-
1
-
-
84943182461
-
An integrated map of structural variation in 2,504 human genomes
-
Sudmant PH, Rausch T, Gardner EJ, Handsaker RE, Abyzov A, Huddleston J, et al. An integrated map of structural variation in 2,504 human genomes. Nature. 2015;526:75-81.
-
(2015)
Nature
, vol.526
, pp. 75-81
-
-
Sudmant, P.H.1
Rausch, T.2
Gardner, E.J.3
Handsaker, R.E.4
Abyzov, A.5
Huddleston, J.6
-
3
-
-
79954672317
-
Genome structural variation discovery and genotyping
-
Alkan C, Coe BP, Eichler EE. Genome structural variation discovery and genotyping. Nat Rev Genet. 2011;12:363-76.
-
(2011)
Nat Rev Genet
, vol.12
, pp. 363-376
-
-
Alkan, C.1
Coe, B.P.2
Eichler, E.E.3
-
4
-
-
84937522527
-
Paired-duplication signatures mark cryptic inversions and other complex structural variation
-
Brand H, Collins RL, Hanscom C, Rosenfeld JA, Pillalamarri V, Stone MR, et al. Paired-duplication signatures mark cryptic inversions and other complex structural variation. Am J Hum Genet. 2015;97:170-6.
-
(2015)
Am J Hum Genet
, vol.97
, pp. 170-176
-
-
Brand, H.1
Collins, R.L.2
Hanscom, C.3
Rosenfeld, J.A.4
Pillalamarri, V.5
Stone, M.R.6
-
5
-
-
84921718161
-
Cryptic and complex chromosomal aberrations in early-onset neuropsychiatric disorders
-
Brand H, Pillalamarri V, Collins RL, Eggert S, O'Dushlaine C, Braaten EB, et al. Cryptic and complex chromosomal aberrations in early-onset neuropsychiatric disorders. Am J Hum Genet. 2014;95:454-61.
-
(2014)
Am J Hum Genet
, vol.95
, pp. 454-461
-
-
Brand, H.1
Pillalamarri, V.2
Collins, R.L.3
Eggert, S.4
O'Dushlaine, C.5
Braaten, E.B.6
-
6
-
-
80055003130
-
Inverted genomic segments and complex triplication rearrangements are mediated by inverted repeats in the human genome
-
Carvalho CM, Ramocki MB, Pehlivan D, Franco LM, Gonzaga-Jauregui C, Fang P, et al. Inverted genomic segments and complex triplication rearrangements are mediated by inverted repeats in the human genome. Nat Genet. 2011;43:1074-81.
-
(2011)
Nat Genet
, vol.43
, pp. 1074-1081
-
-
Carvalho, C.M.1
Ramocki, M.B.2
Pehlivan, D.3
Franco, L.M.4
Gonzaga-Jauregui, C.5
Fang, P.6
-
7
-
-
84925497196
-
Resolving the complexity of the human genome using single-molecule sequencing
-
Chaisson MJ, Huddleston J, Dennis MY, Sudmant PH, Malig M, Hormozdiari F, et al. Resolving the complexity of the human genome using single-molecule sequencing. Nature. 2015;517:608-11.
-
(2015)
Nature
, vol.517
, pp. 608-611
-
-
Chaisson, M.J.1
Huddleston, J.2
Dennis, M.Y.3
Sudmant, P.H.4
Malig, M.5
Hormozdiari, F.6
-
8
-
-
84926350985
-
Complex nature of apparently balanced chromosomal rearrangements in patients with autism spectrum disorder
-
Tabet AC, Verloes A, Pilorge M, Delaby E, Delorme R, Nygren G, et al. Complex nature of apparently balanced chromosomal rearrangements in patients with autism spectrum disorder. Mol Autism. 2015;6:19.
-
(2015)
Mol Autism
, vol.6
, pp. 19
-
-
Tabet, A.C.1
Verloes, A.2
Pilorge, M.3
Delaby, E.4
Delorme, R.5
Nygren, G.6
-
9
-
-
84995436852
-
The genomic landscape of balanced cytogenetic abnormalities associated with human congenital anomalies
-
Redin C, Brand H, Collins RL, Kammin T, Mitchell E, Hodge JC, et al. The genomic landscape of balanced cytogenetic abnormalities associated with human congenital anomalies. Nat Genet. 2017;49:36-45.
-
(2017)
Nat Genet
, vol.49
, pp. 36-45
-
-
Redin, C.1
Brand, H.2
Collins, R.L.3
Kammin, T.4
Mitchell, E.5
Hodge, J.C.6
-
10
-
-
84862777955
-
Complex reorganization and predominant non-homologous repair following chromosomal breakage in karyotypically balanced germline rearrangements and transgenic integration
-
Chiang C, Jacobsen JC, Ernst C, Hanscom C, Heilbut A, Blumenthal I, et al. Complex reorganization and predominant non-homologous repair following chromosomal breakage in karyotypically balanced germline rearrangements and transgenic integration. Nat Genet. 2012;44:390-7. s391.
-
(2012)
Nat Genet
, vol.44
, pp. 390-397
-
-
Chiang, C.1
Jacobsen, J.C.2
Ernst, C.3
Hanscom, C.4
Heilbut, A.5
Blumenthal, I.6
-
11
-
-
84869173265
-
Chromoanagenesis and cancer: mechanisms and consequences of localized, complex chromosomal rearrangements
-
Holland AJ, Cleveland DW. Chromoanagenesis and cancer: mechanisms and consequences of localized, complex chromosomal rearrangements. Nat Med. 2012;18:1630-8.
-
(2012)
Nat Med
, vol.18
, pp. 1630-1638
-
-
Holland, A.J.1
Cleveland, D.W.2
-
12
-
-
78650959663
-
Massive genomic rearrangement acquired in a single catastrophic event during cancer development
-
Stephens PJ, Greenman CD, Fu B, Yang F, Bignell GR, Mudie LJ, et al. Massive genomic rearrangement acquired in a single catastrophic event during cancer development. Cell. 2011;144:27-40.
-
(2011)
Cell
, vol.144
, pp. 27-40
-
-
Stephens, P.J.1
Greenman, C.D.2
Fu, B.3
Yang, F.4
Bignell, G.R.5
Mudie, L.J.6
-
13
-
-
80052916562
-
Chromosome catastrophes involve replication mechanisms generating complex genomic rearrangements
-
Liu P, Erez A, Nagamani SC, Dhar SU, Kolodziejska KE, Dharmadhikari AV, et al. Chromosome catastrophes involve replication mechanisms generating complex genomic rearrangements. Cell. 2011;146:889-903.
-
(2011)
Cell
, vol.146
, pp. 889-903
-
-
Liu, P.1
Erez, A.2
Nagamani, S.C.3
Dhar, S.U.4
Kolodziejska, K.E.5
Dharmadhikari, A.V.6
-
14
-
-
84875757638
-
Punctuated evolution of prostate cancer genomes
-
Baca SC, Prandi D, Lawrence MS, Mosquera JM, Romanel A, Drier Y, et al. Punctuated evolution of prostate cancer genomes. Cell. 2013;153:666-77.
-
(2013)
Cell
, vol.153
, pp. 666-677
-
-
Baca, S.C.1
Prandi, D.2
Lawrence, M.S.3
Mosquera, J.M.4
Romanel, A.5
Drier, Y.6
-
15
-
-
80054698731
-
Chromothripsis is a common mechanism driving genomic rearrangements in primary and metastatic colorectal cancer
-
Kloosterman WP, Hoogstraat M, Paling O, Tavakoli-Yaraki M, Renkens I, Vermaat JS, et al. Chromothripsis is a common mechanism driving genomic rearrangements in primary and metastatic colorectal cancer. Genome Biol. 2011;12:R103.
-
(2011)
Genome Biol
, vol.12
-
-
Kloosterman, W.P.1
Hoogstraat, M.2
Paling, O.3
Tavakoli-Yaraki, M.4
Renkens, I.5
Vermaat, J.S.6
-
16
-
-
84862907577
-
Genome sequencing of pediatric medulloblastoma links catastrophic DNA rearrangements with TP53 mutations
-
Rausch T, Jones DT, Zapatka M, Stutz AM, Zichner T, Weischenfeldt J, et al. Genome sequencing of pediatric medulloblastoma links catastrophic DNA rearrangements with TP53 mutations. Cell. 2012;148:59-71.
-
(2012)
Cell
, vol.148
, pp. 59-71
-
-
Rausch, T.1
Jones, D.T.2
Zapatka, M.3
Stutz, A.M.4
Zichner, T.5
Weischenfeldt, J.6
-
17
-
-
79955416773
-
Chromothripsis as a mechanism driving complex de novo structural rearrangements in the germline
-
Kloosterman WP, Guryev V, van Roosmalen M, Duran KJ, de Bruijn E, Bakker SC, et al. Chromothripsis as a mechanism driving complex de novo structural rearrangements in the germline. Hum Mol Genet. 2011;20:1916-24.
-
(2011)
Hum Mol Genet
, vol.20
, pp. 1916-1924
-
-
Kloosterman, W.P.1
Guryev, V.2
Roosmalen, M.3
Duran, K.J.4
Bruijn, E.5
Bakker, S.C.6
-
18
-
-
84863105790
-
Constitutional chromothripsis rearrangements involve clustered double-stranded DNA breaks and nonhomologous repair mechanisms
-
Kloosterman WP, Tavakoli-Yaraki M, van Roosmalen MJ, van Binsbergen E, Renkens I, Duran K, et al. Constitutional chromothripsis rearrangements involve clustered double-stranded DNA breaks and nonhomologous repair mechanisms. Cell Rep. 2012;1:648-55.
-
(2012)
Cell Rep
, vol.1
, pp. 648-655
-
-
Kloosterman, W.P.1
Tavakoli-Yaraki, M.2
Roosmalen, M.J.3
Binsbergen, E.4
Renkens, I.5
Duran, K.6
-
19
-
-
84908211410
-
Constitutional chromoanasynthesis: description of a rare chromosomal event in a patient
-
Plaisancie J, Kleinfinger P, Cances C, Bazin A, Julia S, Trost D, et al. Constitutional chromoanasynthesis: description of a rare chromosomal event in a patient. Eur J Med Genet. 2014;57:567-70.
-
(2014)
Eur J Med Genet
, vol.57
, pp. 567-570
-
-
Plaisancie, J.1
Kleinfinger, P.2
Cances, C.3
Bazin, A.4
Julia, S.5
Trost, D.6
-
20
-
-
84919723909
-
Complex structural rearrangement features suggesting chromoanagenesis mechanism in a case of 1p36 deletion syndrome
-
Zanardo EA, Piazzon FB, Dutra RL, Dias AT, Montenegro MM, Novo-Filho GM, et al. Complex structural rearrangement features suggesting chromoanagenesis mechanism in a case of 1p36 deletion syndrome. Mol Genet Genomics. 2014;289:1037-43.
-
(2014)
Mol Genet Genomics
, vol.289
, pp. 1037-1043
-
-
Zanardo, E.A.1
Piazzon, F.B.2
Dutra, R.L.3
Dias, A.T.4
Montenegro, M.M.5
Novo-Filho, G.M.6
-
21
-
-
84974686950
-
A distinct class of chromoanagenesis events characterized by focal copy number gains
-
Masset H, Hestand MS, Van Esch H, Kleinfinger P, Plaisancie J, Afenjar A, et al. A distinct class of chromoanagenesis events characterized by focal copy number gains. Hum Mutat. 2016;37:661-8.
-
(2016)
Hum Mutat
, vol.37
, pp. 661-668
-
-
Masset, H.1
Hestand, M.S.2
Esch, H.3
Kleinfinger, P.4
Plaisancie, J.5
Afenjar, A.6
-
22
-
-
84924240766
-
Prenatal diagnosis of chromothripsis, with nine breaks characterized by karyotyping, FISH, microarray and whole-genome sequencing
-
Macera MJ, Sobrino A, Levy B, Jobanputra V, Aggarwal V, Mills A, et al. Prenatal diagnosis of chromothripsis, with nine breaks characterized by karyotyping, FISH, microarray and whole-genome sequencing. Prenat Diagn. 2015;35:299-301.
-
(2015)
Prenat Diagn
, vol.35
, pp. 299-301
-
-
Macera, M.J.1
Sobrino, A.2
Levy, B.3
Jobanputra, V.4
Aggarwal, V.5
Mills, A.6
-
23
-
-
84937040216
-
Unbalanced translocations arise from diverse mutational mechanisms including chromothripsis
-
Weckselblatt B, Hermetz KE, Rudd MK. Unbalanced translocations arise from diverse mutational mechanisms including chromothripsis. Genome Res. 2015;25:937-47.
-
(2015)
Genome Res
, vol.25
, pp. 937-947
-
-
Weckselblatt, B.1
Hermetz, K.E.2
Rudd, M.K.3
-
24
-
-
84990859114
-
A high-quality human reference panel reveals the complexity and distribution of genomic structural variants
-
Hehir-Kwa JY, Marschall T, Kloosterman WP, Francioli LC, Baaijens JA, Dijkstra LJ, et al. A high-quality human reference panel reveals the complexity and distribution of genomic structural variants. Nat Commun. 2016;7:12989.
-
(2016)
Nat Commun
, vol.7
, pp. 12989
-
-
Hehir-Kwa, J.Y.1
Marschall, T.2
Kloosterman, W.P.3
Francioli, L.C.4
Baaijens, J.A.5
Dijkstra, L.J.6
-
25
-
-
84957799431
-
Whole-genome sequencing reveals diverse models of structural variations in esophageal squamous cell carcinoma
-
Cheng C, Zhou Y, Li H, Xiong T, Li S, Bi Y, et al. Whole-genome sequencing reveals diverse models of structural variations in esophageal squamous cell carcinoma. Am J Hum Genet. 2016;98:256-74.
-
(2016)
Am J Hum Genet
, vol.98
, pp. 256-274
-
-
Cheng, C.1
Zhou, Y.2
Li, H.3
Xiong, T.4
Li, S.5
Bi, Y.6
-
26
-
-
84936754552
-
Comprehensive characterization of complex structural variations in cancer by directly comparing genome sequence reads
-
Moncunill V, Gonzalez S, Bea S, Andrieux LO, Salaverria I, Royo C, et al. Comprehensive characterization of complex structural variations in cancer by directly comparing genome sequence reads. Nat Biotechnol. 2014;32:1106-12.
-
(2014)
Nat Biotechnol
, vol.32
, pp. 1106-1112
-
-
Moncunill, V.1
Gonzalez, S.2
Bea, S.3
Andrieux, L.O.4
Salaverria, I.5
Royo, C.6
-
27
-
-
84877722178
-
Diverse mechanisms of somatic structural variations in human cancer genomes
-
Yang L, Luquette LJ, Gehlenborg N, Xi R, Haseley PS, Hsieh CH, et al. Diverse mechanisms of somatic structural variations in human cancer genomes. Cell. 2013;153:919-29.
-
(2013)
Cell
, vol.153
, pp. 919-929
-
-
Yang, L.1
Luquette, L.J.2
Gehlenborg, N.3
Xi, R.4
Haseley, P.S.5
Hsieh, C.H.6
-
28
-
-
40749089626
-
Structural variation of chromosomes in autism spectrum disorder
-
Marshall CR, Noor A, Vincent JB, Lionel AC, Feuk L, Skaug J, et al. Structural variation of chromosomes in autism spectrum disorder. Am J Hum Genet. 2008;82:477-88.
-
(2008)
Am J Hum Genet
, vol.82
, pp. 477-488
-
-
Marshall, C.R.1
Noor, A.2
Vincent, J.B.3
Lionel, A.C.4
Feuk, L.5
Skaug, J.6
-
29
-
-
84870549609
-
Chromosomal microarray versus karyotyping for prenatal diagnosis
-
Wapner RJ, Martin CL, Levy B, Ballif BC, Eng CM, Zachary JM, et al. Chromosomal microarray versus karyotyping for prenatal diagnosis. N Engl J Med. 2012;367:2175-84.
-
(2012)
N Engl J Med
, vol.367
, pp. 2175-2184
-
-
Wapner, R.J.1
Martin, C.L.2
Levy, B.3
Ballif, B.C.4
Eng, C.M.5
Zachary, J.M.6
-
30
-
-
0025941775
-
De novo balanced chromosome rearrangements and extra marker chromosomes identified at prenatal diagnosis: clinical significance and distribution of breakpoints
-
Warburton D. De novo balanced chromosome rearrangements and extra marker chromosomes identified at prenatal diagnosis: clinical significance and distribution of breakpoints. Am J Hum Genet. 1991;49:995-1013.
-
(1991)
Am J Hum Genet
, vol.49
, pp. 995-1013
-
-
Warburton, D.1
-
31
-
-
84922012902
-
Refining analyses of copy number variation identifies specific genes associated with developmental delay
-
Coe BP, Witherspoon K, Rosenfeld JA, van Bon BW, Vulto-van Silfhout AT, Bosco P, et al. Refining analyses of copy number variation identifies specific genes associated with developmental delay. Nat Genet. 2014;46:1063-71.
-
(2014)
Nat Genet
, vol.46
, pp. 1063-1071
-
-
Coe, B.P.1
Witherspoon, K.2
Rosenfeld, J.A.3
Bon, B.W.4
Vulto-van Silfhout, A.T.5
Bosco, P.6
-
32
-
-
67349182343
-
Autism genome-wide copy number variation reveals ubiquitin and neuronal genes
-
Glessner JT, Wang K, Cai G, Korvatska O, Kim CE, Wood S, et al. Autism genome-wide copy number variation reveals ubiquitin and neuronal genes. Nature. 2009;459:569-73.
-
(2009)
Nature
, vol.459
, pp. 569-573
-
-
Glessner, J.T.1
Wang, K.2
Cai, G.3
Korvatska, O.4
Kim, C.E.5
Wood, S.6
-
33
-
-
80051709029
-
Rare copy number variation discovery and cross-disorder comparisons identify risk genes for ADHD
-
Lionel AC, Crosbie J, Barbosa N, Goodale T, Thiruvahindrapuram B, Rickaby J, et al. Rare copy number variation discovery and cross-disorder comparisons identify risk genes for ADHD. Sci Transl Med. 2011;3:95ra75.
-
(2011)
Sci Transl Med
, vol.3
-
-
Lionel, A.C.1
Crosbie, J.2
Barbosa, N.3
Goodale, T.4
Thiruvahindrapuram, B.5
Rickaby, J.6
-
34
-
-
80053903662
-
Copy number variants of schizophrenia susceptibility loci are associated with a spectrum of speech and developmental delays and behavior problems
-
Sahoo T, Theisen A, Rosenfeld JA, Lamb AN, Ravnan JB, Schultz RA, et al. Copy number variants of schizophrenia susceptibility loci are associated with a spectrum of speech and developmental delays and behavior problems. Genet Med. 2011;13:868-80.
-
(2011)
Genet Med
, vol.13
, pp. 868-880
-
-
Sahoo, T.1
Theisen, A.2
Rosenfeld, J.A.3
Lamb, A.N.4
Ravnan, J.B.5
Schultz, R.A.6
-
35
-
-
84904465224
-
Genome sequencing identifies major causes of severe intellectual disability
-
Gilissen C, Hehir-Kwa JY, Thung DT, van de Vorst M, van Bon BW, Willemsen MH, et al. Genome sequencing identifies major causes of severe intellectual disability. Nature. 2014;511:344-7.
-
(2014)
Nature
, vol.511
, pp. 344-347
-
-
Gilissen, C.1
Hehir-Kwa, J.Y.2
Thung, D.T.3
Vorst, M.4
Bon, B.W.5
Willemsen, M.H.6
-
36
-
-
84942113437
-
Insights into autism spectrum disorder genomic architecture and biology from 71 risk loci
-
Sanders SJ, He X, Willsey AJ, Ercan-Sencicek AG, Samocha KE, Cicek AE, et al. Insights into autism spectrum disorder genomic architecture and biology from 71 risk loci. Neuron. 2015;87:1215-33.
-
(2015)
Neuron
, vol.87
, pp. 1215-1233
-
-
Sanders, S.J.1
He, X.2
Willsey, A.J.3
Ercan-Sencicek, A.G.4
Samocha, K.E.5
Cicek, A.E.6
-
37
-
-
84870568851
-
Clinical diagnosis by whole-genome sequencing of a prenatal sample
-
Talkowski ME, Ordulu Z, Pillalamarri V, Benson CB, Blumenthal I, Connolly S, et al. Clinical diagnosis by whole-genome sequencing of a prenatal sample. N Engl J Med. 2012;367:2226-32.
-
(2012)
N Engl J Med
, vol.367
, pp. 2226-2232
-
-
Talkowski, M.E.1
Ordulu, Z.2
Pillalamarri, V.3
Benson, C.B.4
Blumenthal, I.5
Connolly, S.6
-
38
-
-
84860347597
-
Sequencing chromosomal abnormalities reveals neurodevelopmental loci that confer risk across diagnostic boundaries
-
Talkowski ME, Rosenfeld JA, Blumenthal I, Pillalamarri V, Chiang C, Heilbut A, et al. Sequencing chromosomal abnormalities reveals neurodevelopmental loci that confer risk across diagnostic boundaries. Cell. 2012;149:525-37.
-
(2012)
Cell
, vol.149
, pp. 525-537
-
-
Talkowski, M.E.1
Rosenfeld, J.A.2
Blumenthal, I.3
Pillalamarri, V.4
Chiang, C.5
Heilbut, A.6
-
39
-
-
66149120624
-
Complex rearrangements in patients with duplications of MECP2 can occur by fork stalling and template switching
-
Carvalho CM, Zhang F, Liu P, Patel A, Sahoo T, Bacino CA, et al. Complex rearrangements in patients with duplications of MECP2 can occur by fork stalling and template switching. Hum Mol Genet. 2009;18:2188-203.
-
(2009)
Hum Mol Genet
, vol.18
, pp. 2188-2203
-
-
Carvalho, C.M.1
Zhang, F.2
Liu, P.3
Patel, A.4
Sahoo, T.5
Bacino, C.A.6
-
40
-
-
84958074030
-
Schizophrenia risk from complex variation of complement component 4
-
Sekar A, Bialas AR, de Rivera H, Davis A, Hammond TR, Kamitaki N, et al. Schizophrenia risk from complex variation of complement component 4. Nature. 2016;530:177-83.
-
(2016)
Nature
, vol.530
, pp. 177-183
-
-
Sekar, A.1
Bialas, A.R.2
Rivera, H.3
Davis, A.4
Hammond, T.R.5
Kamitaki, N.6
-
41
-
-
84959113449
-
Recurring exon deletions in the HP (haptoglobin) gene contribute to lower blood cholesterol levels
-
Boettger LM, Salem RM, Handsaker RE, Peloso GM, Kathiresan S, Hirschhorn JN, et al. Recurring exon deletions in the HP (haptoglobin) gene contribute to lower blood cholesterol levels. Nat Genet. 2016;48:359-66.
-
(2016)
Nat Genet
, vol.48
, pp. 359-366
-
-
Boettger, L.M.1
Salem, R.M.2
Handsaker, R.E.3
Peloso, G.M.4
Kathiresan, S.5
Hirschhorn, J.N.6
-
42
-
-
84905686674
-
Design of large-insert jumping libraries for structural variant detection using illumina sequencing
-
Hanscom C, Talkowski M. Design of large-insert jumping libraries for structural variant detection using illumina sequencing. Curr Protoc Hum Genet. 2014;80:7 22 21-29.
-
(2014)
Curr Protoc Hum Genet
, vol.80
, pp. 7 22 21-29
-
-
Hanscom, C.1
Talkowski, M.2
-
43
-
-
79953724351
-
Next-generation sequencing strategies enable routine detection of balanced chromosome rearrangements for clinical diagnostics and genetic research
-
Talkowski ME, Ernst C, Heilbut A, Chiang C, Hanscom C, Lindgren A, et al. Next-generation sequencing strategies enable routine detection of balanced chromosome rearrangements for clinical diagnostics and genetic research. Am J Hum Genet. 2011;88:469-81.
-
(2011)
Am J Hum Genet
, vol.88
, pp. 469-481
-
-
Talkowski, M.E.1
Ernst, C.2
Heilbut, A.3
Chiang, C.4
Hanscom, C.5
Lindgren, A.6
-
44
-
-
77957927440
-
The Simons Simplex Collection: a resource for identification of autism genetic risk factors
-
Fischbach GD, Lord C. The Simons Simplex Collection: a resource for identification of autism genetic risk factors. Neuron. 2010;68:192-5.
-
(2010)
Neuron
, vol.68
, pp. 192-195
-
-
Fischbach, G.D.1
Lord, C.2
-
45
-
-
84964694176
-
Mobster: accurate detection of mobile element insertions in next generation sequencing data
-
Thung DT, de Ligt J, Vissers LE, Steehouwer M, Kroon M, de Vries P, et al. Mobster: accurate detection of mobile element insertions in next generation sequencing data. Genome Biol. 2014;15:488.
-
(2014)
Genome Biol
, vol.15
, pp. 488
-
-
Thung, D.T.1
Ligt, J.2
Vissers, L.E.3
Steehouwer, M.4
Kroon, M.5
Vries, P.6
-
46
-
-
84938423867
-
Assembly and diploid architecture of an individual human genome via single-molecule technologies
-
Pendleton M, Sebra R, Pang AW, Ummat A, Franzen O, Rausch T, et al. Assembly and diploid architecture of an individual human genome via single-molecule technologies. Nat Methods. 2015;12:780-6.
-
(2015)
Nat Methods
, vol.12
, pp. 780-786
-
-
Pendleton, M.1
Sebra, R.2
Pang, A.W.3
Ummat, A.4
Franzen, O.5
Rausch, T.6
-
47
-
-
84924074442
-
Large multiallelic copy number variations in humans
-
Handsaker RE, Van Doren V, Berman JR, Genovese G, Kashin S, Boettger LM, et al. Large multiallelic copy number variations in humans. Nat Genet. 2015;47:296-303.
-
(2015)
Nat Genet
, vol.47
, pp. 296-303
-
-
Handsaker, R.E.1
Doren, V.2
Berman, J.R.3
Genovese, G.4
Kashin, S.5
Boettger, L.M.6
-
48
-
-
84905579746
-
Whole-genome sequence variation, population structure and demographic history of the Dutch population
-
Francioli LC, Menelaou A, Pulit SL, Dijk F, Palamara PF, Elbers CC, et al. Whole-genome sequence variation, population structure and demographic history of the Dutch population. Nat Genet. 2014;46:818-25.
-
(2014)
Nat Genet
, vol.46
, pp. 818-825
-
-
Francioli, L.C.1
Menelaou, A.2
Pulit, S.L.3
Dijk, F.4
Palamara, P.F.5
Elbers, C.C.6
-
49
-
-
84891783452
-
The Database of Genomic Variants: a curated collection of structural variation in the human genome
-
MacDonald JR, Ziman R, Yuen RK, Feuk L, Scherer SW. The Database of Genomic Variants: a curated collection of structural variation in the human genome. Nucleic Acids Res. 2014;42:D986-92.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D986-D992
-
-
MacDonald, J.R.1
Ziman, R.2
Yuen, R.K.3
Feuk, L.4
Scherer, S.W.5
-
50
-
-
84891785351
-
InvFEST, a database integrating information of polymorphic inversions in the human genome
-
Martinez-Fundichely A, Casillas S, Egea R, Ramia M, Barbadilla A, Pantano L, et al. InvFEST, a database integrating information of polymorphic inversions in the human genome. Nucleic Acids Res. 2014;42:D1027-32.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D1027-D1032
-
-
Martinez-Fundichely, A.1
Casillas, S.2
Egea, R.3
Ramia, M.4
Barbadilla, A.5
Pantano, L.6
-
51
-
-
84931292199
-
Analysis of deletion breakpoints from 1,092 humans reveals details of mutation mechanisms
-
Abyzov A, Li S, Kim DR, Mohiyuddin M, Stutz AM, Parrish NF, et al. Analysis of deletion breakpoints from 1,092 humans reveals details of mutation mechanisms. Nat Commun. 2015;6:7256.
-
(2015)
Nat Commun
, vol.6
, pp. 7256
-
-
Abyzov, A.1
Li, S.2
Kim, D.R.3
Mohiyuddin, M.4
Stutz, A.M.5
Parrish, N.F.6
-
52
-
-
77951700086
-
Mutation spectrum revealed by breakpoint sequencing of human germline CNVs
-
Conrad DF, Bird C, Blackburne B, Lindsay S, Mamanova L, Lee C, et al. Mutation spectrum revealed by breakpoint sequencing of human germline CNVs. Nat Genet. 2010;42:385-91.
-
(2010)
Nat Genet
, vol.42
, pp. 385-391
-
-
Conrad, D.F.1
Bird, C.2
Blackburne, B.3
Lindsay, S.4
Mamanova, L.5
Lee, C.6
-
53
-
-
67649878596
-
The DNA replication FoSTeS/MMBIR mechanism can generate genomic, genic and exonic complex rearrangements in humans
-
Zhang F, Khajavi M, Connolly AM, Towne CF, Batish SD, Lupski JR. The DNA replication FoSTeS/MMBIR mechanism can generate genomic, genic and exonic complex rearrangements in humans. Nat Genet. 2009;41:849-53.
-
(2009)
Nat Genet
, vol.41
, pp. 849-853
-
-
Zhang, F.1
Khajavi, M.2
Connolly, A.M.3
Towne, C.F.4
Batish, S.D.5
Lupski, J.R.6
-
54
-
-
84930941966
-
Chromothripsis from DNA damage in micronuclei
-
Zhang CZ, Spektor A, Cornils H, Francis JM, Jackson EK, Liu S, et al. Chromothripsis from DNA damage in micronuclei. Nature. 2015;522:179-84.
-
(2015)
Nature
, vol.522
, pp. 179-184
-
-
Zhang, C.Z.1
Spektor, A.2
Cornils, H.3
Francis, J.M.4
Jackson, E.K.5
Liu, S.6
-
55
-
-
84975804424
-
Mapping copy number variation by population-scale genome sequencing
-
Mills RE, Walter K, Stewart C, Handsaker RE, Chen K, Alkan C, et al. Mapping copy number variation by population-scale genome sequencing. Nature. 2011;470:59-65.
-
(2011)
Nature
, vol.470
, pp. 59-65
-
-
Mills, R.E.1
Walter, K.2
Stewart, C.3
Handsaker, R.E.4
Chen, K.5
Alkan, C.6
-
56
-
-
34347348166
-
Challenges and standards in integrating surveys of structural variation
-
Scherer SW, Lee C, Birney E, Altshuler DM, Eichler EE, Carter NP, et al. Challenges and standards in integrating surveys of structural variation. Nat Genet. 2007;39:S7-S15.
-
(2007)
Nat Genet
, vol.39
, pp. S7-S15
-
-
Scherer, S.W.1
Lee, C.2
Birney, E.3
Altshuler, D.M.4
Eichler, E.E.5
Carter, N.P.6
-
57
-
-
85037550429
-
Detection of genomic structural variants from next-generation sequencing data
-
Tattini L, D'Aurizio R, Magi A. Detection of genomic structural variants from next-generation sequencing data. Front Bioeng Biotechnol. 2015;3:92.
-
(2015)
Front Bioeng Biotechnol
, vol.3
, pp. 92
-
-
Tattini, L.1
D'Aurizio, R.2
Magi, A.3
-
58
-
-
84995686735
-
Interchromosomal core duplicons drive both evolutionary instability and disease susceptibility of the Chromosome 8p23.1 region
-
Mohajeri K, Cantsilieris S, Huddleston J, Nelson BJ, Coe BP, Campbell CD, et al. Interchromosomal core duplicons drive both evolutionary instability and disease susceptibility of the Chromosome 8p23.1 region. Genome Res. 2016;26:1453-67.
-
(2016)
Genome Res
, vol.26
, pp. 1453-1467
-
-
Mohajeri, K.1
Cantsilieris, S.2
Huddleston, J.3
Nelson, B.J.4
Coe, B.P.5
Campbell, C.D.6
-
59
-
-
84995581674
-
Characterizing polymorphic inversions in human genomes by single-cell sequencing
-
Sanders AD, Hills M, Porubsky D, Guryev V, Falconer E, Lansdorp PM. Characterizing polymorphic inversions in human genomes by single-cell sequencing. Genome Res. 2016;26:1575-87.
-
(2016)
Genome Res
, vol.26
, pp. 1575-1587
-
-
Sanders, A.D.1
Hills, M.2
Porubsky, D.3
Guryev, V.4
Falconer, E.5
Lansdorp, P.M.6
-
60
-
-
84255194654
-
Effects of inversions on within- and between-species recombination and divergence
-
Stevison LS, Hoehn KB, Noor MA. Effects of inversions on within- and between-species recombination and divergence. Genome Biol Evol. 2011;3:830-41.
-
(2011)
Genome Biol Evol
, vol.3
, pp. 830-841
-
-
Stevison, L.S.1
Hoehn, K.B.2
Noor, M.A.3
-
61
-
-
63049126614
-
Using RepeatMasker to identify repetitive elements in genomic sequences
-
Chapter 4(Unit 4)
-
Tarailo-Graovac M, Chen N. Using RepeatMasker to identify repetitive elements in genomic sequences. Curr Protoc Bioinformatics. 2009;Chapter 4(Unit 4):10.
-
(2009)
Curr Protoc Bioinformatics
, pp. 10
-
-
Tarailo-Graovac, M.1
Chen, N.2
-
62
-
-
0035487212
-
Segmental duplications: an 'expanding' role in genomic instability and disease
-
Emanuel BS, Shaikh TH. Segmental duplications: an 'expanding' role in genomic instability and disease. Nat Rev Genet. 2001;2:791-800.
-
(2001)
Nat Rev Genet
, vol.2
, pp. 791-800
-
-
Emanuel, B.S.1
Shaikh, T.H.2
-
63
-
-
84960894307
-
Haplotyping germline and cancer genomes with high-throughput linked-read sequencing
-
Zheng GX, Lau BT, Schnall-Levin M, Jarosz M, Bell JM, Hindson CM, et al. Haplotyping germline and cancer genomes with high-throughput linked-read sequencing. Nat Biotechnol. 2016;34:303-11.
-
(2016)
Nat Biotechnol
, vol.34
, pp. 303-311
-
-
Zheng, G.X.1
Lau, B.T.2
Schnall-Levin, M.3
Jarosz, M.4
Bell, J.M.5
Hindson, C.M.6
-
64
-
-
84863116742
-
A systematic survey of loss-of-function variants in human protein-coding genes
-
MacArthur DG, Balasubramanian S, Frankish A, Huang N, Morris J, Walter K, et al. A systematic survey of loss-of-function variants in human protein-coding genes. Science. 2012;335:823-8.
-
(2012)
Science
, vol.335
, pp. 823-828
-
-
MacArthur, D.G.1
Balasubramanian, S.2
Frankish, A.3
Huang, N.4
Morris, J.5
Walter, K.6
-
65
-
-
84982253941
-
Analysis of protein-coding genetic variation in 60,706 humans
-
Lek M, Karczewski KJ, Minikel EV, Samocha KE, Banks E, Fennell T, et al. Analysis of protein-coding genetic variation in 60,706 humans. Nature. 2016;536:285-91.
-
(2016)
Nature
, vol.536
, pp. 285-291
-
-
Lek, M.1
Karczewski, K.J.2
Minikel, E.V.3
Samocha, K.E.4
Banks, E.5
Fennell, T.6
-
66
-
-
84922394049
-
A framework for the interpretation of de novo mutation in human disease
-
Samocha KE, Robinson EB, Sanders SJ, Stevens C, Sabo A, McGrath LM, et al. A framework for the interpretation of de novo mutation in human disease. Nat Genet. 2014;46:944-50.
-
(2014)
Nat Genet
, vol.46
, pp. 944-950
-
-
Samocha, K.E.1
Robinson, E.B.2
Sanders, S.J.3
Stevens, C.4
Sabo, A.5
McGrath, L.M.6
-
67
-
-
84884592445
-
Genic intolerance to functional variation and the interpretation of personal genomes
-
Petrovski S, Wang Q, Heinzen EL, Allen AS, Goldstein DB. Genic intolerance to functional variation and the interpretation of personal genomes. PLoS Genet. 2013;9:e1003709.
-
(2013)
PLoS Genet
, vol.9
-
-
Petrovski, S.1
Wang, Q.2
Heinzen, E.L.3
Allen, A.S.4
Goldstein, D.B.5
-
68
-
-
84867724867
-
An informatics approach to analyzing the incidentalome
-
Berg JS, Adams M, Nassar N, Bizon C, Lee K, Schmitt CP, et al. An informatics approach to analyzing the incidentalome. Genet Med. 2013;15:36-44.
-
(2013)
Genet Med
, vol.15
, pp. 36-44
-
-
Berg, J.S.1
Adams, M.2
Nassar, N.3
Bizon, C.4
Lee, K.5
Schmitt, C.P.6
-
69
-
-
45449101500
-
Natural selection on genes that underlie human disease susceptibility
-
Blekhman R, Man O, Herrmann L, Boyko AR, Indap A, Kosiol C, et al. Natural selection on genes that underlie human disease susceptibility. Curr Biol. 2008;18:883-9.
-
(2008)
Curr Biol
, vol.18
, pp. 883-889
-
-
Blekhman, R.1
Man, O.2
Herrmann, L.3
Boyko, A.R.4
Indap, A.5
Kosiol, C.6
-
70
-
-
84891809093
-
ClinVar: public archive of relationships among sequence variation and human phenotype
-
Landrum MJ, Lee JM, Riley GR, Jang W, Rubinstein WS, Church DM, et al. ClinVar: public archive of relationships among sequence variation and human phenotype. Nucleic Acids Res. 2014;42:D980-5.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D980-D985
-
-
Landrum, M.J.1
Lee, J.M.2
Riley, G.R.3
Jang, W.4
Rubinstein, W.S.5
Church, D.M.6
-
71
-
-
84945478498
-
Genomic instability in the PARK2 locus is associated with Parkinson's disease
-
Ambroziak W, Koziorowski D, Duszyc K, Gorka-Skoczylas P, Potulska-Chromik A, Slawek J, et al. Genomic instability in the PARK2 locus is associated with Parkinson's disease. J Appl Genet. 2015;56:451-61.
-
(2015)
J Appl Genet
, vol.56
, pp. 451-461
-
-
Ambroziak, W.1
Koziorowski, D.2
Duszyc, K.3
Gorka-Skoczylas, P.4
Potulska-Chromik, A.5
Slawek, J.6
-
72
-
-
81755183108
-
Relative burden of large CNVs on a range of neurodevelopmental phenotypes
-
Girirajan S, Brkanac Z, Coe BP, Baker C, Vives L, Vu TH, et al. Relative burden of large CNVs on a range of neurodevelopmental phenotypes. PLoS Genet. 2011;7:e1002334.
-
(2011)
PLoS Genet
, vol.7
-
-
Girirajan, S.1
Brkanac, Z.2
Coe, B.P.3
Baker, C.4
Vives, L.5
Vu, T.H.6
-
73
-
-
84975810789
-
Burden analysis of rare microdeletions suggests a strong impact of neurodevelopmental genes in genetic generalised epilepsies
-
Lal D, Ruppert AK, Trucks H, Schulz H, de Kovel CG, Kasteleijn-Nolst Trenite D, et al. Burden analysis of rare microdeletions suggests a strong impact of neurodevelopmental genes in genetic generalised epilepsies. PLoS Genet. 2015;11:e1005226.
-
(2015)
PLoS Genet
, vol.11
-
-
Lal, D.1
Ruppert, A.K.2
Trucks, H.3
Schulz, H.4
Kovel, C.G.5
Kasteleijn-Nolst Trenite, D.6
-
74
-
-
84876585949
-
Rare CNVs and tag SNPs at 15q11.2 are associated with schizophrenia in the Han Chinese population
-
Zhao Q, Li T, Zhao X, Huang K, Wang T, Li Z, et al. Rare CNVs and tag SNPs at 15q11.2 are associated with schizophrenia in the Han Chinese population. Schizophr Bull. 2013;39:712-9.
-
(2013)
Schizophr Bull
, vol.39
, pp. 712-719
-
-
Zhao, Q.1
Li, T.2
Zhao, X.3
Huang, K.4
Wang, T.5
Li, Z.6
-
75
-
-
84890207463
-
Identification of pathogenic gene variants in small families with intellectually disabled siblings by exome sequencing
-
Schuurs-Hoeijmakers JH, Vulto-van Silfhout AT, Vissers LE, van de Vondervoort II, van Bon BW, de Ligt J, et al. Identification of pathogenic gene variants in small families with intellectually disabled siblings by exome sequencing. J Med Genet. 2013;50:802-11.
-
(2013)
J Med Genet
, vol.50
, pp. 802-811
-
-
Schuurs-Hoeijmakers, J.H.1
Vulto-van Silfhout, A.T.2
Vissers, L.E.3
Vondervoort, I.I.4
Bon, B.W.5
Ligt, J.6
-
76
-
-
84894305155
-
The strength of combined cytogenetic and mate-pair sequencing techniques illustrated by a germline chromothripsis rearrangement involving FOXP2
-
Nazaryan L, Stefanou EG, Hansen C, Kosyakova N, Bak M, Sharkey FH, et al. The strength of combined cytogenetic and mate-pair sequencing techniques illustrated by a germline chromothripsis rearrangement involving FOXP2. Eur J Hum Genet. 2014;22:338-43.
-
(2014)
Eur J Hum Genet
, vol.22
, pp. 338-343
-
-
Nazaryan, L.1
Stefanou, E.G.2
Hansen, C.3
Kosyakova, N.4
Bak, M.5
Sharkey, F.H.6
-
77
-
-
84926249075
-
Chromothripsis in healthy individuals affects multiple protein-coding genes and can result in severe congenital abnormalities in offspring
-
de Pagter MS, van Roosmalen MJ, Baas AF, Renkens I, Duran KJ, van Binsbergen E, et al. Chromothripsis in healthy individuals affects multiple protein-coding genes and can result in severe congenital abnormalities in offspring. Am J Hum Genet. 2015;96:651-6.
-
(2015)
Am J Hum Genet
, vol.96
, pp. 651-656
-
-
Pagter, M.S.1
Roosmalen, M.J.2
Baas, A.F.3
Renkens, I.4
Duran, K.J.5
Binsbergen, E.6
-
78
-
-
84964847934
-
A germline chromothripsis event stably segregating in 11 individuals through three generations
-
Bertelsen B, Nazaryan-Petersen L, Sun W, Mehrjouy MM, Xie G, Chen W, et al. A germline chromothripsis event stably segregating in 11 individuals through three generations. Genet Med. 2016;18:494-500.
-
(2016)
Genet Med
, vol.18
, pp. 494-500
-
-
Bertelsen, B.1
Nazaryan-Petersen, L.2
Sun, W.3
Mehrjouy, M.M.4
Xie, G.5
Chen, W.6
-
79
-
-
84879243533
-
Chromothripsis in congenital disorders and cancer: similarities and differences
-
Kloosterman WP, Cuppen E. Chromothripsis in congenital disorders and cancer: similarities and differences. Curr Opin Cell Biol. 2013;25:341-8.
-
(2013)
Curr Opin Cell Biol
, vol.25
, pp. 341-348
-
-
Kloosterman, W.P.1
Cuppen, E.2
-
80
-
-
84888869068
-
Chromothripsis and beyond: rapid genome evolution from complex chromosomal rearrangements
-
Zhang CZ, Leibowitz ML, Pellman D. Chromothripsis and beyond: rapid genome evolution from complex chromosomal rearrangements. Genes Dev. 2013;27:2513-30.
-
(2013)
Genes Dev
, vol.27
, pp. 2513-2530
-
-
Zhang, C.Z.1
Leibowitz, M.L.2
Pellman, D.3
-
81
-
-
84894271576
-
Chromothripsis: how does such a catastrophic event impact human reproduction?
-
Pellestor F. Chromothripsis: how does such a catastrophic event impact human reproduction? Hum Reprod. 2014;29:388-93.
-
(2014)
Hum Reprod
, vol.29
, pp. 388-393
-
-
Pellestor, F.1
-
82
-
-
80053364894
-
Chromosome segregation errors as a cause of DNA damage and structural chromosome aberrations
-
Janssen A, van der Burg M, Szuhai K, Kops GJ, Medema RH. Chromosome segregation errors as a cause of DNA damage and structural chromosome aberrations. Science. 2011;333:1895-8.
-
(2011)
Science
, vol.333
, pp. 1895-1898
-
-
Janssen, A.1
Burg, M.2
Szuhai, K.3
Kops, G.J.4
Medema, R.H.5
-
83
-
-
84856424908
-
DNA breaks and chromosome pulverization from errors in mitosis
-
Crasta K, Ganem NJ, Dagher R, Lantermann AB, Ivanova EV, Pan Y, et al. DNA breaks and chromosome pulverization from errors in mitosis. Nature. 2012;482:53-8.
-
(2012)
Nature
, vol.482
, pp. 53-58
-
-
Crasta, K.1
Ganem, N.J.2
Dagher, R.3
Lantermann, A.B.4
Ivanova, E.V.5
Pan, Y.6
-
84
-
-
84865995513
-
Shattered and stitched chromosomes-chromothripsis and chromoanasynthesis-manifestations of a new chromosome crisis?
-
Righolt C, Mai S. Shattered and stitched chromosomes-chromothripsis and chromoanasynthesis-manifestations of a new chromosome crisis? Genes Chromosomes Cancer. 2012;51:975-81.
-
(2012)
Genes Chromosomes Cancer
, vol.51
, pp. 975-981
-
-
Righolt, C.1
Mai, S.2
-
85
-
-
84875135862
-
Criteria for inference of chromothripsis in cancer genomes
-
Korbel JO, Campbell PJ. Criteria for inference of chromothripsis in cancer genomes. Cell. 2013;152:1226-36.
-
(2013)
Cell
, vol.152
, pp. 1226-1236
-
-
Korbel, J.O.1
Campbell, P.J.2
-
86
-
-
84922011954
-
Chromothripsis: potential origin in gametogenesis and preimplantation cell divisions
-
Pellestor F, Gatinois V, Puechberty J, Genevieve D, Lefort G. Chromothripsis: potential origin in gametogenesis and preimplantation cell divisions. A Rev Fertil Steril. 2014;102:1785-96.
-
(2014)
A Rev Fertil Steril
, vol.102
, pp. 1785-1796
-
-
Pellestor, F.1
Gatinois, V.2
Puechberty, J.3
Genevieve, D.4
Lefort, G.5
-
87
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li H, Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics. 2009;25:1754-60.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
88
-
-
84907023732
-
SAMBLASTER: fast duplicate marking and structural variant read extraction
-
Faust GG, Hall IM. SAMBLASTER: fast duplicate marking and structural variant read extraction. Bioinformatics. 2014;30:2503-5.
-
(2014)
Bioinformatics
, vol.30
, pp. 2503-2505
-
-
Faust, G.G.1
Hall, I.M.2
-
89
-
-
84931049513
-
Sambamba: fast processing of NGS alignment formats
-
Tarasov A, Vilella AJ, Cuppen E, Nijman IJ, Prins P. Sambamba: fast processing of NGS alignment formats. Bioinformatics. 2015;31(12):2032-4.
-
(2015)
Bioinformatics
, vol.31
, Issue.12
, pp. 2032-2034
-
-
Tarasov, A.1
Vilella, A.J.2
Cuppen, E.3
Nijman, I.J.4
Prins, P.5
-
90
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics. 2009;25:2078-9.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
-
91
-
-
79958151996
-
BamTools: a C++ API and toolkit for analyzing and managing BAM files
-
Barnett DW, Garrison EK, Quinlan AR, Stromberg MP, Marth GT. BamTools: a C++ API and toolkit for analyzing and managing BAM files. Bioinformatics. 2011;27:1691-2.
-
(2011)
Bioinformatics
, vol.27
, pp. 1691-1692
-
-
Barnett, D.W.1
Garrison, E.K.2
Quinlan, A.R.3
Stromberg, M.P.4
Marth, G.T.5
-
92
-
-
84966658505
-
Manta: rapid detection of structural variants and indels for germline and cancer sequencing applications
-
Chen X, Schulz-Trieglaff O, Shaw R, Barnes B, Schlesinger F, Kallberg M, et al. Manta: rapid detection of structural variants and indels for germline and cancer sequencing applications. Bioinformatics. 2016;32:1220-2.
-
(2016)
Bioinformatics
, vol.32
, pp. 1220-1222
-
-
Chen, X.1
Schulz-Trieglaff, O.2
Shaw, R.3
Barnes, B.4
Schlesinger, F.5
Kallberg, M.6
-
93
-
-
84912096454
-
LUMPY: a probabilistic framework for structural variant discovery
-
Layer RM, Chiang C, Quinlan AR, Hall IM. LUMPY: a probabilistic framework for structural variant discovery. Genome Biol. 2014;15:R84.
-
(2014)
Genome Biol
, vol.15
, pp. R84
-
-
Layer, R.M.1
Chiang, C.2
Quinlan, A.R.3
Hall, I.M.4
-
94
-
-
35348988679
-
Paired-end mapping reveals extensive structural variation in the human genome
-
Korbel JO, Urban AE, Affourtit JP, Godwin B, Grubert F, Simons JF, et al. Paired-end mapping reveals extensive structural variation in the human genome. Science. 2007;318:420-6.
-
(2007)
Science
, vol.318
, pp. 420-426
-
-
Korbel, J.O.1
Urban, A.E.2
Affourtit, J.P.3
Godwin, B.4
Grubert, F.5
Simons, J.F.6
-
95
-
-
84949227547
-
BEDTools: The Swiss-Army tool for genome feature analysis
-
Quinlan AR. BEDTools: The Swiss-Army tool for genome feature analysis. Curr Protoc Bioinformatics. 2014;47:11 12 11-34.
-
(2014)
Curr Protoc Bioinformatics
, vol.47
, pp. 11 12 11-11 12 34
-
-
Quinlan, A.R.1
-
96
-
-
85014508858
-
CNView: a visualization and annotation tool for copy number variation from whole-genome sequencing
-
bioRxiv.
-
Collins RL, Stone MR, Brand H, Glessner JT, Talkowski ME. CNView: a visualization and annotation tool for copy number variation from whole-genome sequencing. bioRxiv. 2016.
-
(2016)
-
-
Collins, R.L.1
Stone, M.R.2
Brand, H.3
Glessner, J.T.4
Talkowski, M.E.5
-
97
-
-
0033990048
-
Primer3 on the WWW for general users and for biologist programmers
-
Rozen S, Skaletsky H. Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol. 2000;132:365-86.
-
(2000)
Methods Mol Biol
, vol.132
, pp. 365-386
-
-
Rozen, S.1
Skaletsky, H.2
-
98
-
-
0036226603
-
BLAT--the BLAST-like alignment tool
-
Kent WJ. BLAT--the BLAST-like alignment tool. Genome Res. 2002;12:656-64.
-
(2002)
Genome Res
, vol.12
, pp. 656-664
-
-
Kent, W.J.1
-
99
-
-
79958074870
-
Multiple recurrent de novo CNVs, including duplications of the 7q11.23 Williams syndrome region, are strongly associated with autism
-
Sanders SJ, Ercan-Sencicek AG, Hus V, Luo R, Murtha MT, Moreno-De-Luca D, et al. Multiple recurrent de novo CNVs, including duplications of the 7q11.23 Williams syndrome region, are strongly associated with autism. Neuron. 2011;70:863-85.
-
(2011)
Neuron
, vol.70
, pp. 863-885
-
-
Sanders, S.J.1
Ercan-Sencicek, A.G.2
Hus, V.3
Luo, R.4
Murtha, M.T.5
Moreno-De-Luca, D.6
-
100
-
-
35948984173
-
PennCNV: an integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data
-
Wang K, Li M, Hadley D, Liu R, Glessner J, Grant SF, et al. PennCNV: an integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data. Genome Res. 2007;17:1665-74.
-
(2007)
Genome Res
, vol.17
, pp. 1665-1674
-
-
Wang, K.1
Li, M.2
Hadley, D.3
Liu, R.4
Glessner, J.5
Grant, S.F.6
-
101
-
-
34247877877
-
QuantiSNP: an Objective Bayes Hidden-Markov Model to detect and accurately map copy number variation using SNP genotyping data
-
Colella S, Yau C, Taylor JM, Mirza G, Butler H, Clouston P, et al. QuantiSNP: an Objective Bayes Hidden-Markov Model to detect and accurately map copy number variation using SNP genotyping data. Nucleic Acids Res. 2007;35:2013-25.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 2013-2025
-
-
Colella, S.1
Yau, C.2
Taylor, J.M.3
Mirza, G.4
Butler, H.5
Clouston, P.6
-
102
-
-
79952592810
-
A fast, lock-free approach for efficient parallel counting of occurrences of k-mers
-
Marcais G, Kingsford C. A fast, lock-free approach for efficient parallel counting of occurrences of k-mers. Bioinformatics. 2011;27:764-70.
-
(2011)
Bioinformatics
, vol.27
, pp. 764-770
-
-
Marcais, G.1
Kingsford, C.2
-
103
-
-
84890081976
-
Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM
-
arXiv
-
Li H. Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM. arXiv 2013.
-
(2013)
-
-
Li, H.1
-
104
-
-
84954403183
-
Genome sequencing of autism-affected families reveals disruption of putative noncoding regulatory DNA
-
Turner TN, Hormozdiari F, Duyzend MH, McClymont SA, Hook PW, Iossifov I, et al. Genome sequencing of autism-affected families reveals disruption of putative noncoding regulatory DNA. Am J Hum Genet. 2016;98:58-74.
-
(2016)
Am J Hum Genet
, vol.98
, pp. 58-74
-
-
Turner, T.N.1
Hormozdiari, F.2
Duyzend, M.H.3
McClymont, S.A.4
Hook, P.W.5
Iossifov, I.6
-
105
-
-
84861400043
-
cn.MOPS: mixture of Poissons for discovering copy number variations in next-generation sequencing data with a low false discovery rate
-
Klambauer G, Schwarzbauer K, Mayr A, Clevert DA, Mitterecker A, Bodenhofer U, et al. cn.MOPS: mixture of Poissons for discovering copy number variations in next-generation sequencing data with a low false discovery rate. Nucleic Acids Res. 2012;40:e69.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Klambauer, G.1
Schwarzbauer, K.2
Mayr, A.3
Clevert, D.A.4
Mitterecker, A.5
Bodenhofer, U.6
-
106
-
-
84892728434
-
Sequencing depth and coverage: key considerations in genomic analyses
-
Sims D, Sudbery I, Ilott NE, Heger A, Ponting CP. Sequencing depth and coverage: key considerations in genomic analyses. Nat Rev Genet. 2014;15:121-32.
-
(2014)
Nat Rev Genet
, vol.15
, pp. 121-132
-
-
Sims, D.1
Sudbery, I.2
Ilott, N.E.3
Heger, A.4
Ponting, C.P.5
-
107
-
-
84946100079
-
The UCSC Genome Browser database. update
-
Rosenbloom KR, Armstrong J, Barber GP, Casper J, Clawson H, Diekhans M, et al. The UCSC Genome Browser database. update. Nucleic Acids Res. 2015;2015(43):D670-81.
-
(2015)
Nucleic Acids Res
, vol.2015
, Issue.43
, pp. D670-D681
-
-
Rosenbloom, K.R.1
Armstrong, J.2
Barber, G.P.3
Casper, J.4
Clawson, H.5
Diekhans, M.6
-
108
-
-
0023988195
-
Genomic mapping by fingerprinting random clones: a mathematical analysis
-
Lander ES, Waterman MS. Genomic mapping by fingerprinting random clones: a mathematical analysis. Genomics. 1988;2:231-9.
-
(1988)
Genomics
, vol.2
, pp. 231-239
-
-
Lander, E.S.1
Waterman, M.S.2
-
109
-
-
84946037477
-
Ensembl 2015
-
Cunningham F, Amode MR, Barrell D, Beal K, Billis K, Brent S, et al. Ensembl 2015. Nucleic Acids Res. 2015;43:D662-9.
-
(2015)
Nucleic Acids Res
, vol.43
, pp. D662-D669
-
-
Cunningham, F.1
Amode, M.R.2
Barrell, D.3
Beal, K.4
Billis, K.5
Brent, S.6
-
110
-
-
84861095603
-
Topological domains in mammalian genomes identified by analysis of chromatin interactions
-
Dixon JR, Selvaraj S, Yue F, Kim A, Li Y, Shen Y, et al. Topological domains in mammalian genomes identified by analysis of chromatin interactions. Nature. 2012;485:376-80.
-
(2012)
Nature
, vol.485
, pp. 376-380
-
-
Dixon, J.R.1
Selvaraj, S.2
Yue, F.3
Kim, A.4
Li, Y.5
Shen, Y.6
-
111
-
-
84865760395
-
GENCODE: the reference human genome annotation for The ENCODE Project
-
Harrow J, Frankish A, Gonzalez JM, Tapanari E, Diekhans M, Kokocinski F, et al. GENCODE: the reference human genome annotation for The ENCODE Project. Genome Res. 2012;22:1760-74.
-
(2012)
Genome Res
, vol.22
, pp. 1760-1774
-
-
Harrow, J.1
Frankish, A.2
Gonzalez, J.M.3
Tapanari, E.4
Diekhans, M.5
Kokocinski, F.6
-
112
-
-
84865755978
-
The accessible chromatin landscape of the human genome
-
Thurman RE, Rynes E, Humbert R, Vierstra J, Maurano MT, Haugen E, et al. The accessible chromatin landscape of the human genome. Nature. 2012;489:75-82.
-
(2012)
Nature
, vol.489
, pp. 75-82
-
-
Thurman, R.E.1
Rynes, E.2
Humbert, R.3
Vierstra, J.4
Maurano, M.T.5
Haugen, E.6
-
113
-
-
84960894307
-
Haplotyping germline and cancer genomes with high-throughput linked-read sequencing
-
Zheng GX, Lau BT, Schnall-Levin M, Jarosz M, Bell JM, Hindson CM, et al. Haplotyping germline and cancer genomes with high-throughput linked-read sequencing. Nat Biotechnol. 2016;34(3):303-11.
-
(2016)
Nat Biotechnol
, vol.34
, Issue.3
, pp. 303-311
-
-
Zheng, G.X.1
Lau, B.T.2
Schnall-Levin, M.3
Jarosz, M.4
Bell, J.M.5
Hindson, C.M.6
-
114
-
-
84865790047
-
An integrated encyclopedia of DNA elements in the human genome
-
ENCODE Project Consortium. An integrated encyclopedia of DNA elements in the human genome. Nature. 2012;489:57-74.
-
(2012)
Nature
, vol.489
, pp. 57-74
-
-
-
115
-
-
69649109364
-
Circos: an information aesthetic for comparative genomics
-
Krzywinski M, Schein J, Birol I, Connors J, Gascoyne R, Horsman D, et al. Circos: an information aesthetic for comparative genomics. Genome Res. 2009;19:1639-45.
-
(2009)
Genome Res
, vol.19
, pp. 1639-1645
-
-
Krzywinski, M.1
Schein, J.2
Birol, I.3
Connors, J.4
Gascoyne, R.5
Horsman, D.6
|