809279 scopus 로고    scopus 로고
    • Dynamic shuttling and intranuclear mobility of nuclear hormone receptors
    • Maruvada, P., Baumann, C. T., Hager, G. L. & Yen, P. M. Dynamic shuttling and intranuclear mobility of nuclear hormone receptors. J. Biol. Chem. 278, 12425-12432 (2003).
    • (2003) J. Biol. Chem , vol.278 , pp. 12425-12432
    • Maruvada, P.1    Baumann, C.T.2    Hager, G.L.3    Yen, P.M.4
  • 42
    • 84866848397 scopus 로고    scopus 로고
    • Chromatin accessibility reveals insights into androgen receptor activation and transcriptional specificity
    • Tewari, A. K. et al. Chromatin accessibility reveals insights into androgen receptor activation and transcriptional specificity. Genome Biol. 13, R88 (2012).
    • (2012) Genome Biol , vol.13 , pp. R88
    • Tewari, A.K.1
  • 43
    • 84872269321 scopus 로고    scopus 로고
    • Nucleosome-driven transcription factor binding and gene regulation
    • Ballare, C. et al. Nucleosome-driven transcription factor binding and gene regulation. Mol. Cell 49, 67-79 (2013).
    • (2013) Mol. Cell , vol.49 , pp. 67-79
    • Ballare, C.1
  • 44
    • 0028234512 scopus 로고
    • 3, 5, 3'-L-triiodothyronine (thyroid hormone)- induced protein-DNA interactions in the thyroid hormone response elements and cell type-specific elements of the rat growth hormone gene revealed by in vivo dimethyl sulfate footprinting
    • Force, W. R. & Spindler, S. R. 3, 5, 3'-L-triiodothyronine (thyroid hormone)- induced protein-DNA interactions in the thyroid hormone response elements and cell type-specific elements of the rat growth hormone gene revealed by in vivo dimethyl sulfate footprinting. J. Biol. Chem. 269, 9682-9686 (1994).
    • (1994) J. Biol. Chem , vol.269 , pp. 9682-9686
    • Force, W.R.1    Spindler, S.R.2
  • 45
    • 0029994492 scopus 로고    scopus 로고
    • In vivo genomic footprinting of thyroid hormone-responsive genes in pituitary tumor cell lines
    • Kim, S. W., Ahn, I. M. & Larsen, P. R. In vivo genomic footprinting of thyroid hormone-responsive genes in pituitary tumor cell lines. Mol. Cell Biol. 16, 4465-4477 (1996).
    • (1996) Mol. Cell Biol , vol.16 , pp. 4465-4477
    • Kim, S.W.1    Ahn, I.M.2    Larsen, P.R.3
  • 46
    • 32544439491 scopus 로고    scopus 로고
    • Intracellular localization and nucleocytoplasmic trafficking of steroid receptors: An overview
    • Kumar, S., Saradhi, M., Chaturvedi, N. K. & Tyagi, R. K. Intracellular localization and nucleocytoplasmic trafficking of steroid receptors: an overview. Mol. Cell Endocrinol. 246, 147-156 (2006).
    • (2006) Mol. Cell Endocrinol , vol.246 , pp. 147-156
    • Kumar, S.1    Saradhi, M.2    Chaturvedi, N.K.3    Tyagi, R.K.4
  • 47
    • 84885376679 scopus 로고    scopus 로고
    • Distinct properties of cell-type-specific and shared transcription factor binding sites
    • Gertz, J. et al. Distinct properties of cell-type-specific and shared transcription factor binding sites. Mol. Cell 52, 25-36 (2013).
    • (2013) Mol. Cell , vol.52 , pp. 25-36
    • Gertz, J.1
  • 48
    • 84897883825 scopus 로고    scopus 로고
    • Tissue-specific pioneer factors associate with androgen receptor cistromes and transcription programs
    • Pihlajamaa, P. et al. Tissue-specific pioneer factors associate with androgen receptor cistromes and transcription programs. EMBO J. 33, 312-326 (2014).
    • (2014) EMBO J. , vol.33 , pp. 312-326
    • Pihlajamaa, P.1
  • 49
    • 79959911826 scopus 로고    scopus 로고
    • Transcription factor AP1 potentiates chromatin accessibility and glucocorticoid receptor binding
    • Biddie, S. C. et al. Transcription factor AP1 potentiates chromatin accessibility and glucocorticoid receptor binding. Mol. Cell 43, 145-155 (2011).
    • (2011) Mol. Cell , vol.43 , pp. 145-155
    • Biddie, S.C.1
  • 50
    • 84896392369 scopus 로고    scopus 로고
    • The transcription factor titration effect dictates level of gene expression
    • Brewster, R. C. et al. The transcription factor titration effect dictates level of gene expression. Cell 156, 1312-1323 (2014).
    • (2014) Cell , vol.156 , pp. 1312-1323
    • Brewster, R.C.1
  • 51
    • 84866409544 scopus 로고    scopus 로고
    • The hypersensitive glucocorticoid response specifically regulates period 1 and expression of circadian genes
    • Reddy, T. E., Gertz, J., Crawford, G. E., Garabedian, M. J. & Myers, R. M. The hypersensitive glucocorticoid response specifically regulates period 1 and expression of circadian genes. Mol. Cell Biol. 32, 3756-3767 (2012).
    • (2012) Mol. Cell Biol , vol.32 , pp. 3756-3767
    • Reddy, T.E.1    Gertz, J.2    Crawford, G.E.3    Garabedian, M.J.4    Myers, R.M.5
  • 52
    • 78651250284 scopus 로고    scopus 로고
    • FOXA1 is a key determinant of estrogen receptor function and endocrine response
    • Hurtado, A., Holmes, K. A., Ross-Innes, C. S., Schmidt, D. & Carroll, J. S. FOXA1 is a key determinant of estrogen receptor function and endocrine response. Nat. Genet. 43, 27-33 (2011).
    • (2011) Nat. Genet , vol.43 , pp. 27-33
    • Hurtado, A.1    Holmes, K.A.2    Ross-Innes, C.S.3    Schmidt, D.4    Carroll, J.S.5
  • 53
    • 46249088370 scopus 로고    scopus 로고
    • Lumi: A pipeline for processing Illumina microarray
    • Du, P., Kibbe, W. A. & Lin, S. M. lumi: a pipeline for processing Illumina microarray. Bioinformatics 24, 1547-1548 (2008).
    • (2008) Bioinformatics , vol.24 , pp. 1547-1548
    • Du, P.1    Kibbe, W.A.2    Lin, S.M.3
  • 54
    • 18744369640 scopus 로고    scopus 로고
    • Use of within-array replicate spots for assessing differential expression in microarray experiments
    • Smyth, G. K., Michaud, J. & Scott, H. S. Use of within-array replicate spots for assessing differential expression in microarray experiments. Bioinformatics 21, 2067-2075 (2005).
    • (2005) Bioinformatics , vol.21 , pp. 2067-2075
    • Smyth, G.K.1    Michaud, J.2    Scott, H.S.3
  • 55
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows- Wheeler transform
    • Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows- Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 56
    • 68549104404 scopus 로고    scopus 로고
    • The sequence alignment/map format and SAMtools
    • Li, H. et al. The sequence alignment/map format and SAMtools. Bioinformatics 25, 2078-2079 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1
  • 57
    • 84855878190 scopus 로고    scopus 로고
    • Quantitative analysis of genome-wide chromatin remodelling
    • Baek, S., Sung, M. H. & Hager, G. L. Quantitative analysis of genome-wide chromatin remodelling. Methods Mol. Biol. 833, 433-441 (2012).
    • (2012) Methods Mol. Biol , vol.833 , pp. 433-441
    • Baek, S.1    Sung, M.H.2    Hager, G.L.3
  • 58
    • 77958471357 scopus 로고    scopus 로고
    • Differential expression analysis for sequence count data
    • Anders, S. & Huber, W. Differential expression analysis for sequence count data. Genome Biol. 11, R106 (2010).
    • (2010) Genome Biol , vol.11 , pp. R106
    • Anders, S.1    Huber, W.2
  • 59
    • 77952567987 scopus 로고    scopus 로고
    • Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
    • Heinz, S. et al. Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol. Cell 38, 576-589 (2010).
    • (2010) Mol. Cell , vol.38 , pp. 576-589
    • Heinz, S.1
  • 60
    • 0037311919 scopus 로고    scopus 로고
    • TM4: A free, open-source system for microarray data management and analysis
    • Saeed, A. I. et al. TM4: a free, open-source system for microarray data management and analysis. Biotechniques 34, 374-378 (2003).
    • (2003) Biotechniques , vol.34 , pp. 374-378
    • Saeed, A.I.1
  • 61
    • 84876245094 scopus 로고    scopus 로고
    • Probing DNA shape and methylation state on a genomic scale with DNase i
    • Lazarovici, A. et al. Probing DNA shape and methylation state on a genomic scale with DNase I. Proc. Natl Acad. Sci. USA 110, 6376-6381 (2013).
    • (2013) Proc. Natl Acad. Sci. USA , vol.110 , pp. 6376-6381
    • Lazarovici, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.