-
1
-
-
76449098262
-
PHENIX: A comprehensive Python-based system for macromolecular structure solution
-
P.D. Adams, P.V. Afonine, G. Bunkóczi, V.B. Chen, I.W. Davis, N. Echols, J.J. Headd, L.W. Hung, G.J. Kapral, and R.W. Grosse-Kunstleve PHENIX: a comprehensive Python-based system for macromolecular structure solution Acta Crystallogr. D Biol. Crystallogr. 66 2010 213 221
-
(2010)
Acta Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
Afonine, P.V.2
Bunkóczi, G.3
Chen, V.B.4
Davis, I.W.5
Echols, N.6
Headd, J.J.7
Hung, L.W.8
Kapral, G.J.9
Grosse-Kunstleve, R.W.10
-
2
-
-
0035964342
-
Electrostatics of nanosystems: Application to microtubules and the ribosome
-
N.A. Baker, D. Sept, S. Joseph, M.J. Holst, and J.A. McCammon Electrostatics of nanosystems: application to microtubules and the ribosome Proc. Natl. Acad. Sci. USA 98 2001 10037 10041
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 10037-10041
-
-
Baker, N.A.1
Sept, D.2
Joseph, S.3
Holst, M.J.4
McCammon, J.A.5
-
3
-
-
69849098012
-
A novel nucleoid-associated protein of Mycobacterium tuberculosis is a sequence homolog of GroEL
-
D. Basu, G. Khare, S. Singh, A. Tyagi, S. Khosla, and S.C. Mande A novel nucleoid-associated protein of Mycobacterium tuberculosis is a sequence homolog of GroEL Nucleic Acids Res. 37 2009 4944 4954
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 4944-4954
-
-
Basu, D.1
Khare, G.2
Singh, S.3
Tyagi, A.4
Khosla, S.5
Mande, S.C.6
-
4
-
-
0035937403
-
Structural mechanism for rifampicin inhibition of bacterial rna polymerase
-
E.A. Campbell, N. Korzheva, A. Mustaev, K. Murakami, S. Nair, A. Goldfarb, and S.A. Darst Structural mechanism for rifampicin inhibition of bacterial rna polymerase Cell 104 2001 901 912
-
(2001)
Cell
, vol.104
, pp. 901-912
-
-
Campbell, E.A.1
Korzheva, N.2
Mustaev, A.3
Murakami, K.4
Nair, S.5
Goldfarb, A.6
Darst, S.A.7
-
5
-
-
84861542870
-
Use of differential scanning fluorimetry as a high-throughput assay to identify nuclear receptor ligands
-
K. DeSantis, A. Reed, R. Rahhal, and J. Reinking Use of differential scanning fluorimetry as a high-throughput assay to identify nuclear receptor ligands Nucl. Recept. Signal. 10 2012 e002
-
(2012)
Nucl. Recept. Signal.
, vol.10
, pp. 002
-
-
Desantis, K.1
Reed, A.2
Rahhal, R.3
Reinking, J.4
-
6
-
-
77955127115
-
The regulatory action of the myxobacterial CarD/CarG complex: A bacterial enhanceosome?
-
M. Elías-Arnanz, S. Padmanabhan, and F.J. Murillo The regulatory action of the myxobacterial CarD/CarG complex: a bacterial enhanceosome? FEMS Microbiol. Rev. 34 2010 764 778
-
(2010)
FEMS Microbiol. Rev.
, vol.34
, pp. 764-778
-
-
Elías-Arnanz, M.1
Padmanabhan, S.2
Murillo, F.J.3
-
8
-
-
84865128373
-
NMR structure note: N-terminal domain of Thermus thermophilus CdnL
-
A. Gallego-García, Y. Mirassou, M. Elías-Arnanz, S. Padmanabhan, and M.A. Jiménez NMR structure note: N-terminal domain of Thermus thermophilus CdnL J. Biomol. NMR 53 2012 355 363
-
(2012)
J. Biomol. NMR
, vol.53
, pp. 355-363
-
-
Gallego-García, A.1
Mirassou, Y.2
Elías-Arnanz, M.3
Padmanabhan, S.4
Jiménez, M.A.5
-
9
-
-
77955144096
-
CdnL, a member of the large CarD-like family of bacterial proteins, is vital for Myxococcus xanthus and differs functionally from the global transcriptional regulator CarD
-
D. García-Moreno, J. Abellón-Ruiz, F. García-Heras, F.J. Murillo, S. Padmanabhan, and M. Elías-Arnanz CdnL, a member of the large CarD-like family of bacterial proteins, is vital for Myxococcus xanthus and differs functionally from the global transcriptional regulator CarD Nucleic Acids Res. 38 2010 4586 4598
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 4586-4598
-
-
García-Moreno, D.1
Abellón-Ruiz, J.2
García-Heras, F.3
Murillo, F.J.4
Padmanabhan, S.5
Elías-Arnanz, M.6
-
11
-
-
70350048603
-
Structure-based design of DevR inhibitor active against nonreplicating Mycobacterium tuberculosis
-
R.K. Gupta, T.S. Thakur, G.R. Desiraju, and J.S. Tyagi Structure-based design of DevR inhibitor active against nonreplicating Mycobacterium tuberculosis J. Med. Chem. 52 2009 6324 6334
-
(2009)
J. Med. Chem.
, vol.52
, pp. 6324-6334
-
-
Gupta, R.K.1
Thakur, T.S.2
Desiraju, G.R.3
Tyagi, J.S.4
-
12
-
-
77954288774
-
Dali server: Conservation mapping in 3D
-
L. Holm, and P. Rosenström Dali server: conservation mapping in 3D Nucleic Acids Res. 38 Web Server issue 2010 W545 W549
-
(2010)
Nucleic Acids Res.
, vol.38
, Issue.WEB SERVER ISSUE
-
-
Holm, L.1
Rosenström, P.2
-
13
-
-
0043166919
-
A sensitive two-color electrophoretic mobility shift assay for detecting both nucleic acids and protein in gels
-
D. Jing, J. Agnew, W.F. Patton, J. Hendrickson, and J.M. Beechem A sensitive two-color electrophoretic mobility shift assay for detecting both nucleic acids and protein in gels Proteomics 3 2003 1172 1180
-
(2003)
Proteomics
, vol.3
, pp. 1172-1180
-
-
Jing, D.1
Agnew, J.2
Patton, W.F.3
Hendrickson, J.4
Beechem, J.M.5
-
15
-
-
13444307044
-
Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions
-
E. Krissinel, and K. Henrick Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions Acta Crystallogr. D Biol. Crystallogr. 60 2004 2256 2268
-
(2004)
Acta Crystallogr. D Biol. Crystallogr.
, vol.60
, pp. 2256-2268
-
-
Krissinel, E.1
Henrick, K.2
-
16
-
-
73649138940
-
Molecular evolution of multisubunit RNA polymerases: Sequence analysis
-
W.J. Lane, and S.A. Darst Molecular evolution of multisubunit RNA polymerases: sequence analysis J. Mol. Biol. 395 2010 671 685
-
(2010)
J. Mol. Biol.
, vol.395
, pp. 671-685
-
-
Lane, W.J.1
Darst, S.A.2
-
17
-
-
58149187898
-
PDBsum new things
-
R.A. Laskowski PDBsum new things Nucleic Acids Res. 37 Database issue 2009 D355 D359
-
(2009)
Nucleic Acids Res.
, vol.37
, Issue.DATABASE ISSUE
-
-
Laskowski, R.A.1
-
18
-
-
34447508216
-
Phaser crystallographic software
-
A.J. McCoy, R.W. Grosse-Kunstleve, P.D. Adams, M.D. Winn, L.C. Storoni, and R.J. Read Phaser crystallographic software J. Appl. Cryst. 40 2007 658 674
-
(2007)
J. Appl. Cryst.
, vol.40
, pp. 658-674
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Adams, P.D.3
Winn, M.D.4
Storoni, L.C.5
Read, R.J.6
-
19
-
-
0037123602
-
Structural basis of transcription initiation: An RNA polymerase holoenzyme-DNA complex
-
K.S. Murakami, S. Masuda, E.A. Campbell, O. Muzzin, and S.A. Darst Structural basis of transcription initiation: an RNA polymerase holoenzyme-DNA complex Science 296 2002 1285 1290
-
(2002)
Science
, vol.296
, pp. 1285-1290
-
-
Murakami, K.S.1
Masuda, S.2
Campbell, E.A.3
Muzzin, O.4
Darst, S.A.5
-
20
-
-
0028961335
-
SCOP: A structural classification of proteins database for the investigation of sequences and structures
-
A.G. Murzin, S.E. Brenner, T. Hubbard, and C. Chothia SCOP: a structural classification of proteins database for the investigation of sequences and structures J. Mol. Biol. 247 1995 536 540
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
21
-
-
0034682813
-
Dissection of two hallmarks of the open promoter complex by mutation in an RNA polymerase core subunit
-
S. Nechaev, M. Chlenov, and K. Severinov Dissection of two hallmarks of the open promoter complex by mutation in an RNA polymerase core subunit J. Biol. Chem. 275 2000 25516 25522
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 25516-25522
-
-
Nechaev, S.1
Chlenov, M.2
Severinov, K.3
-
22
-
-
0029901860
-
High mobility group I(Y)-like DNA-binding domains on a bacterial transcription factor
-
F.J. Nicolas, M.L. Cayuela, I.M. Martínez-Argudo, R.M. Ruiz-Vazquez, and F.J. Murillo High mobility group I(Y)-like DNA-binding domains on a bacterial transcription factor Proc. Natl. Acad. Sci. USA 93 1996 6881 6885
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 6881-6885
-
-
Nicolas, F.J.1
Cayuela, M.L.2
Martínez-Argudo, I.M.3
Ruiz-Vazquez, R.M.4
Murillo, F.J.5
-
23
-
-
4043069926
-
DksA: A critical component of the transcription initiation machinery that potentiates the regulation of rRNA promoters by ppGpp and the initiating NTP
-
B.J. Paul, M.M. Barker, W. Ross, D.A. Schneider, C. Webb, J.W. Foster, and R.L. Gourse DksA: a critical component of the transcription initiation machinery that potentiates the regulation of rRNA promoters by ppGpp and the initiating NTP Cell 118 2004 311 322
-
(2004)
Cell
, vol.118
, pp. 311-322
-
-
Paul, B.J.1
Barker, M.M.2
Ross, W.3
Schneider, D.A.4
Webb, C.5
Foster, J.W.6
Gourse, R.L.7
-
25
-
-
33746517973
-
Recruitment of a novel zinc-bound transcriptional factor by a bacterial HMGA-type protein is required for regulating multiple processes in Myxococcus xanthus
-
M. Peñalver-Mellado, F. García-Heras, S. Padmanabhan, D. García-Moreno, F.J. Murillo, and M. Elías-Arnanz Recruitment of a novel zinc-bound transcriptional factor by a bacterial HMGA-type protein is required for regulating multiple processes in Myxococcus xanthus Mol. Microbiol. 61 2006 910 926
-
(2006)
Mol. Microbiol.
, vol.61
, pp. 910-926
-
-
Peñalver-Mellado, M.1
García-Heras, F.2
Padmanabhan, S.3
García-Moreno, D.4
Murillo, F.J.5
Elías-Arnanz, M.6
-
26
-
-
4043108470
-
Regulation through the secondary channel - Structural framework for ppGpp-DksA synergism during transcription
-
A. Perederina, V. Svetlov, M.N. Vassylyeva, T.H. Tahirov, S. Yokoyama, I. Artsimovitch, and D.G. Vassylyev Regulation through the secondary channel - structural framework for ppGpp-DksA synergism during transcription Cell 118 2004 297 309
-
(2004)
Cell
, vol.118
, pp. 297-309
-
-
Perederina, A.1
Svetlov, V.2
Vassylyeva, M.N.3
Tahirov, T.H.4
Yokoyama, S.5
Artsimovitch, I.6
Vassylyev, D.G.7
-
27
-
-
4444221565
-
UCSF Chimera - A visualization system for exploratory research and analysis
-
E.F. Pettersen, T.D. Goddard, C.C. Huang, G.S. Couch, D.M. Greenblatt, E.C. Meng, and T.E. Ferrin UCSF Chimera - a visualization system for exploratory research and analysis J. Comput. Chem. 25 2004 1605 1612
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
Goddard, T.D.2
Huang, C.C.3
Couch, G.S.4
Greenblatt, D.M.5
Meng, E.C.6
Ferrin, T.E.7
-
28
-
-
62449223765
-
TargetTB: A target identification pipeline for Mycobacterium tuberculosis through an interactome, reactome and genome-scale structural analysis
-
K. Raman, K. Yeturu, and N. Chandra targetTB: a target identification pipeline for Mycobacterium tuberculosis through an interactome, reactome and genome-scale structural analysis BMC Syst. Biol. 2 2008 109
-
(2008)
BMC Syst. Biol.
, vol.2
, pp. 109
-
-
Raman, K.1
Yeturu, K.2
Chandra, N.3
-
29
-
-
37349033017
-
Drugs versus bugs: In pursuit of the persistent predator Mycobacterium tuberculosis
-
J.C. Sacchettini, E.J. Rubin, and J.S. Freundlich Drugs versus bugs: in pursuit of the persistent predator Mycobacterium tuberculosis Nat. Rev. Microbiol. 6 2008 41 52
-
(2008)
Nat. Rev. Microbiol.
, vol.6
, pp. 41-52
-
-
Sacchettini, J.C.1
Rubin, E.J.2
Freundlich, J.S.3
-
30
-
-
0035160012
-
SMN tudor domain structure and its interaction with the Sm proteins
-
P. Selenko, R. Sprangers, G. Stier, D. Bühler, U. Fischer, and M. Sattler SMN tudor domain structure and its interaction with the Sm proteins Nat. Struct. Biol. 8 2001 27 31
-
(2001)
Nat. Struct. Biol.
, vol.8
, pp. 27-31
-
-
Selenko, P.1
Sprangers, R.2
Stier, G.3
Bühler, D.4
Fischer, U.5
Sattler, M.6
-
31
-
-
0029861154
-
Structural modules of the large subunits of RNA polymerase. Introducing archaebacterial and chloroplast split sites in the beta and beta' subunits of Escherichia coli RNA polymerase
-
K. Severinov, A. Mustaev, A. Kukarin, O. Muzzin, I. Bass, S.A. Darst, and A. Goldfarb Structural modules of the large subunits of RNA polymerase. Introducing archaebacterial and chloroplast split sites in the beta and beta' subunits of Escherichia coli RNA polymerase J. Biol. Chem. 271 1996 27969 27974
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 27969-27974
-
-
Severinov, K.1
Mustaev, A.2
Kukarin, A.3
Muzzin, O.4
Bass, I.5
Darst, S.A.6
Goldfarb, A.7
-
32
-
-
42149158392
-
Control of bacterial transcription, translation and replication by (p)ppGpp
-
A. Srivatsan, and J.D. Wang Control of bacterial transcription, translation and replication by (p)ppGpp Curr. Opin. Microbiol. 11 2008 100 105
-
(2008)
Curr. Opin. Microbiol.
, vol.11
, pp. 100-105
-
-
Srivatsan, A.1
Wang, J.D.2
-
33
-
-
67649660560
-
CarD is an essential regulator of rRNA transcription required for Mycobacterium tuberculosis persistence
-
C.L. Stallings, N.C. Stephanou, L. Chu, A. Hochschild, B.E. Nickels, and M.S. Glickman CarD is an essential regulator of rRNA transcription required for Mycobacterium tuberculosis persistence Cell 138 2009 146 159
-
(2009)
Cell
, vol.138
, pp. 146-159
-
-
Stallings, C.L.1
Stephanou, N.C.2
Chu, L.3
Hochschild, A.4
Nickels, B.E.5
Glickman, M.S.6
-
34
-
-
78650310283
-
Crystal structure of bacterial RNA polymerase bound with a transcription inhibitor protein
-
S. Tagami, S. Sekine, T. Kumarevel, N. Hino, Y. Murayama, S. Kamegamori, M. Yamamoto, K. Sakamoto, and S. Yokoyama Crystal structure of bacterial RNA polymerase bound with a transcription inhibitor protein Nature 468 2010 978 982
-
(2010)
Nature
, vol.468
, pp. 978-982
-
-
Tagami, S.1
Sekine, S.2
Kumarevel, T.3
Hino, N.4
Murayama, Y.5
Kamegamori, S.6
Yamamoto, M.7
Sakamoto, K.8
Yokoyama, S.9
-
35
-
-
0037121936
-
Modulation of DNA repair by mutations flanking the DNA channel through RNA polymerase
-
B.W. Trautinger, and R.G. Lloyd Modulation of DNA repair by mutations flanking the DNA channel through RNA polymerase EMBO J. 21 2002 6944 6953
-
(2002)
EMBO J.
, vol.21
, pp. 6944-6953
-
-
Trautinger, B.W.1
Lloyd, R.G.2
-
36
-
-
33645119890
-
Structural perspective on mutations affecting the function of multisubunit RNA polymerases
-
V. Trinh, M.F. Langelier, J. Archambault, and B. Coulombe Structural perspective on mutations affecting the function of multisubunit RNA polymerases Microbiol. Mol. Biol. Rev. 70 2006 12 36
-
(2006)
Microbiol. Mol. Biol. Rev.
, vol.70
, pp. 12-36
-
-
Trinh, V.1
Langelier, M.F.2
Archambault, J.3
Coulombe, B.4
-
37
-
-
0037071844
-
Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 A resolution
-
D.G. Vassylyev, S. Sekine, O. Laptenko, J. Lee, M.N. Vassylyeva, S. Borukhov, and S. Yokoyama Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 A resolution Nature 417 2002 712 719
-
(2002)
Nature
, vol.417
, pp. 712-719
-
-
Vassylyev, D.G.1
Sekine, S.2
Laptenko, O.3
Lee, J.4
Vassylyeva, M.N.5
Borukhov, S.6
Yokoyama, S.7
-
38
-
-
84868595942
-
The Interaction of CarD with RNAP Mediates Mycobacterium tuberculosis Viability, Rifampicin Resistance, and Pathogenesis
-
L.A. Weiss, P.G. Harrison, B.E. Nickels, M.S. Glickman, E.A. Campbell, S.A. Darst, and C.L. Stallings The Interaction of CarD with RNAP Mediates Mycobacterium tuberculosis Viability, Rifampicin Resistance, and Pathogenesis J. Bacteriol. 2012
-
(2012)
J. Bacteriol.
-
-
Weiss, L.A.1
Harrison, P.G.2
Nickels, B.E.3
Glickman, M.S.4
Campbell, E.A.5
Darst, S.A.6
Stallings, C.L.7
-
39
-
-
78650415624
-
Structural basis for the bacterial transcription-repair coupling factor/RNA polymerase interaction
-
L.F. Westblade, E.A. Campbell, C. Pukhrambam, J.C. Padovan, B.E. Nickels, V. Lamour, and S.A. Darst Structural basis for the bacterial transcription-repair coupling factor/RNA polymerase interaction Nucleic Acids Res. 38 2010 8357 8369
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 8357-8369
-
-
Westblade, L.F.1
Campbell, E.A.2
Pukhrambam, C.3
Padovan, J.C.4
Nickels, B.E.5
Lamour, V.6
Darst, S.A.7
-
40
-
-
79953737180
-
Overview of the CCP4 suite and current developments
-
M.D. Winn, C.C. Ballard, K.D. Cowtan, E.J. Dodson, P. Emsley, P.R. Evans, R.M. Keegan, E.B. Krissinel, A.G. Leslie, and A. McCoy Overview of the CCP4 suite and current developments Acta Crystallogr. D Biol. Crystallogr. 67 2011 235 242
-
(2011)
Acta Crystallogr. D Biol. Crystallogr.
, vol.67
, pp. 235-242
-
-
Winn, M.D.1
Ballard, C.C.2
Cowtan, K.D.3
Dodson, E.J.4
Emsley, P.5
Evans, P.R.6
Keegan, R.M.7
Krissinel, E.B.8
Leslie, A.G.9
McCoy, A.10
-
41
-
-
84869862306
-
Structural basis of transcription initiation
-
Y. Zhang, Y. Feng, S. Chatterjee, S. Tuske, M.X. Ho, E. Arnold, and R.H. Ebright Structural basis of transcription initiation Science 338 2012 1076 1080
-
(2012)
Science
, vol.338
, pp. 1076-1080
-
-
Zhang, Y.1
Feng, Y.2
Chatterjee, S.3
Tuske, S.4
Ho, M.X.5
Arnold, E.6
Ebright, R.H.7
|