-
2
-
-
85041584199
-
RNA polymerase reaction in bacteria
-
Lane, W.J.L.D., Ed.; Academic Press: Waltham, MA, USA
-
Jun, S.H.; Warner, B.A.; Murakami, K.S. RNA polymerase reaction in bacteria. In Encyclopedia of Biological Chemistry; Lane, W.J.L.D., Ed.; Academic Press: Waltham, MA, USA, 2013; pp. 167-172.
-
(2013)
Encyclopedia of Biological Chemistry
, pp. 167-172
-
-
Jun, S.H.1
Warner, B.A.2
Murakami, K.S.3
-
3
-
-
8944235551
-
Preparation and properties of RNApolymerase particles
-
Fuchs, E.; Zillig, W.; Hofschneider, P.H.; Preuss, A. Preparation and properties of RNApolymerase particles. J. Mol. Biol. 1964, 10, 546-550.
-
(1964)
J. Mol. Biol
, vol.10
, pp. 546-550
-
-
Fuchs, E.1
Zillig, W.2
Hofschneider, P.H.3
Preuss, A.4
-
4
-
-
0017111309
-
Crystallisation of DNA-dependent RNA polymerase from Thermus thermophilus HB 8
-
Tsuji, S.; Suzuki, K.; Imahori, K. Crystallisation of DNA-dependent RNA polymerase from Thermus thermophilus HB 8. Nature 1976, 261, 725-726.
-
(1976)
Nature
, vol.261
, pp. 725-726
-
-
Tsuji, S.1
Suzuki, K.2
Imahori, K.3
-
5
-
-
0028879825
-
Solution structure of the activator contact domain of the RNA polymerase alpha subunit
-
Jeon, Y.H.; Negishi, T.; Shirakawa, M.; Yamazaki, T.; Fujita, N.; Ishihama, A.; Kyogoku, Y. Solution structure of the activator contact domain of the RNA polymerase alpha subunit. Science 1995, 270, 1495-1497.
-
(1995)
Science
, vol.270
, pp. 1495-1497
-
-
Jeon, Y.H.1
Negishi, T.2
Shirakawa, M.3
Yamazaki, T.4
Fujita, N.5
Ishihama, A.6
Kyogoku, Y.7
-
6
-
-
0026471585
-
Role of the RNA polymerase alpha subunit in transcription activation
-
Ishihama, A. Role of the RNA polymerase alpha subunit in transcription activation. Mol. Microbiol. 1992, 6, 3283-3288.
-
(1992)
Mol. Microbiol
, vol.6
, pp. 3283-3288
-
-
Ishihama, A.1
-
7
-
-
0032504132
-
Structure of the Escherichia coli RNA polymerase alpha subunit amino-terminal domain
-
Zhang, G.; Darst, S.A. Structure of the Escherichia coli RNA polymerase alpha subunit amino-terminal domain. Science 1998, 281, 262-266.
-
(1998)
Science
, vol.281
, pp. 262-266
-
-
Zhang, G.1
Darst, S.A.2
-
8
-
-
77954439907
-
Structure of the Escherichia coli RNA polymerase alpha subunit C-terminal domain
-
Lara-Gonzalez, S.; Birktoft, J.J.; Lawson, C.L. Structure of the Escherichia coli RNA polymerase alpha subunit C-terminal domain. Acta Crystallogr. Sect. D Biol. Crystallogr. 2010, 66, 806-812.
-
(2010)
Acta Crystallogr. Sect. D Biol. Crystallogr
, vol.66
, pp. 806-812
-
-
Lara-Gonzalez, S.1
Birktoft, J.J.2
Lawson, C.L.3
-
9
-
-
0034717021
-
The structure and the characteristic DNA binding property of the C-terminal domain of the RNA polymerase alpha subunit from Thermus thermophilus
-
Wada, T.; Yamazaki, T.; Kyogoku, Y. The structure and the characteristic DNA binding property of the C-terminal domain of the RNA polymerase alpha subunit from Thermus thermophilus. J. Biol. Chem. 2000, 275, 16057-16063.
-
(2000)
J. Biol. Chem
, vol.275
, pp. 16057-16063
-
-
Wada, T.1
Yamazaki, T.2
Kyogoku, Y.3
-
10
-
-
84900395933
-
Helicobacter pylori RNA polymerase alpha-subunit C-terminal domain shows features unique to varepsilon-proteobacteria and binds NikR/DNA complexes
-
Borin, B.N.; Tang, W.; Krezel, A.M. Helicobacter pylori RNA polymerase alpha-subunit C-terminal domain shows features unique to varepsilon-proteobacteria and binds NikR/DNA complexes. Protein Sci. 2014, 23, 454-463.
-
(2014)
Protein Sci
, vol.23
, pp. 454-463
-
-
Borin, B.N.1
Tang, W.2
Krezel, A.M.3
-
11
-
-
77957921869
-
Complete structural model of Escherichia coli RNA polymerase from a hybrid approach
-
Opalka, N.; Brown, J.; Lane, W.J.; Twist, K.A.; Landick, R.; Asturias, F.J.; Darst, S.A. Complete structural model of Escherichia coli RNA polymerase from a hybrid approach. PLOS Biol. 2010, 8, e1000483.
-
(2010)
PLOS Biol
, vol.8
-
-
Opalka, N.1
Brown, J.2
Lane, W.J.3
Twist, K.A.4
Landick, R.5
Asturias, F.J.6
Darst, S.A.7
-
12
-
-
84885421523
-
Structure of the MTB CarD/RNAP beta-lobes complex reveals the molecular basis of interaction and presents a distinct DNA-binding domain for MTB CarD
-
Gulten, G.; Sacchettini, J.C. Structure of the MTB CarD/RNAP beta-lobes complex reveals the molecular basis of interaction and presents a distinct DNA-binding domain for MTB CarD. Structure 2013, 21, 1859-1869.
-
(2013)
Structure
, vol.21
, pp. 1859-1869
-
-
Gulten, G.1
Sacchettini, J.C.2
-
13
-
-
25144510935
-
Structure and function of lineage-specific sequence insertions in the bacterial RNA polymerase beta' subunit
-
Chlenov, M.; Masuda, S.; Murakami, K.S.; Nikiforov, V.; Darst, S.A.; Mustaev, A. Structure and function of lineage-specific sequence insertions in the bacterial RNA polymerase beta' subunit. J. Mol. Biol. 2005, 353, 138-154.
-
(2005)
J. Mol. Biol
, vol.353
, pp. 138-154
-
-
Chlenov, M.1
Masuda, S.2
Murakami, K.S.3
Nikiforov, V.4
Darst, S.A.5
Mustaev, A.6
-
14
-
-
53649093127
-
A full-length group 1 bacterial sigma factor adopts a compact structure incompatible with DNA binding
-
Schwartz, E.C.; Shekhtman, A.; Dutta, K.; Pratt, M.R.; Cowburn, D.; Darst, S.; Muir, T.W. A full-length group 1 bacterial sigma factor adopts a compact structure incompatible with DNA binding. Chem. Biol. 2008, 15, 1091-1103.
-
(2008)
Chem. Biol
, vol.15
, pp. 1091-1103
-
-
Schwartz, E.C.1
Shekhtman, A.2
Dutta, K.3
Pratt, M.R.4
Cowburn, D.5
Darst, S.6
Muir, T.W.7
-
15
-
-
0030271890
-
Crystal structure of a sigma70 subunit fragment from E. coli RNA polymerase
-
Malhotra, A.; Severinova, E.; Darst, S.A. Crystal structure of a sigma70 subunit fragment from E. coli RNA polymerase. Cell 1996, 87, 127-136.
-
(1996)
Cell
, vol.87
, pp. 127-136
-
-
Malhotra, A.1
Severinova, E.2
Darst, S.A.3
-
16
-
-
0036203066
-
Structure of the bacterial RNA polymerase promoter specificity sigma subunit
-
Campbell, E.A.; Muzzin, O.; Chlenov, M.; Sun, J.L.; Olson, C.A.; Weinman, O.; Trester-Zedlitz, M.L.; Darst, S.A. Structure of the bacterial RNA polymerase promoter specificity sigma subunit. Mol. Cell 2002, 9, 527-539.
-
(2002)
Mol. Cell
, vol.9
, pp. 527-539
-
-
Campbell, E.A.1
Muzzin, O.2
Chlenov, M.3
Sun, J.L.4
Olson, C.A.5
Weinman, O.6
Trester-Zedlitz, M.L.7
Darst, S.A.8
-
17
-
-
4143133402
-
T4 AsiA blocks DNA recognition by remodeling sigma70 region 4
-
Lambert, L.J.; Wei, Y.; Schirf, V.; Demeler, B.; Werner, M.H. T4 AsiA blocks DNA recognition by remodeling sigma70 region 4. EMBO J. 2004, 23, 2952-2962.
-
(2004)
EMBO J
, vol.23
, pp. 2952-2962
-
-
Lambert, L.J.1
Wei, Y.2
Schirf, V.3
Demeler, B.4
Werner, M.H.5
-
18
-
-
83255167029
-
Structural basis for promoter -10 element recognition by the bacterial RNA polymerase sigma subunit
-
Feklistov, A.; Darst, S.A. Structural basis for promoter -10 element recognition by the bacterial RNA polymerase sigma subunit. Cell 2011, 147, 1257-1269.
-
(2011)
Cell
, vol.147
, pp. 1257-1269
-
-
Feklistov, A.1
Darst, S.A.2
-
19
-
-
34248578701
-
Structural basis of DNA recognition by the alternative sigma-factor, sigma54
-
Doucleff, M.; Pelton, J.G.; Lee, P.S.; Nixon, B.T.; Wemmer, D.E. Structural basis of DNA recognition by the alternative sigma-factor, sigma54. J. Mol. Biol. 2007, 369, 1070-1078.
-
(2007)
J. Mol. Biol
, vol.369
, pp. 1070-1078
-
-
Doucleff, M.1
Pelton, J.G.2
Lee, P.S.3
Nixon, B.T.4
Wemmer, D.E.5
-
20
-
-
67349263052
-
Structure of the RNA polymerase core-binding domain of sigma54 reveals a likely conformational fracture point
-
Hong, E.; Doucleff, M.; Wemmer, D.E. Structure of the RNA polymerase core-binding domain of sigma54 reveals a likely conformational fracture point. J. Mol. Biol. 2009, 390, 70-82.
-
(2009)
J. Mol. Biol
, vol.390
, pp. 70-82
-
-
Hong, E.1
Doucleff, M.2
Wemmer, D.E.3
-
21
-
-
29244469944
-
The C-terminal RpoN domain of sigma54 forms an unpredicted helix-turn-helix motif similar to domains of sigma70
-
Doucleff, M.; Malak, L.T.; Pelton, J.G.; Wemmer, D.E. The C-terminal RpoN domain of sigma54 forms an unpredicted helix-turn-helix motif similar to domains of sigma70. J. Biol. Chem. 2005, 280, 41530-41536.
-
(2005)
J. Biol. Chem
, vol.280
, pp. 41530-41536
-
-
Doucleff, M.1
Malak, L.T.2
Pelton, J.G.3
Wemmer, D.E.4
-
22
-
-
33748625150
-
The structural basis for promoter -35 element recognition by the group IV sigma factors
-
Lane, W.J.; Darst, S.A. The structural basis for promoter -35 element recognition by the group IV sigma factors. PLoS Biol. 2006, 4, e269.
-
(2006)
PLoS Biol
, vol.4
-
-
Lane, W.J.1
Darst, S.A.2
-
23
-
-
33947506850
-
Structural and biophysical studies on two promoter recognition domains of the extra-cytoplasmic function sigma factor SigmaC from Mycobacterium tuberculosis
-
Thakur, K.G.; Joshi, A.M.; Gopal, B. Structural and biophysical studies on two promoter recognition domains of the extra-cytoplasmic function sigma factor SigmaC from Mycobacterium tuberculosis. J. Biol. Chem. 2007, 282, 4711-4718.
-
(2007)
J. Biol. Chem
, vol.282
, pp. 4711-4718
-
-
Thakur, K.G.1
Joshi, A.M.2
Gopal, B.3
-
24
-
-
84876404291
-
Mycobacterium tuberculosis RsdA provides a conformational rationale for selective regulation of sigma-factor activity by proteolysis
-
Jaiswal, R.K.; Prabha, T.S.; Manjeera, G.; Gopal, B. Mycobacterium tuberculosis RsdA provides a conformational rationale for selective regulation of sigma-factor activity by proteolysis. Nucleic Acids Res. 2013, 41, 3414-3423.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 3414-3423
-
-
Jaiswal, R.K.1
Prabha, T.S.2
Manjeera, G.3
Gopal, B.4
-
25
-
-
77951211788
-
Solution structure of the N-terminal domain of Bacillus subtilis delta subunit of RNA polymerase and its classification based on structural homologs
-
Motackova, V.; Sanderova, H.; Zidek, L.; Novacek, J.; Padrta, P.; Svenkova, A.; Korelusova, J.; Jonak, J.; Krasny, L.; Sklenar, V. Solution structure of the N-terminal domain of Bacillus subtilis delta subunit of RNA polymerase and its classification based on structural homologs. Proteins 2010, 78, 1807-1810.
-
(2010)
Proteins
, vol.78
, pp. 1807-1810
-
-
Motackova, V.1
Sanderova, H.2
Zidek, L.3
Novacek, J.4
Padrta, P.5
Svenkova, A.6
Korelusova, J.7
Jonak, J.8
Krasny, L.9
Sklenar, V.10
-
26
-
-
84905251244
-
X-ray vs. NMR structure of N-terminal domain of delta-subunit of RNA polymerase
-
Demo, G.; Papouskova, V.; Komarek, J.; Kaderavek, P.; Otrusinova, O.; Srb, P.; Rabatinova, A.; Krasny, L.; Zidek, L.; Sklenar, V.; et al. X-ray vs. NMR structure of N-terminal domain of delta-subunit of RNA polymerase. J. Struct. Biol. 2014, 187, 174-186.
-
(2014)
J. Struct. Biol
, vol.187
, pp. 174-186
-
-
Demo, G.1
Papouskova, V.2
Komarek, J.3
Kaderavek, P.4
Otrusinova, O.5
Srb, P.6
Rabatinova, A.7
Krasny, L.8
Zidek, L.9
Sklenar, V.10
-
27
-
-
84884703854
-
Structural study of the partially disordered full-length delta subunit of RNA polymerase from Bacillus subtilis
-
Papouskova, V.; Kaderavek, P.; Otrusinova, O.; Rabatinova, A.; H, S.S.; Novacek, J.; Krasny, L.; Sklenar, V.; Zidek, L. Structural study of the partially disordered full-length delta subunit of RNA polymerase from Bacillus subtilis. Chembiochem 2013, 14, 1772-1779.
-
(2013)
Chembiochem
, vol.14
, pp. 1772-1779
-
-
Papouskova, V.1
Kaderavek, P.2
Otrusinova, O.3
Rabatinova, A.4
H, S.S.5
Novacek, J.6
Krasny, L.7
Sklenar, V.8
Zidek, L.9
-
28
-
-
84907088279
-
Epsilon, a new subunit of RNA polymerase found in gram-positive bacteria
-
Keller, A.N.; Yang, X.; Wiedermannova, J.; Delumeau, O.; Krasny, L.; Lewis, P.J. Epsilon, a new subunit of RNA polymerase found in gram-positive bacteria. J. Bacteriol. 2014, 196, 3622-3632.
-
(2014)
J. Bacteriol
, vol.196
, pp. 3622-3632
-
-
Keller, A.N.1
Yang, X.2
Wiedermannova, J.3
Delumeau, O.4
Krasny, L.5
Lewis, P.J.6
-
29
-
-
0033578701
-
Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 Å resolution
-
Zhang, G.; Campbell, E.A.; Minakhin, L.; Richter, C.; Severinov, K.; Darst, S.A. Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 Å resolution. Cell 1999, 98, 811-824.
-
(1999)
Cell
, vol.98
, pp. 811-824
-
-
Zhang, G.1
Campbell, E.A.2
Minakhin, L.3
Richter, C.4
Severinov, K.5
Darst, S.A.6
-
30
-
-
0035970037
-
Bacterial RNA polymerase subunit omega and eukaryotic RNA polymerase subunit Rpb6 are sequence, structural, and functional homologs and promote RNA polymerase assembly
-
Minakhin, L.; Bhagat, S.; Brunning, A.; Campbell, E.A.; Darst, S.A.; Ebright, R.H.; Severinov, K. Bacterial RNA polymerase subunit omega and eukaryotic RNA polymerase subunit Rpb6 are sequence, structural, and functional homologs and promote RNA polymerase assembly. Proc. Natl. Acad. Sci. USA 2001, 98, 892-897.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 892-897
-
-
Minakhin, L.1
Bhagat, S.2
Brunning, A.3
Campbell, E.A.4
Darst, S.A.5
Ebright, R.H.6
Severinov, K.7
-
31
-
-
33646177461
-
Recombinant Thermus aquaticus RNA polymerase for structural studies
-
Kuznedelov, K.; Lamour, V.; Patikoglou, G.; Chlenov, M.; Darst, S.A.; Severinov, K. Recombinant Thermus aquaticus RNA polymerase for structural studies. J. Mol. Biol. 2006, 359, 110-121.
-
(2006)
J. Mol. Biol
, vol.359
, pp. 110-121
-
-
Kuznedelov, K.1
Lamour, V.2
Patikoglou, G.3
Chlenov, M.4
Darst, S.A.5
Severinov, K.6
-
32
-
-
0037123659
-
Structural basis of transcription initiation: RNA polymerase holoenzyme at 4 Å resolution
-
Murakami, K.S.; Masuda, S.; Darst, S.A. Structural basis of transcription initiation: RNA polymerase holoenzyme at 4 Å resolution. Science 2002, 296, 1280-1284.
-
(2002)
Science
, vol.296
, pp. 1280-1284
-
-
Murakami, K.S.1
Masuda, S.2
Darst, S.A.3
-
33
-
-
0037071844
-
Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 Å resolution
-
Vassylyev, D.G.; Sekine, S.; Laptenko, O.; Lee, J.; Vassylyeva, M.N.; Borukhov, S.; Yokoyama, S. Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 Å resolution. Nature 2002, 417, 712-719.
-
(2002)
Nature
, vol.417
, pp. 712-719
-
-
Vassylyev, D.G.1
Sekine, S.2
Laptenko, O.3
Lee, J.4
Vassylyeva, M.N.5
Borukhov, S.6
Yokoyama, S.7
-
34
-
-
23944521364
-
Inhibition of bacterial RNA polymerase by streptolydigin: Stabilization of a straight-bridge-helix active-center conformation
-
Tuske, S.; Sarafianos, S.G.; Wang, X.; Hudson, B.; Sineva, E.; Mukhopadhyay, J.; Birktoft, J.J.; Leroy, O.; Ismail, S.; Clark, A.D., Jr.; et al. Inhibition of bacterial RNA polymerase by streptolydigin: Stabilization of a straight-bridge-helix active-center conformation. Cell 2005, 122, 541-552.
-
(2005)
Cell
, vol.122
, pp. 541-552
-
-
Tuske, S.1
Sarafianos, S.G.2
Wang, X.3
Hudson, B.4
Sineva, E.5
Mukhopadhyay, J.6
Birktoft, J.J.7
Leroy, O.8
Ismail, S.9
Clark, A.D.10
-
35
-
-
84875972911
-
X-ray crystal structure of Escherichia coli RNA polymerase sigma70 holoenzyme
-
Murakami, K.S. X-ray crystal structure of Escherichia coli RNA polymerase sigma70 holoenzyme. J. Biol. Chem. 2013, 288, 9126-9134.
-
(2013)
J. Biol. Chem
, vol.288
, pp. 9126-9134
-
-
Murakami, K.S.1
-
36
-
-
84889685182
-
Phage T7 gp2 inhibition of Escherichia coli RNA polymerase involves misappropriation of sigma70 domain 1.1
-
Bae, B.; Davis, E.; Brown, D.; Campbell, E.A.; Wigneshweraraj, S.; Darst, S.A. Phage T7 gp2 inhibition of Escherichia coli RNA polymerase involves misappropriation of sigma70 domain 1.1. Proc. Natl. Acad. Sci. USA 2013, 110, 19772-19777.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 19772-19777
-
-
Bae, B.1
Davis, E.2
Brown, D.3
Campbell, E.A.4
Wigneshweraraj, S.5
Darst, S.A.6
-
37
-
-
84899856701
-
Transcription inhibition by the depsipeptide antibiotic Salinamide A
-
Degen, D.; Feng, Y.; Zhang, Y.; Ebright, K.Y.; Ebright, Y.W.; Gigliotti, M.; Vahedian-Movahed, H.; Mandal, S.; Talaue, M.; Connell, N.; et al. Transcription inhibition by the depsipeptide antibiotic Salinamide A. eLife 2014, 3, e02451.
-
(2014)
eLife
, vol.3
-
-
Degen, D.1
Feng, Y.2
Zhang, Y.3
Ebright, K.Y.4
Ebright, Y.W.5
Gigliotti, M.6
Vahedian-Movahed, H.7
Mandal, S.8
Talaue, M.9
Connell, N.10
-
38
-
-
0037123602
-
Structural basis of transcription initiation: An RNA polymerase holoenzyme-DNA complex
-
Murakami, K.S.; Masuda, S.; Campbell, E.A.; Muzzin, O.; Darst, S.A. Structural basis of transcription initiation: An RNA polymerase holoenzyme-DNA complex. Science 2002, 296, 1285-1290.
-
(2002)
Science
, vol.296
, pp. 1285-1290
-
-
Murakami, K.S.1
Masuda, S.2
Campbell, E.A.3
Muzzin, O.4
Darst, S.A.5
-
39
-
-
84869862306
-
Structural basis of transcription initiation
-
Zhang, Y.; Feng, Y.; Chatterjee, S.; Tuske, S.; Ho, M.X.; Arnold, E.; Ebright, R.H. Structural basis of transcription initiation. Science 2012, 338, 1076-1080.
-
(2012)
Science
, vol.338
, pp. 1076-1080
-
-
Zhang, Y.1
Feng, Y.2
Chatterjee, S.3
Tuske, S.4
Ho, M.X.5
Arnold, E.6
Ebright, R.H.7
-
40
-
-
84906861221
-
Structural basis of transcription initiation by bacterial RNA polymerase holoenzyme
-
Basu, R.S.; Warner, B.A.; Molodtsov, V.; Pupov, D.; Esyunina, D.; Fernandez-Tornero, C.; Kulbachinskiy, A.; Murakami, K.S. Structural basis of transcription initiation by bacterial RNA polymerase holoenzyme. J. Biol. Chem. 2014, 289, 24549-24559.
-
(2014)
J. Biol. Chem
, vol.289
, pp. 24549-24559
-
-
Basu, R.S.1
Warner, B.A.2
Molodtsov, V.3
Pupov, D.4
Esyunina, D.5
Fernandez-Tornero, C.6
Kulbachinskiy, A.7
Murakami, K.S.8
-
41
-
-
84899653185
-
GE23077 binds to the RNA polymerase "I" and "I+1" sites and prevents the binding of initiating nucleotides
-
Zhang, Y.; Degen, D.; Ho, M.X.; Sineva, E.; Ebright, K.Y.; Ebright, Y.W.; Mekler, V.; Vahedian-Movahed, H.; Feng, Y.; Yin, R.; et al. GE23077 binds to the RNA polymerase "I" and "I+1" sites and prevents the binding of initiating nucleotides. eLife 2014, 3, e02450.
-
(2014)
eLife
, vol.3
-
-
Zhang, Y.1
Degen, D.2
Ho, M.X.3
Sineva, E.4
Ebright, K.Y.5
Ebright, Y.W.6
Mekler, V.7
Vahedian-Movahed, H.8
Feng, Y.9
Yin, R.10
-
42
-
-
34447513771
-
Structural basis for substrate loading in bacterial RNA polymerase
-
Vassylyev, D.G.; Vassylyeva, M.N.; Zhang, J.; Palangat, M.; Artsimovitch, I.; Landick, R. Structural basis for substrate loading in bacterial RNA polymerase. Nature 2007, 448, 163-168.
-
(2007)
Nature
, vol.448
, pp. 163-168
-
-
Vassylyev, D.G.1
Vassylyeva, M.N.2
Zhang, J.3
Palangat, M.4
Artsimovitch, I.5
Landick, R.6
-
43
-
-
34447499995
-
Structural basis for transcription elongation by bacterial RNA polymerase
-
Vassylyev, D.G.; Vassylyeva, M.N.; Perederina, A.; Tahirov, T.H.; Artsimovitch, I. Structural basis for transcription elongation by bacterial RNA polymerase. Nature 2007, 448, 157-162.
-
(2007)
Nature
, vol.448
, pp. 157-162
-
-
Vassylyev, D.G.1
Vassylyeva, M.N.2
Perederina, A.3
Tahirov, T.H.4
Artsimovitch, I.5
-
44
-
-
84873323216
-
Structural basis of transcriptional pausing in bacteria
-
Weixlbaumer, A.; Leon, K.; Landick, R.; Darst, S.A. Structural basis of transcriptional pausing in bacteria. Cell 2013, 152, 431-441.
-
(2013)
Cell
, vol.152
, pp. 431-441
-
-
Weixlbaumer, A.1
Leon, K.2
Landick, R.3
Darst, S.A.4
-
45
-
-
84924916862
-
The ratcheted and ratchetable structural states of RNA polymerase underlie multiple transcriptional functions
-
Sekine, S.; Murayama, Y.; Svetlov, V.; Nudler, E.; Yokoyama, S. The ratcheted and ratchetable structural states of RNA polymerase underlie multiple transcriptional functions. Mol. Cell 2015, 57, 408-421.
-
(2015)
Mol. Cell
, vol.57
, pp. 408-421
-
-
Sekine, S.1
Murayama, Y.2
Svetlov, V.3
Nudler, E.4
Yokoyama, S.5
-
46
-
-
0033579380
-
Structure of a transcribing T7 RNA polymerase initiation complex
-
Cheetham, G.M.; Steitz, T.A. Structure of a transcribing T7 RNA polymerase initiation complex. Science 1999, 286, 2305-2309.
-
(1999)
Science
, vol.286
, pp. 2305-2309
-
-
Cheetham, G.M.1
Steitz, T.A.2
-
47
-
-
0027184481
-
A general two-metal-ion mechanism for catalytic RNA
-
Steitz, T.A.; Steitz, J.A. A general two-metal-ion mechanism for catalytic RNA. Proc. Natl. Acad. Sci. USA 1993, 90, 6498-6502.
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 6498-6502
-
-
Steitz, T.A.1
Steitz, J.A.2
-
48
-
-
84886947664
-
Crystal structure of the 14-subunit RNA polymerase I
-
Fernandez-Tornero, C.; Moreno-Morcillo, M.; Rashid, U.J.; Taylor, N.M.; Ruiz, F.M.; Gruene, T.; Legrand, P.; Steuerwald, U.; Muller, C.W. Crystal structure of the 14-subunit RNA polymerase I. Nature 2013, 502, 644-649.
-
(2013)
Nature
, vol.502
, pp. 644-649
-
-
Fernandez-Tornero, C.1
Moreno-Morcillo, M.2
Rashid, U.J.3
Taylor, N.M.4
Ruiz, F.M.5
Gruene, T.6
Legrand, P.7
Steuerwald, U.8
Muller, C.W.9
-
49
-
-
84886948058
-
RNA polymerase I structure and transcription regulation
-
Engel, C.; Sainsbury, S.; Cheung, A.C.; Kostrewa, D.; Cramer, P. RNA polymerase I structure and transcription regulation. Nature 2013, 502, 650-655.
-
(2013)
Nature
, vol.502
, pp. 650-655
-
-
Engel, C.1
Sainsbury, S.2
Cheung, A.C.3
Kostrewa, D.4
Cramer, P.5
-
50
-
-
0035827346
-
Structural basis of transcription: RNA polymerase II at 2.8 Å resolution
-
Cramer, P.; Bushnell, D.A.; Kornberg, R.D. Structural basis of transcription: RNA polymerase II at 2.8 Å resolution. Science 2001, 292, 1863-1876.
-
(2001)
Science
, vol.292
, pp. 1863-1876
-
-
Cramer, P.1
Bushnell, D.A.2
Kornberg, R.D.3
-
51
-
-
39149142997
-
The X-ray crystal structure of RNA polymerase from archaea
-
Hirata, A.; Klein, B.J.; Murakami, K.S. The X-ray crystal structure of RNA polymerase from archaea. Nature 2008, 451, 851-854.
-
(2008)
Nature
, vol.451
, pp. 851-854
-
-
Hirata, A.1
Klein, B.J.2
Murakami, K.S.3
-
52
-
-
84901677567
-
Transcription elongation: Heterogeneous tracking of RNA polymerase and its biological implications
-
Imashimizu, M.; Shimamoto, N.; Oshima, T.; Kashlev, M. Transcription elongation: Heterogeneous tracking of RNA polymerase and its biological implications. Transcription 2014, 5, e28285.
-
(2014)
Transcription
, vol.5
-
-
Imashimizu, M.1
Shimamoto, N.2
Oshima, T.3
Kashlev, M.4
-
53
-
-
84923281143
-
Structural basis for transcription reactivation by RapA
-
Liu, B.; Zuo, Y.; Steitz, T.A. Structural basis for transcription reactivation by RapA. Proc. Natl. Acad. Sci. USA 2015, 112, 2006-2010.
-
(2015)
Proc. Natl. Acad. Sci. USA
, vol.112
, pp. 2006-2010
-
-
Liu, B.1
Zuo, Y.2
Steitz, T.A.3
-
54
-
-
1842766125
-
Crystal structure of the flagellar sigma/anti-sigma complex sigma28/flgm reveals an intact sigma factor in an inactive conformation
-
Sorenson, M.K.; Ray, S.S.; Darst, S.A. Crystal structure of the flagellar sigma/anti-sigma complex sigma28/flgm reveals an intact sigma factor in an inactive conformation. Mol. Cell 2004, 14, 127-138.
-
(2004)
Mol. Cell
, vol.14
, pp. 127-138
-
-
Sorenson, M.K.1
Ray, S.S.2
Darst, S.A.3
-
55
-
-
34548252292
-
A conserved structural module regulates transcriptional responses to diverse stress signals in bacteria
-
Campbell, E.A.; Greenwell, R.; Anthony, J.R.; Wang, S.; Lim, L.; Das, K.; Sofia, H.J.; Donohue, T.J.; Darst, S.A. A conserved structural module regulates transcriptional responses to diverse stress signals in bacteria. Mol. Cell 2007, 27, 793-805.
-
(2007)
Mol. Cell
, vol.27
, pp. 793-805
-
-
Campbell, E.A.1
Greenwell, R.2
Anthony, J.R.3
Wang, S.4
Lim, L.5
Das, K.6
Sofia, H.J.7
Donohue, T.J.8
Darst, S.A.9
-
56
-
-
0012837562
-
Crystal structure of Escherichia coli sigmaE with the cytoplasmic domain of its anti-sigma RseA
-
Campbell, E.A.; Tupy, J.L.; Gruber, T.M.; Wang, S.; Sharp, M.M.; Gross, C.A.; Darst, S.A. Crystal structure of Escherichia coli sigmaE with the cytoplasmic domain of its anti-sigma RseA. Mol. Cell 2003, 11, 1067-1078.
-
(2003)
Mol. Cell
, vol.11
, pp. 1067-1078
-
-
Campbell, E.A.1
Tupy, J.L.2
Gruber, T.M.3
Wang, S.4
Sharp, M.M.5
Gross, C.A.6
Darst, S.A.7
-
57
-
-
84898768441
-
Structural basis for the redox sensitivity of the Mycobacterium tuberculosis SigK-RskA sigma-anti-sigma complex
-
Shukla, J.; Gupta, R.; Thakur, K.G.; Gokhale, R.; Gopal, B. Structural basis for the redox sensitivity of the Mycobacterium tuberculosis SigK-RskA sigma-anti-sigma complex. Acta Crystallogr. Sect. D Biol. Crystallogr. 2014, 70, 1026-1036.
-
(2014)
Acta Crystallogr. Sect. D Biol. Crystallogr
, vol.70
, pp. 1026-1036
-
-
Shukla, J.1
Gupta, R.2
Thakur, K.G.3
Gokhale, R.4
Gopal, B.5
-
58
-
-
0037155726
-
Crystal structure of the Bacillus stearothermophilus anti-sigma factor SpoIIAB with the sporulation sigma factor sigmaF
-
Campbell, E.A.; Masuda, S.; Sun, J.L.; Muzzin, O.; Olson, C.A.; Wang, S.; Darst, S.A. Crystal structure of the Bacillus stearothermophilus anti-sigma factor SpoIIAB with the sporulation sigma factor sigmaF. Cell 2002, 108, 795-807.
-
(2002)
Cell
, vol.108
, pp. 795-807
-
-
Campbell, E.A.1
Masuda, S.2
Sun, J.L.3
Muzzin, O.4
Olson, C.A.5
Wang, S.6
Darst, S.A.7
-
59
-
-
34548153206
-
Crystal structure of the Escherichia coli regulator of sigma70, Rsd, in complex with sigma70 domain 4
-
Patikoglou, G.A.; Westblade, L.F.; Campbell, E.A.; Lamour, V.; Lane, W.J.; Darst, S.A. Crystal structure of the Escherichia coli regulator of sigma70, Rsd, in complex with sigma70 domain 4. J. Mol. Biol. 2007, 372, 649-659.
-
(2007)
J. Mol. Biol
, vol.372
, pp. 649-659
-
-
Patikoglou, G.A.1
Westblade, L.F.2
Campbell, E.A.3
Lamour, V.4
Lane, W.J.5
Darst, S.A.6
-
60
-
-
77950517981
-
Structural and biochemical bases for the redox sensitivity of Mycobacterium tuberculosis RslA
-
Thakur, K.G.; Praveena, T.; Gopal, B. Structural and biochemical bases for the redox sensitivity of Mycobacterium tuberculosis RslA. J. Mol. Biol. 2010, 397, 1199-1208.
-
(2010)
J. Mol. Biol
, vol.397
, pp. 1199-1208
-
-
Thakur, K.G.1
Praveena, T.2
Gopal, B.3
-
61
-
-
0037200079
-
Structural basis of transcription activation: The CAP-alpha CTD-DNA complex
-
Benoff, B.; Yang, H.; Lawson, C.L.; Parkinson, G.; Liu, J.; Blatter, E.; Ebright, Y.W.; Berman, H.M.; Ebright, R.H. Structural basis of transcription activation: The CAP-alpha CTD-DNA complex. Science 2002, 297, 1562-1566.
-
(2002)
Science
, vol.297
, pp. 1562-1566
-
-
Benoff, B.1
Yang, H.2
Lawson, C.L.3
Parkinson, G.4
Liu, J.5
Blatter, E.6
Ebright, Y.W.7
Berman, H.M.8
Ebright, R.H.9
-
62
-
-
27644512305
-
Crystal structure of the Bacillus subtilis anti-alpha, global transcriptional regulator, Spx, in complex with the alpha C-terminal domain of RNA polymerase
-
Newberry, K.J.; Nakano, S.; Zuber, P.; Brennan, R.G. Crystal structure of the Bacillus subtilis anti-alpha, global transcriptional regulator, Spx, in complex with the alpha C-terminal domain of RNA polymerase. Proc. Natl. Acad. Sci. USA 2005, 102, 15839-15844.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 15839-15844
-
-
Newberry, K.J.1
Nakano, S.2
Zuber, P.3
Brennan, R.G.4
-
63
-
-
70349456641
-
Crystal structure of the in vivo-assembled Bacillus subtilis spx/RNA polymerase alpha subunit C-terminal domain complex
-
Lamour, V.; Westblade, L.F.; Campbell, E.A.; Darst, S.A. Crystal structure of the in vivo-assembled Bacillus subtilis spx/RNA polymerase alpha subunit C-terminal domain complex. J. Struct. Biol. 2009, 168, 352-356.
-
(2009)
J. Struct. Biol
, vol.168
, pp. 352-356
-
-
Lamour, V.1
Westblade, L.F.2
Campbell, E.A.3
Darst, S.A.4
-
64
-
-
77952518664
-
Promoter recognition by a complex of Spx and the C-terminal domain of the RNA polymerase alpha subunit
-
Nakano, M.M.; Lin, A.; Zuber, C.S.; Newberry, K.J.; Brennan, R.G.; Zuber, P. Promoter recognition by a complex of Spx and the C-terminal domain of the RNA polymerase alpha subunit. PLOS ONE 2010, 5, e8664.
-
(2010)
PLOS ONE
, vol.5
-
-
Nakano, M.M.1
Lin, A.2
Zuber, C.S.3
Newberry, K.J.4
Brennan, R.G.5
Zuber, P.6
-
65
-
-
78650415624
-
Structural basis for the bacterial transcription-repair coupling factor/RNA polymerase interaction
-
Westblade, L.F.; Campbell, E.A.; Pukhrambam, C.; Padovan, J.C.; Nickels, B.E.; Lamour, V.; Darst, S.A. Structural basis for the bacterial transcription-repair coupling factor/RNA polymerase interaction. Nucleic Acids Res. 2010, 38, 8357-8369.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 8357-8369
-
-
Westblade, L.F.1
Campbell, E.A.2
Pukhrambam, C.3
Padovan, J.C.4
Nickels, B.E.5
Lamour, V.6
Darst, S.A.7
-
66
-
-
1642441938
-
Structure of a ternary transcription activation complex
-
Jain, D.; Nickels, B.E.; Sun, L.; Hochschild, A.; Darst, S.A. Structure of a ternary transcription activation complex. Mol. Cell 2004, 13, 45-53.
-
(2004)
Mol. Cell
, vol.13
, pp. 45-53
-
-
Jain, D.1
Nickels, B.E.2
Sun, L.3
Hochschild, A.4
Darst, S.A.5
-
67
-
-
80052774659
-
The structure of a transcription activation subcomplex reveals how sigma70 is recruited to PhoB promoters
-
Blanco, A.G.; Canals, A.; Bernues, J.; Sola, M.; Coll, M. The structure of a transcription activation subcomplex reveals how sigma70 is recruited to PhoB promoters. EMBO J. 2011, 30, 3776-3785.
-
(2011)
EMBO J
, vol.30
, pp. 3776-3785
-
-
Blanco, A.G.1
Canals, A.2
Bernues, J.3
Sola, M.4
Coll, M.5
-
68
-
-
73949094255
-
Three-dimensional EM structure of an intact activator-dependent transcription initiation complex
-
Hudson, B.P.; Quispe, J.; Lara-Gonzalez, S.; Kim, Y.; Berman, H.M.; Arnold, E.; Ebright, R.H.; Lawson, C.L. Three-dimensional EM structure of an intact activator-dependent transcription initiation complex. Proc. Natl. Acad. Sci. USA 2009, 106, 19830-19835.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 19830-19835
-
-
Hudson, B.P.1
Quispe, J.2
Lara-Gonzalez, S.3
Kim, Y.4
Berman, H.M.5
Arnold, E.6
Ebright, R.H.7
Lawson, C.L.8
-
69
-
-
78650310283
-
Crystal structure of bacterial RNA polymerase bound with a transcription inhibitor protein
-
Tagami, S.; Sekine, S.; Kumarevel, T.; Hino, N.; Murayama, Y.; Kamegamori, S.; Yamamoto, M.; Sakamoto, K.; Yokoyama, S. Crystal structure of bacterial RNA polymerase bound with a transcription inhibitor protein. Nature 2010, 468, 978-982.
-
(2010)
Nature
, vol.468
, pp. 978-982
-
-
Tagami, S.1
Sekine, S.2
Kumarevel, T.3
Hino, N.4
Murayama, Y.5
Kamegamori, S.6
Yamamoto, M.7
Sakamoto, K.8
Yokoyama, S.9
-
70
-
-
84866290790
-
Structural and mechanistic basis for the inhibition of Escherichia coli RNA polymerase by T7 gp2
-
James, E.; Liu, M.; Sheppard, C.; Mekler, V.; Camara, B.; Liu, B.; Simpson, P.; Cota, E.; Severinov, K.; Matthews, S.; et al. Structural and mechanistic basis for the inhibition of Escherichia coli RNA polymerase by T7 gp2. Mol. Cell 2012, 47, 755-766.
-
(2012)
Mol. Cell
, vol.47
, pp. 755-766
-
-
James, E.1
Liu, M.2
Sheppard, C.3
Mekler, V.4
Camara, B.5
Liu, B.6
Simpson, P.7
Cota, E.8
Severinov, K.9
Matthews, S.10
-
71
-
-
84055187722
-
Crystal structure of the bacteriophage T4 late-transcription coactivator gp33 with the beta-subunit flap domain of Escherichia coli RNA polymerase
-
Twist, K.A.; Campbell, E.A.; Deighan, P.; Nechaev, S.; Jain, V.; Geiduschek, E.P.; Hochschild, A.; Darst, S.A. Crystal structure of the bacteriophage T4 late-transcription coactivator gp33 with the beta-subunit flap domain of Escherichia coli RNA polymerase. Proc. Natl. Acad. Sci. USA 2011, 108, 19961-19966.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 19961-19966
-
-
Twist, K.A.1
Campbell, E.A.2
Deighan, P.3
Nechaev, S.4
Jain, V.5
Geiduschek, E.P.6
Hochschild, A.7
Darst, S.A.8
-
72
-
-
84896883457
-
Structural basis for promoter specificity switching of RNA polymerase by a phage factor
-
Tagami, S.; Sekine, S.; Minakhin, L.; Esyunina, D.; Akasaka, R.; Shirouzu, M.; Kulbachinskiy, A.; Severinov, K.; Yokoyama, S. Structural basis for promoter specificity switching of RNA polymerase by a phage factor. Genes Dev. 2014, 28, 521-531.
-
(2014)
Genes Dev
, vol.28
, pp. 521-531
-
-
Tagami, S.1
Sekine, S.2
Minakhin, L.3
Esyunina, D.4
Akasaka, R.5
Shirouzu, M.6
Kulbachinskiy, A.7
Severinov, K.8
Yokoyama, S.9
-
73
-
-
84870027829
-
Promoter-specific transcription inhibition in Staphylococcus aureus by a phage protein
-
Osmundson, J.; Montero-Diez, C.; Westblade, L.F.; Hochschild, A.; Darst, S.A. Promoter-specific transcription inhibition in Staphylococcus aureus by a phage protein. Cell 2012, 151, 1005-1016.
-
(2012)
Cell
, vol.151
, pp. 1005-1016
-
-
Osmundson, J.1
Montero-Diez, C.2
Westblade, L.F.3
Hochschild, A.4
Darst, S.A.5
-
74
-
-
84880248053
-
Differential regulation by ppgpp versus ppGpp in Escherichia coli
-
Mechold, U.; Potrykus, K.; Murphy, H.; Murakami, K.S.; Cashel, M. Differential regulation by ppgpp versus ppGpp in Escherichia coli. Nucleic Acids Res. 2013, 41, 6175-6189.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 6175-6189
-
-
Mechold, U.1
Potrykus, K.2
Murphy, H.3
Murakami, K.S.4
Cashel, M.5
-
75
-
-
84887143299
-
The mechanism of E. coli RNA polymerase regulation by ppGpp is suggested by the structure of their complex
-
Zuo, Y.; Wang, Y.; Steitz, T.A. The mechanism of E. coli RNA polymerase regulation by ppGpp is suggested by the structure of their complex. Mol. Cell 2013, 50, 430-436.
-
(2013)
Mol. Cell
, vol.50
, pp. 430-436
-
-
Zuo, Y.1
Wang, Y.2
Steitz, T.A.3
-
76
-
-
2042475439
-
Structural basis for transcription regulation by alarmone ppGpp
-
Artsimovitch, I.; Patlan, V.; Sekine, S.; Vassylyeva, M.N.; Hosaka, T.; Ochi, K.; Yokoyama, S.; Vassylyev, D.G. Structural basis for transcription regulation by alarmone ppGpp. Cell 2004, 117, 299-310.
-
(2004)
Cell
, vol.117
, pp. 299-310
-
-
Artsimovitch, I.1
Patlan, V.2
Sekine, S.3
Vassylyeva, M.N.4
Hosaka, T.5
Ochi, K.6
Yokoyama, S.7
Vassylyev, D.G.8
-
77
-
-
40049090539
-
Still looking for the magic spot: The crystallographically defined binding site for ppGpp on RNA polymerase is unlikely to be responsible for rRNA transcription regulation
-
Vrentas, C.E.; Gaal, T.; Berkmen, M.B.; Rutherford, S.T.; Haugen, S.P.; Vassylyev, D.G.; Ross, W.; Gourse, R.L. Still looking for the magic spot: The crystallographically defined binding site for ppGpp on RNA polymerase is unlikely to be responsible for rRNA transcription regulation. J. Mol. Biol. 2008, 377, 551-564.
-
(2008)
J. Mol. Biol
, vol.377
, pp. 551-564
-
-
Vrentas, C.E.1
Gaal, T.2
Berkmen, M.B.3
Rutherford, S.T.4
Haugen, S.P.5
Vassylyev, D.G.6
Ross, W.7
Gourse, R.L.8
-
78
-
-
54249116230
-
Genetic regulatory mechanisms in the synthesis of proteins
-
Jacob, F.; Monod, J. Genetic regulatory mechanisms in the synthesis of proteins. J. Mol. Biol. 1961, 3, 318-356.
-
(1961)
J. Mol. Biol
, vol.3
, pp. 318-356
-
-
Jacob, F.1
Monod, J.2
-
79
-
-
0025778597
-
Bipartite functional map of the E. coli RNA polymerase alpha subunit: Involvement of the C-terminal region in transcription activation by cAMP-CRP
-
Igarashi, K.; Ishihama, A. Bipartite functional map of the E. coli RNA polymerase alpha subunit: Involvement of the C-terminal region in transcription activation by cAMP-CRP. Cell 1991, 65, 1015-1022.
-
(1991)
Cell
, vol.65
, pp. 1015-1022
-
-
Igarashi, K.1
Ishihama, A.2
-
80
-
-
0035937403
-
Structural mechanism for rifampicin inhibition of bacterial RNA polymerase
-
Campbell, E.A.; Korzheva, N.; Mustaev, A.; Murakami, K.; Nair, S.; Goldfarb, A.; Darst, S.A. Structural mechanism for rifampicin inhibition of bacterial RNA polymerase. Cell 2001, 104, 901-912.
-
(2001)
Cell
, vol.104
, pp. 901-912
-
-
Campbell, E.A.1
Korzheva, N.2
Mustaev, A.3
Murakami, K.4
Nair, S.5
Goldfarb, A.6
Darst, S.A.7
-
81
-
-
84879063733
-
X-ray crystal structures of the Escherichia coli RNA polymerase in complex with benzoxazinorifamycins
-
Molodtsov, V.; Nawarathne, I.N.; Scharf, N.T.; Kirchhoff, P.D.; Showalter, H.D.; Garcia, G.A.; Murakami, K.S. X-ray crystal structures of the Escherichia coli RNA polymerase in complex with benzoxazinorifamycins. J. Med. Chem. 2013, 56, 4758-4763.
-
(2013)
J. Med. Chem
, vol.56
, pp. 4758-4763
-
-
Molodtsov, V.1
Nawarathne, I.N.2
Scharf, N.T.3
Kirchhoff, P.D.4
Showalter, H.D.5
Garcia, G.A.6
Murakami, K.S.7
-
82
-
-
15444374664
-
Structural, functional, and genetic analysis of sorangicin inhibition of bacterial RNA polymerase
-
Campbell, E.A.; Pavlova, O.; Zenkin, N.; Leon, F.; Irschik, H.; Jansen, R.; Severinov, K.; Darst, S.A. Structural, functional, and genetic analysis of sorangicin inhibition of bacterial RNA polymerase. EMBO J. 2005, 24, 674-682.
-
(2005)
EMBO J
, vol.24
, pp. 674-682
-
-
Campbell, E.A.1
Pavlova, O.2
Zenkin, N.3
Leon, F.4
Irschik, H.5
Jansen, R.6
Severinov, K.7
Darst, S.A.8
-
83
-
-
23744489566
-
Allosteric modulation of the RNA polymerase catalytic reaction is an essential component of transcription control by rifamycins
-
Artsimovitch, I.; Vassylyeva, M.N.; Svetlov, D.; Svetlov, V.; Perederina, A.; Igarashi, N.; Matsugaki, N.; Wakatsuki, S.; Tahirov, T.H.; Vassylyev, D.G. Allosteric modulation of the RNA polymerase catalytic reaction is an essential component of transcription control by rifamycins. Cell 2005, 122, 351-363.
-
(2005)
Cell
, vol.122
, pp. 351-363
-
-
Artsimovitch, I.1
Vassylyeva, M.N.2
Svetlov, D.3
Svetlov, V.4
Perederina, A.5
Igarashi, N.6
Matsugaki, N.7
Wakatsuki, S.8
Tahirov, T.H.9
Vassylyev, D.G.10
-
84
-
-
24044497229
-
Structural basis of transcription inhibition by antibiotic streptolydigin
-
Temiakov, D.; Zenkin, N.; Vassylyeva, M.N.; Perederina, A.; Tahirov, T.H.; Kashkina, E.; Savkina, M.; Zorov, S.; Nikiforov, V.; Igarashi, N.; et al. Structural basis of transcription inhibition by antibiotic streptolydigin. Mol. Cell 2005, 19, 655-666.
-
(2005)
Mol. Cell
, vol.19
, pp. 655-666
-
-
Temiakov, D.1
Zenkin, N.2
Vassylyeva, M.N.3
Perederina, A.4
Tahirov, T.H.5
Kashkina, E.6
Savkina, M.7
Zorov, S.8
Nikiforov, V.9
Igarashi, N.10
-
85
-
-
53549085430
-
The RNA polymerase "switch region" is a target for inhibitors
-
Mukhopadhyay, J.; Das, K.; Ismail, S.; Koppstein, D.; Jang, M.; Hudson, B.; Sarafianos, S.; Tuske, S.; Patel, J.; Jansen, R.; et al. The RNA polymerase "switch region" is a target for inhibitors. Cell 2008, 135, 295-307.
-
(2008)
Cell
, vol.135
, pp. 295-307
-
-
Mukhopadhyay, J.1
Das, K.2
Ismail, S.3
Koppstein, D.4
Jang, M.5
Hudson, B.6
Sarafianos, S.7
Tuske, S.8
Patel, J.9
Jansen, R.10
-
86
-
-
58249100113
-
Transcription inactivation through local refolding of the RNA polymerase structure
-
Belogurov, G.A.; Vassylyeva, M.N.; Sevostyanova, A.; Appleman, J.R.; Xiang, A.X.; Lira, R.; Webber, S.E.; Klyuyev, S.; Nudler, E.; Artsimovitch, I.; et al. Transcription inactivation through local refolding of the RNA polymerase structure. Nature 2009, 457, 332-335.
-
(2009)
Nature
, vol.457
, pp. 332-335
-
-
Belogurov, G.A.1
Vassylyeva, M.N.2
Sevostyanova, A.3
Appleman, J.R.4
Xiang, A.X.5
Lira, R.6
Webber, S.E.7
Klyuyev, S.8
Nudler, E.9
Artsimovitch, I.10
-
87
-
-
84927637546
-
X-ray crystal structures of Escherichia coli RNA polymerase with switch region binding inhibitors enable rational design of squaramides with an improved fraction unbound to human plasma protein
-
Molodtsov, V.; Fleming, P.R.; Eyermann, C.J.; Ferguson, A.D.; Foulk, M.A.; McKinney, D.C.; Masse, C.E.; Buurman, E.T.; Murakami, K.S. X-ray crystal structures of Escherichia coli RNA polymerase with switch region binding inhibitors enable rational design of squaramides with an improved fraction unbound to human plasma protein. J. Med. Chem. 2015, 58, 3156-3171.
-
(2015)
J. Med. Chem
, vol.58
, pp. 3156-3171
-
-
Molodtsov, V.1
Fleming, P.R.2
Eyermann, C.J.3
Ferguson, A.D.4
Foulk, M.A.5
McKinney, D.C.6
Masse, C.E.7
Buurman, E.T.8
Murakami, K.S.9
-
88
-
-
84868586462
-
Novel rapidly diversifiable antimicrobial RNA polymerase switch region inhibitors with confirmed mode of action in Haemophilus influenzae
-
Buurman, E.T.; Foulk, M.A.; Gao, N.; Laganas, V.A.; McKinney, D.C.; Moustakas, D.T.; Rose, J.A.; Shapiro, A.B.; Fleming, P.R. Novel rapidly diversifiable antimicrobial RNA polymerase switch region inhibitors with confirmed mode of action in Haemophilus influenzae. J. Bacteriol. 2012, 194, 5504-5512.
-
(2012)
J. Bacteriol
, vol.194
, pp. 5504-5512
-
-
Buurman, E.T.1
Foulk, M.A.2
Gao, N.3
Laganas, V.A.4
McKinney, D.C.5
Moustakas, D.T.6
Rose, J.A.7
Shapiro, A.B.8
Fleming, P.R.9
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