-
1
-
-
84905579746
-
Whole-genome sequence variation, population structure and demographic history of the Dutch population
-
Genome of the Netherlands Consortium
-
Genome of the Netherlands Consortium. Whole-genome sequence variation, population structure and demographic history of the Dutch population. Nat. Genet. 46, 818-825 (2014).
-
(2014)
Nat. Genet
, vol.46
, pp. 818-825
-
-
-
2
-
-
84908551473
-
Improved imputation quality of low-frequency and rare variants in European samples using the 'Genome of the Netherlands'
-
Deelen, P. et al. Improved imputation quality of low-frequency and rare variants in European samples using the 'Genome of The Netherlands'. Eur. J. Hum. Genet. 22, 1321-1326 (2014).
-
(2014)
Eur. J. Hum. Genet
, vol.22
, pp. 1321-1326
-
-
Deelen, P.1
-
3
-
-
79959503826
-
The international hapmap project
-
International HapMap Consortium
-
International HapMap Consortium. The international hapmap project. Nature 426, 789-796 (2003).
-
(2003)
Nature
, vol.426
, pp. 789-796
-
-
-
4
-
-
77956331627
-
Integrating common and rare genetic variation in diverse human populations
-
International HapMap 3 Consortium et al
-
International HapMap 3 Consortium et al. Integrating common and rare genetic variation in diverse human populations. Nature 467, 52-58 (2010).
-
(2010)
Nature
, vol.467
, pp. 52-58
-
-
-
5
-
-
77950461601
-
Origins and functional impact of copy number variation in the human genome
-
Conrad, D. F. et al. Origins and functional impact of copy number variation in the human genome. Nature 464, 704-712 (2010).
-
(2010)
Nature
, vol.464
, pp. 704-712
-
-
Conrad, D.F.1
-
6
-
-
59149098800
-
Deletion of the late cornified envelope LCE3B and LCE3C genes as a susceptibility factor for psoriasis
-
De Cid, R. et al. Deletion of the late cornified envelope LCE3B and LCE3C genes as a susceptibility factor for psoriasis. Nat. Genet. 41, 211-215 (2009).
-
(2009)
Nat. Genet
, vol.41
, pp. 211-215
-
-
De Cid, R.1
-
7
-
-
34249815834
-
FCGR3B copy number variation is associated with susceptibility to systemic, but not organ-specific, autoimmunity
-
Fanciulli, M. et al. FCGR3B copy number variation is associated with susceptibility to systemic, but not organ-specific, autoimmunity. Nat. Genet. 39, 721-723 (2007).
-
(2007)
Nat. Genet
, vol.39
, pp. 721-723
-
-
Fanciulli, M.1
-
8
-
-
81755183108
-
Relative burden of large CNVs on a range of neurodevelopmental phenotypes
-
Girirajan, S. et al. Relative burden of large CNVs on a range of neurodevelopmental phenotypes. PLOS Genet. 7, e1002334 (2011).
-
(2011)
PLOS Genet
, vol.7
, pp. e1002334
-
-
Girirajan, S.1
-
9
-
-
61649100746
-
Genomic microarrays in mental retardation: A practical workflow for diagnostic applications
-
Koolen, D. A. et al. Genomic microarrays in mental retardation: a practical workflow for diagnostic applications. Hum. Mutat. 30, 283-292 (2009).
-
(2009)
Hum. Mutat
, vol.30
, pp. 283-292
-
-
Koolen, D.A.1
-
10
-
-
43049107147
-
The functional impact of structural variation in humans
-
Hurles, M. E., Dermitzakis, E. T. & Tyler-Smith, C. The functional impact of structural variation in humans. Trends Genet. 24, 238-245 (2008).
-
(2008)
Trends Genet
, vol.24
, pp. 238-245
-
-
Hurles, M.E.1
Dermitzakis, E.T.2
Tyler-Smith, C.3
-
11
-
-
31144469134
-
Structural variation in the human genome
-
Feuk, L., Carson, A. R. & Scherer, S. W. Structural variation in the human genome. Nat. Rev. Genet. 7, 85-97 (2006).
-
(2006)
Nat. Rev. Genet
, vol.7
, pp. 85-97
-
-
Feuk, L.1
Carson, A.R.2
Scherer, S.W.3
-
12
-
-
84943171338
-
A global reference for human genetic variation
-
1,000 Genomes Project Consortium et al
-
1,000 Genomes Project Consortium et al. A global reference for human genetic variation. Nature 526, 68-74 (2015).
-
(2015)
Nature
, vol.526
, pp. 68-74
-
-
-
13
-
-
84942436432
-
Global diversity, population stratification, and selection of human copy-number variation
-
Sudmant, P. H. et al. Global diversity, population stratification, and selection of human copy-number variation. Science 349, aab3761 (2015).
-
(2015)
Science
, vol.349
, pp. aab3761
-
-
Sudmant, P.H.1
-
14
-
-
84943182461
-
An integrated map of structural variation in 2,504 human genomes
-
Sudmant, P. H. et al. An integrated map of structural variation in 2,504 human genomes. Nature 526, 75-81 (2015).
-
(2015)
Nature
, vol.526
, pp. 75-81
-
-
Sudmant, P.H.1
-
15
-
-
84945370533
-
Genome sequencing elucidates Sardinian genetic architecture and augments association analyses for lipid and blood inflammatory markers
-
Sidore, C. et al. Genome sequencing elucidates Sardinian genetic architecture and augments association analyses for lipid and blood inflammatory markers. Nat. Genet. 47, 1272-1281 (2015).
-
(2015)
Nat. Genet
, vol.47
, pp. 1272-1281
-
-
Sidore, C.1
-
16
-
-
84923112396
-
Novel variation and de novo mutation rates in populationwide de novo assembled Danish trios
-
Besenbacher, S. et al. Novel variation and de novo mutation rates in populationwide de novo assembled Danish trios. Nat. Commun. 6, 5969 (2015).
-
(2015)
Nat. Commun
, vol.6
, pp. 5969
-
-
Besenbacher, S.1
-
17
-
-
84943182742
-
The UK10K project identifies rare variants in health and disease
-
UK10K Consortium et al
-
UK10K Consortium et al. The UK10K project identifies rare variants in health and disease. Nature 526, 82-90 (2015).
-
(2015)
Nature
, vol.526
, pp. 82-90
-
-
-
18
-
-
84872333179
-
Deep whole-genome sequencing of 100 southeast Asian Malays
-
Wong, L.-P. et al. Deep whole-genome sequencing of 100 southeast Asian Malays. Am. J. Hum. Genet. 92, 52-66 (2013).
-
(2013)
Am. J. Hum. Genet
, vol.92
, pp. 52-66
-
-
Wong, L.-P.1
-
19
-
-
84892798985
-
The Genome of the Netherlands: Design, and project goals
-
Boomsma, D. I. et al. The Genome of the Netherlands: design, and project goals. Eur. J. Hum. Genet. 22, 221-227 (2013).
-
(2013)
Eur. J. Hum. Genet
, vol.22
, pp. 221-227
-
-
Boomsma, D.I.1
-
20
-
-
84937191220
-
Genome-wide patterns and properties of de novo mutations in humans
-
Francioli, L. C. et al. Genome-wide patterns and properties of de novo mutations in humans. Nat. Genet. 47, 822-826 (2015).
-
(2015)
Nat. Genet
, vol.47
, pp. 822-826
-
-
Francioli, L.C.1
-
21
-
-
84931833875
-
Characteristics of de novo structural changes in the human genome
-
Kloosterman, W. P. et al. Characteristics of de novo structural changes in the human genome. Genome Res. 25, 792-801 (2015).
-
(2015)
Genome Res
, vol.25
, pp. 792-801
-
-
Kloosterman, W.P.1
-
22
-
-
84912535591
-
GINDEL: Accurate genotype calling of insertions and deletions from low coverage population sequence reads
-
Chu, C., Zhang, J. & Wu, Y. GINDEL: accurate genotype calling of insertions and deletions from low coverage population sequence reads. PLOS ONE 9, e113324 (2014).
-
(2014)
PLOS ONE
, vol.9
, pp. e113324
-
-
Chu, C.1
Zhang, J.2
Wu, Y.3
-
23
-
-
84900348313
-
MATE-CLEVER: Mendelianinheritance-aware discovery and genotyping of midsize and long indels
-
Marschall, T., Hajirasouliha, I. & Schönhuth, A. MATE-CLEVER: Mendelianinheritance-aware discovery and genotyping of midsize and long indels. Bioinformatics 29, 3143-3150 (2013).
-
(2013)
Bioinformatics
, vol.29
, pp. 3143-3150
-
-
Marschall, T.1
Hajirasouliha, I.2
Schönhuth, A.3
-
24
-
-
33344458848
-
A comparison of phasing algorithms for trios and unrelated individuals
-
Marchini, J. et al. A comparison of phasing algorithms for trios and unrelated individuals. Am. J. Hum. Genet. 78, 437-450 (2006).
-
(2006)
Am. J. Hum. Genet
, vol.78
, pp. 437-450
-
-
Marchini, J.1
-
25
-
-
84871736050
-
Genotype calling and phasing using nextgeneration sequencing reads and a haplotype scaffold
-
Menelaou, A. & Marchini, J. Genotype calling and phasing using nextgeneration sequencing reads and a haplotype scaffold. Bioinformatics 29, 84-91 (2013).
-
(2013)
Bioinformatics
, vol.29
, pp. 84-91
-
-
Menelaou, A.1
Marchini, J.2
-
26
-
-
84925497196
-
Resolving the complexity of the human genome using single-molecule sequencing
-
Chaisson, M. J. P. et al. Resolving the complexity of the human genome using single-molecule sequencing. Nature 517, 608-611 (2015).
-
(2015)
Nature
, vol.517
, pp. 608-611
-
-
Chaisson, M.J.P.1
-
27
-
-
0035173378
-
DbSNP: The NCBI database of genetic variation
-
Sherry, S. T. et al. dbSNP: the NCBI database of genetic variation. Nucleic Acids Res. 29, 308-311 (2001).
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 308-311
-
-
Sherry, S.T.1
-
28
-
-
84891783452
-
The Database of Genomic Variants: A curated collection of structural variation in the human genome
-
MacDonald, J. R., Ziman, R., Yuen, R. K. C., Feuk, L. & Scherer, S. W. The Database of Genomic Variants: a curated collection of structural variation in the human genome. Nucleic Acids Res. 42, D986-D992 (2014).
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D986-D992
-
-
MacDonald, J.R.1
Ziman, R.2
Yuen, R.K.C.3
Feuk, L.4
Scherer, S.W.5
-
29
-
-
84873487706
-
Gene copy-number polymorphism caused by retrotransposition in humans
-
Schrider, D. R. et al. Gene copy-number polymorphism caused by retrotransposition in humans. PLOS Genet. 9, e1003242 (2013).
-
(2013)
PLOS Genet
, vol.9
, pp. e1003242
-
-
Schrider, D.R.1
-
30
-
-
84954358158
-
Identification of a 2Mb human ortholog of Drosophila eyes shut/spacemaker that is mutated in patients with retinitis pigmentosa
-
Collin, R. W. J. et al. Identification of a 2Mb human ortholog of Drosophila eyes shut/spacemaker that is mutated in patients with retinitis pigmentosa. Am. J. Hum. Genet. 83, 594-603 (2008).
-
(2008)
Am. J. Hum. Genet
, vol.83
, pp. 594-603
-
-
Collin, R.W.J.1
-
31
-
-
84942887758
-
SOAPdenovo2: An empirically improved memory-efficient shortread de novo assembler
-
Luo, R. et al. SOAPdenovo2: an empirically improved memory-efficient shortread de novo assembler. Gigascience 1, 18 (2012).
-
(2012)
Gigascience
, vol.1
, pp. 18
-
-
Luo, R.1
-
32
-
-
84975795680
-
An integrated map of genetic variation from 1,092 human genomes
-
1,000 Genomes Project Consortium et al
-
1,000 Genomes Project Consortium et al. An integrated map of genetic variation from 1,092 human genomes. Nature 491, 56-65 (2012).
-
(2012)
Nature
, vol.491
, pp. 56-65
-
-
-
33
-
-
84929224491
-
EQTL mapping identifies insertion-and deletion-specific eQTLs in multiple tissues
-
Huang, J. et al. eQTL mapping identifies insertion-and deletion-specific eQTLs in multiple tissues. Nat. Commun. 6, 6821 (2015).
-
(2015)
Nat. Commun
, vol.6
, pp. 6821
-
-
Huang, J.1
-
34
-
-
84891790401
-
The NHGRI GWAS Catalog, a curated resource of SNP-trait associations
-
Welter, D. et al. The NHGRI GWAS Catalog, a curated resource of SNP-trait associations. Nucleic Acids Res. 42, D1001-D1006 (2014).
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D1001-D1006
-
-
Welter, D.1
-
35
-
-
84865822182
-
Systematic localization of common disease-associated variation in regulatory DNA
-
Maurano, M. T. et al. Systematic localization of common disease-associated variation in regulatory DNA. Science 337, 1190-1195 (2012).
-
(2012)
Science
, vol.337
, pp. 1190-1195
-
-
Maurano, M.T.1
-
36
-
-
78649489009
-
Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci
-
Franke, A. et al. Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci. Nat. Genet. 42, 1118-1125 (2010).
-
(2010)
Nat. Genet
, vol.42
, pp. 1118-1125
-
-
Franke, A.1
-
37
-
-
84868336049
-
Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease
-
Jostins, L. et al. Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease. Nature 491, 119-124 (2012).
-
(2012)
Nature
, vol.491
, pp. 119-124
-
-
Jostins, L.1
-
38
-
-
84873348443
-
Common genetic variation and antidepressant efficacy in major depressive disorder: A meta-analysis of three genome-wide pharmacogenetic studies
-
GENDEP Investigators and MARS Investigators & STAR∗D Investigators
-
GENDEP Investigators, MARS Investigators & STAR∗D Investigators. Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies. Am. J. Psychiatry 170, 207-217 (2013).
-
(2013)
Am. J. Psychiatry
, vol.170
, pp. 207-217
-
-
-
39
-
-
77953808087
-
Genotype imputation for genome-wide association studies
-
Marchini, J. & Howie, B. Genotype imputation for genome-wide association studies. Nat. Rev. Genet. 11, 499-511 (2010).
-
(2010)
Nat. Rev. Genet
, vol.11
, pp. 499-511
-
-
Marchini, J.1
Howie, B.2
-
40
-
-
33846978695
-
Relative impact of nucleotide and copy number variation on gene expression phenotypes
-
Stranger, B. E. et al. Relative impact of nucleotide and copy number variation on gene expression phenotypes. Science 315, 848-853 (2007).
-
(2007)
Science
, vol.315
, pp. 848-853
-
-
Stranger, B.E.1
-
41
-
-
84940521469
-
Population-specific genotype imputations using minimac or IMPUTE2
-
Van Leeuwen, E. M. et al. Population-specific genotype imputations using minimac or IMPUTE2. Nat. Protoc. 10, 1285-1296 (2015).
-
(2015)
Nat. Protoc
, vol.10
, pp. 1285-1296
-
-
Van Leeuwen, E.M.1
-
42
-
-
84856478855
-
A linear complexity phasing method for thousands of genomes
-
Delaneau, O., Marchini, J. & Zagury, J.-F. A linear complexity phasing method for thousands of genomes. Nat. Methods 9, 179-181 (2012).
-
(2012)
Nat. Methods
, vol.9
, pp. 179-181
-
-
Delaneau, O.1
Marchini, J.2
Zagury, J.-F.3
|