메뉴 건너뛰기




Volumn 5, Issue 7, 2016, Pages

Repertoire comparison of the B-cell receptor-encoding loci in humans and rhesus macaques by next-generation sequencing

Author keywords

[No Author keywords available]

Indexed keywords


EID: 85010849015     PISSN: None     EISSN: 20500068     Source Type: Journal    
DOI: 10.1038/CTI.2016.42     Document Type: Article
Times cited : (37)

References (70)
  • 1
    • 84880330645 scopus 로고    scopus 로고
    • Nonhuman primate models in AIDS research
    • Evans DT, Silvestri G. Nonhuman primate models in AIDS research. Curr Opin HIV AIDS 2013; 8: 255–261.
    • (2013) Curr Opin HIV AIDS , vol.8 , pp. 255-261
    • Evans, D.T.1    Silvestri, G.2
  • 2
    • 84897843380 scopus 로고    scopus 로고
    • Unraveling the pathogenesis of HIV peripheral neuropathy: Insights from a simian immunodeficiency virus macaque model
    • Mangus LM, Dorsey JL, Laast VA, Ringkamp M, Ebenezer GJ, Hauer P et al. Unraveling the pathogenesis of HIV peripheral neuropathy: insights from a simian immunodeficiency virus macaque model. ILAR J 2014; 54: 296–303.
    • (2014) ILAR J , vol.54 , pp. 296-303
    • Mangus, L.M.1    Dorsey, J.L.2    Laast, V.A.3    Ringkamp, M.4    Ebenezer, G.J.5    Hauer, P.6
  • 3
    • 84922962816 scopus 로고    scopus 로고
    • Monkey models of tuberculosis: Lessons learned
    • Peña JC, Ho W-Z. Monkey models of tuberculosis: lessons learned. Infect Immun 2015; 83: 852–862.
    • (2015) Infect Immun , vol.83 , pp. 852-862
    • Peña, J.C.1    Ho, W.-Z.2
  • 4
    • 84900826387 scopus 로고    scopus 로고
    • Modeling Parkinson’s disease in monkeys for translational studies, a critical analysis
    • Potts LF, Wu H, Singh A, Marcilla I, Luquin MR, Papa SM. Modeling Parkinson’s disease in monkeys for translational studies, a critical analysis. Exp Neurol 2014; 256: 133–143.
    • (2014) Exp Neurol , vol.256 , pp. 133-143
    • Potts, L.F.1    Wu, H.2    Singh, A.3    Marcilla, I.4    Luquin, M.R.5    Papa, S.M.6
  • 6
    • 84887126965 scopus 로고    scopus 로고
    • Nonhuman primate models in the genomic era: A paradigm shift
    • Vallender EJ, Miller GM. Nonhuman primate models in the genomic era: a paradigm shift. ILAR J 2013; 54: 154–165.
    • (2013) ILAR J , vol.54 , pp. 154-165
    • Vallender, E.J.1    Miller, G.M.2
  • 7
    • 84859315417 scopus 로고    scopus 로고
    • New drug discovery strategies for rheumatoid arthritis: A niche for nonhuman primate models to address systemic complications in inflammatory arthritis
    • Vierboom M, Breedveld E, ’t Hart BA. New drug discovery strategies for rheumatoid arthritis: a niche for nonhuman primate models to address systemic complications in inflammatory arthritis. Expert Opin Drug Discov 2012; 7: 315–325.
    • (2012) Expert Opin Drug Discov , vol.7 , pp. 315-325
    • Vierboom, M.1    Breedveld, E.2    ’T Hart, B.A.3
  • 8
    • 84880299051 scopus 로고    scopus 로고
    • Nonhuman primate models for Epstein-Barr virus infection
    • Wang F. Nonhuman primate models for Epstein-Barr virus infection. Curr Opin Virol 2013; 3: 233–237.
    • (2013) Curr Opin Virol , vol.3 , pp. 233-237
    • Wang, F.1
  • 9
    • 84891004548 scopus 로고    scopus 로고
    • Can non-human primates serve as models for investigating dengue disease pathogenesis?
    • Clark KB, Onlamoon N, Hsiao H-M, Perng GC, Villinger F. Can non-human primates serve as models for investigating dengue disease pathogenesis? Front Microbiol 2013; 4: 305.
    • (2013) Front Microbiol , vol.4 , pp. 305
    • Clark, K.B.1    Onlamoon, N.2    Hsiao, H.-M.3    Perng, G.C.4    Villinger, F.5
  • 10
    • 84920866291 scopus 로고    scopus 로고
    • Characterization of clinical and immunological parameters during Ebola virus infection of rhesus macaques
    • Martins K, Cooper C, Warren T, Wells J, Bell T, Raymond J et al. Characterization of clinical and immunological parameters during Ebola virus infection of rhesus macaques. Viral Immunol 2015; 28: 32–41.
    • (2015) Viral Immunol , vol.28 , pp. 32-41
    • Martins, K.1    Cooper, C.2    Warren, T.3    Wells, J.4    Bell, T.5    Raymond, J.6
  • 11
    • 84887072151 scopus 로고    scopus 로고
    • The essential detail: The genetics and genomics of the primate immune response
    • Shen S, Pyo C-W, Vu Q, Wang R, Geraghty DE. The essential detail: the genetics and genomics of the primate immune response. ILAR J 2013; 54: 181–195.
    • (2013) ILAR J , vol.54 , pp. 181-195
    • Shen, S.1    Pyo, C.-W.2    Vu, Q.3    Wang, R.4    Geraghty, D.E.5
  • 12
    • 68349157582 scopus 로고    scopus 로고
    • Toward an AIDS vaccine: Lessons from natural simian immunodeficiency virus infections of African nonhuman primate hosts
    • Sodora DL, Allan JS, Apetrei C, Brenchley JM, Douek DC, Else JG et al. Toward an AIDS vaccine: lessons from natural simian immunodeficiency virus infections of African nonhuman primate hosts. Nat Med 2009; 15: 861–865.
    • (2009) Nat Med , vol.15 , pp. 861-865
    • Sodora, D.L.1    Allan, J.S.2    Apetrei, C.3    Brenchley, J.M.4    Douek, D.C.5    Else, J.G.6
  • 13
    • 78650073132 scopus 로고    scopus 로고
    • Macaque long-term nonprogressors resist superinfection with multiple CD8+ T cell escape variants of simian immunodeficiency virus
    • Weinfurter JT, May GE, Soma T, Hessell AJ, León EJ, Macnair CE et al. Macaque long-term nonprogressors resist superinfection with multiple CD8+ T cell escape variants of simian immunodeficiency virus. JVirol2011; 85: 530–541.
    • (2011) Jvirol , vol.85 , pp. 530-541
    • Weinfurter, J.T.1    May, G.E.2    Soma, T.3    Hessell, A.J.4    León, E.J.5    Macnair, C.E.6
  • 14
    • 84880332697 scopus 로고    scopus 로고
    • Immunopathogenesis of simian immunodeficiency virus infection in nonhuman primates
    • Schmitz JE, Korioth-Schmitz B. Immunopathogenesis of simian immunodeficiency virus infection in nonhuman primates. Curr Opin HIV AIDS 2013; 8: 273–279.
    • (2013) Curr Opin HIV AIDS , vol.8 , pp. 273-279
    • Schmitz, J.E.1    Korioth-Schmitz, B.2
  • 15
    • 84881432219 scopus 로고    scopus 로고
    • SIV infection of rhesus macaques of Chinese origin: A suitable model for HIV infection in humans
    • Zhou Y, Bao R, Haigwood NL, Persidsky Y, Ho WZ. SIV infection of rhesus macaques of Chinese origin: a suitable model for HIV infection in humans. Retrovirology 2013; 10: 89.
    • (2013) Retrovirology , vol.10
    • Zhou, Y.1    Bao, R.2    Haigwood, N.L.3    Persidsky, Y.4    Ho, W.Z.5
  • 16
    • 0036603368 scopus 로고    scopus 로고
    • CD4+ lymphocytopenia in acute infection of Asian macaques by a vaginally transmissible subtype-C, CCR5-tropic Simian/Human Immunodeficiency Virus (SHIV)
    • Chen Z, Zhao X, Huang Y, Gettie A, Ba L, Blanchard J et al. CD4+ lymphocytopenia in acute infection of Asian macaques by a vaginally transmissible subtype-C, CCR5-tropic Simian/Human Immunodeficiency Virus (SHIV). JAcquirImmuneDefic Syndr 2002; 30: 133–145.
    • (2002) Jacquirimmunedefic Syndr , vol.30 , pp. 133-145
    • Chen, Z.1    Zhao, X.2    Huang, Y.3    Gettie, A.4    Ba, L.5    Blanchard, J.6
  • 17
    • 84865096278 scopus 로고    scopus 로고
    • Pathogenicity and mucosal transmissibility of the R5-tropic simian/human immuno-deficiency virus SHIV(AD8) in rhesus macaques: Implications for use in vaccine studies
    • Gautam R, Nishimura Y, Lee WR, Donau O, Buckler-White A, Shingai M et al. Pathogenicity and mucosal transmissibility of the R5-tropic simian/human immuno-deficiency virus SHIV(AD8) in rhesus macaques: implications for use in vaccine studies. JVirol2012; 86: 8516–8526.
    • (2012) Jvirol , vol.86 , pp. 8516-8526
    • Gautam, R.1    Nishimura, Y.2    Lee, W.R.3    Donau, O.4    Buckler-White, A.5    Shingai, M.6
  • 18
    • 0033617547 scopus 로고    scopus 로고
    • Distinct pathogenic sequela in rhesus macaques infected with CCR5 or CXCR4 utilizing SHIVs
    • Harouse JM, Gettie A, Tan RC, Blanchard J, Cheng-Mayer C. Distinct pathogenic sequela in rhesus macaques infected with CCR5 or CXCR4 utilizing SHIVs. Science 1999; 284: 816–819.
    • (1999) Science , vol.284 , pp. 816-819
    • Harouse, J.M.1    Gettie, A.2    Tan, R.C.3    Blanchard, J.4    Cheng-Mayer, C.5
  • 20
    • 68349160853 scopus 로고    scopus 로고
    • Effective, low-titer antibody protection against low-dose repeated mucosal SHIV challenge in macaques
    • Hessell AJ, Poignard P, Hunter M, Hangartner L, Tehrani DM, Bleeker WK et al. Effective, low-titer antibody protection against low-dose repeated mucosal SHIV challenge in macaques. Nat Med 2009; 15: 951–954.
    • (2009) Nat Med , vol.15 , pp. 951-954
    • Hessell, A.J.1    Poignard, P.2    Hunter, M.3    Hangartner, L.4    Tehrani, D.M.5    Bleeker, W.K.6
  • 21
    • 0037227768 scopus 로고    scopus 로고
    • Increased mucosal transmission but not enhanced pathogenicity of the CCR5-tropic, simian AIDS-inducing simian/human immunodeficiency virus SHIV(SF162P3) maps to envelope gp120
    • Hsu M, Harouse JM, Gettie A, Buckner C, Blanchard J, Cheng-Mayer C. Increased mucosal transmission but not enhanced pathogenicity of the CCR5-tropic, simian AIDS-inducing simian/human immunodeficiency virus SHIV(SF162P3) maps to envelope gp120. JVirol2003; 77: 989–998.
    • (2003) Jvirol , vol.77 , pp. 989-998
    • Hsu, M.1    Harouse, J.M.2    Gettie, A.3    Buckner, C.4    Blanchard, J.5    Cheng-Mayer, C.6
  • 22
    • 55649114213 scopus 로고    scopus 로고
    • SHIV-1157i and passaged progeny viruses encoding R5 HIV-1 clade C env cause AIDS in rhesus monkeys
    • Humbert M, Rasmussen RA, Song R, Ong H, Sharma P, Chenine AL et al. SHIV-1157i and passaged progeny viruses encoding R5 HIV-1 clade C env cause AIDS in rhesus monkeys. Retrovirology 2008; 5: 94.
    • (2008) Retrovirology , vol.5
    • Humbert, M.1    Rasmussen, R.A.2    Song, R.3    Ong, H.4    Sharma, P.5    Chenine, A.L.6
  • 23
    • 0029160894 scopus 로고
    • Persistent infection of rhesus macaques with T-cell-line-tropic and macrophage-tropic clones of simian/human immunodeficiency viruses (SHIV)
    • Luciw PA, Pratt-Lowe E, Shaw KE, Levy JA, Cheng-Mayer C. Persistent infection of rhesus macaques with T-cell-line-tropic and macrophage-tropic clones of simian/human immunodeficiency viruses (SHIV). Proc Natl Acad Sci USA 1995; 92: 7490–7494.
    • (1995) Proc Natl Acad Sci USA , vol.92 , pp. 7490-7494
    • Luciw, P.A.1    Pratt-Lowe, E.2    Shaw, K.E.3    Levy, J.A.4    Cheng-Mayer, C.5
  • 24
    • 77955490068 scopus 로고    scopus 로고
    • R5 clade C SHIV strains with tier 1 or 2 neutralization sensitivity: Tools to dissect env evolution and to develop AIDS vaccines in primate models
    • Siddappa NB, Watkins JD, Wassermann KJ, Song R, Wang W, Kramer VG et al. R5 clade C SHIV strains with tier 1 or 2 neutralization sensitivity: tools to dissect env evolution and to develop AIDS vaccines in primate models. PLoS One 2010; 5: e11689.
    • (2010) Plos One , vol.5
    • Siddappa, N.B.1    Watkins, J.D.2    Wassermann, K.J.3    Song, R.4    Wang, W.5    Kramer, V.G.6
  • 25
    • 34247352040 scopus 로고    scopus 로고
    • Evolutionary and biomedical insights from the rhesus macaque genome
    • Rhesus Macaque Genome Sequencing and Analysis Consortium, Gibbs RA, Rogers J, Katze MG, Bumgarner R, Weinstock GM et al. Evolutionary and biomedical insights from the rhesus macaque genome. Science 2007; 316: 222–234.
    • (2007) Science , vol.316 , pp. 222-234
    • Gibbs, R.A.1    Rogers, J.2    Katze, M.G.3    Bumgarner, R.4    Weinstock, G.M.5
  • 26
    • 84863915210 scopus 로고    scopus 로고
    • High-resolution definition of vaccine-elicited B cell responses against the HIV primary receptor binding site
    • Sundling C, Li Y, Huynh N, Poulsen C, Wilson R, O’Dell S et al. High-resolution definition of vaccine-elicited B cell responses against the HIV primary receptor binding site. Sci Transl Med 2012; 4: 142ra96.
    • (2012) Sci Transl Med , vol.4 , pp. 14
    • Sundling, C.1    Li, Y.2    Huynh, N.3    Poulsen, C.4    Wilson, R.5    O’Dell, S.6
  • 28
    • 2942680399 scopus 로고    scopus 로고
    • V(D)J recombination and the evolution of the adaptive immune system
    • Market E, Papavasiliou FN. V(D)J recombination and the evolution of the adaptive immune system. PLoS Biol 2003; 1: E16.
    • (2003) Plos Biol , vol.1 , pp. 16
    • Market, E.1    Papavasiliou, F.N.2
  • 29
    • 84872030858 scopus 로고    scopus 로고
    • Immunization of macaques with soluble HIV type 1 and influenza virus envelope glycoproteins results in a similarly rapid contraction of peripheral B-cell responses after boosting
    • Sundling C, Martinez P, Soldemo M, Spångberg M, Bengtsson KL, Stertman L et al. Immunization of macaques with soluble HIV type 1 and influenza virus envelope glycoproteins results in a similarly rapid contraction of peripheral B-cell responses after boosting. J Infect Dis 2013; 207: 426–431.
    • (2013) J Infect Dis , vol.207 , pp. 426-431
    • Sundling, C.1    Martinez, P.2    Soldemo, M.3    Spångberg, M.4    Bengtsson, K.L.5    Stertman, L.6
  • 30
    • 84867481204 scopus 로고    scopus 로고
    • Isolation of antibody V (D)J sequences from single cell sorted rhesus macaque B cells
    • Sundling C, Phad G, Douagi I, Navis M, Karlsson Hedestam GB. Isolation of antibody V (D)J sequences from single cell sorted rhesus macaque B cells. J Immunol Methods 2012; 386: 85–93.
    • (2012) J Immunol Methods , vol.386 , pp. 85-93
    • Sundling, C.1    Phad, G.2    Douagi, I.3    Navis, M.4    Karlsson Hedestam, G.B.5
  • 31
    • 84898652113 scopus 로고    scopus 로고
    • Single-cell and deep sequencing of IgG-switched macaque B cells reveal a diverse Ig repertoire following immunization
    • Sundling C, Zhang Z, Phad GE, Sheng Z, Wang Y, Mascola JR et al. Single-cell and deep sequencing of IgG-switched macaque B cells reveal a diverse Ig repertoire following immunization. JImmunol2014; 192: 3637–3644.
    • (2014) Jimmunol , vol.192 , pp. 3637-3644
    • Sundling, C.1    Zhang, Z.2    Phad, G.E.3    Sheng, Z.4    Wang, Y.5    Mascola, J.R.6
  • 33
    • 84927155041 scopus 로고    scopus 로고
    • Ramesh et al. Analysis of immunoglobulin transcripts and hypermutation following SHIV(AD8) infection and protein-plus-adjuvant immunization
    • Francica JR, Sheng Z, Zhang Z, Nishimura Y, Shingai M, Ramesh et al. Analysis of immunoglobulin transcripts and hypermutation following SHIV(AD8) infection and protein-plus-adjuvant immunization. Nat Commun 2015; 6: 6565.
    • (2015) Nat Commun , vol.6 , pp. 6565
    • Francica, J.R.1    Sheng, Z.2    Zhang, Z.3    Nishimura, Y.4    Shingai, M.5
  • 34
    • 85136605025 scopus 로고    scopus 로고
    • Rhesus macaque b-cell responses to an HIV-1 trimer vaccine revealed by unbiased longitudinal repertoire analysis
    • Dai K, He L, Khan SN, O’Dell S, McKee K, Tran K et al. Rhesus macaque b-cell responses to an HIV-1 trimer vaccine revealed by unbiased longitudinal repertoire analysis. MBio 2015; 6: e01375–01315.
    • (2015) Mbio , vol.6 , pp. 75
    • Dai, K.1    He, L.2    Khan, S.N.3    O’Dell, S.4    McKee, K.5    Tran, K.6
  • 35
    • 84925283189 scopus 로고    scopus 로고
    • Characterization of B and plasma cells in blood, bone marrow, and secondary lymphoid organs of rhesus macaques by multicolor flow cytometry
    • Neumann B, Klippert A, Raue K, Sopper S, Stahl-Hennig C. Characterization of B and plasma cells in blood, bone marrow, and secondary lymphoid organs of rhesus macaques by multicolor flow cytometry. J Leukoc Biol 2015; 97: 19–30.
    • (2015) J Leukoc Biol , vol.97 , pp. 19-30
    • Neumann, B.1    Klippert, A.2    Raue, K.3    Sopper, S.4    Stahl-Hennig, C.5
  • 36
    • 63849131879 scopus 로고    scopus 로고
    • Broad diversity of neutralizing antibodies isolated from memory B cells in HIV-infected individuals
    • Scheid JF, Mouquet H, Feldhahn N, Seaman MS, Velinzon K, Pietzsch J et al. Broad diversity of neutralizing antibodies isolated from memory B cells in HIV-infected individuals. Nature 2009; 458: 636–640.
    • (2009) Nature , vol.458 , pp. 636-640
    • Scheid, J.F.1    Mouquet, H.2    Feldhahn, N.3    Seaman, M.S.4    Velinzon, K.5    Pietzsch, J.6
  • 37
  • 38
    • 83455254775 scopus 로고    scopus 로고
    • Structure of HIV-1 gp120 V1/V2 domain with broadly neutralizing antibody PG9
    • McLellan JS, Pancera M, Carrico C, Gorman J, Julien J-P, Khayat R et al. Structure of HIV-1 gp120 V1/V2 domain with broadly neutralizing antibody PG9. Nature 2011; 480: 336–343.
    • (2011) Nature , vol.480 , pp. 336-343
    • McLellan, J.S.1    Pancera, M.2    Carrico, C.3    Gorman, J.4    Julien, J.-P.5    Khayat, R.6
  • 39
    • 70349887757 scopus 로고    scopus 로고
    • Broad and potent neutralizing antibodies from an African donor reveal a new HIV-1 vaccine target
    • Walker LM, Phogat SK, Chan-Hui PY, Wagner D, Phung P, Goss JL et al. Broad and potent neutralizing antibodies from an African donor reveal a new HIV-1 vaccine target. Science 2009; 326: 285–289.
    • (2009) Science , vol.326 , pp. 285-289
    • Walker, L.M.1    Phogat, S.K.2    Chan-Hui, P.Y.3    Wagner, D.4    Phung, P.5    Goss, J.L.6
  • 40
    • 18244422922 scopus 로고    scopus 로고
    • The broadly neutralizing anti-human immunodeficiency virus type 1 antibody 2G12 recognizes a cluster of alpha1–42 mannose residues on the outer face of gp120
    • Scanlan CN, Pantophlet R, Wormald MR, Ollmann Saphire E, Stanfield R, Wilson IA et al. The broadly neutralizing anti-human immunodeficiency virus type 1 antibody 2G12 recognizes a cluster of alpha1–42 mannose residues on the outer face of gp120. J Virol 2002; 76: 7306–7321.
    • (2002) J Virol , vol.76 , pp. 7306-7321
    • Scanlan, C.N.1    Pantophlet, R.2    Wormald, M.R.3    Ollmann Saphire, E.4    Stanfield, R.5    Wilson, I.A.6
  • 41
    • 77954920017 scopus 로고    scopus 로고
    • Rational design of envelope identifies broadly neutralizing human monoclonal antibodies to HIV-1
    • Wu X, Yang ZY, Li Y, Hogerkorp CM, Schief WR, Seaman MS et al. Rational design of envelope identifies broadly neutralizing human monoclonal antibodies to HIV-1. Science 2010; 329: 856–861.
    • (2010) Science , vol.329 , pp. 856-861
    • Wu, X.1    Yang, Z.Y.2    Li, Y.3    Hogerkorp, C.M.4    Schief, W.R.5    Seaman, M.S.6
  • 42
    • 84866493348 scopus 로고    scopus 로고
    • Broad and potent neutralization of HIV-1 by a gp41-specific human antibody
    • Huang J, Ofek G, Laub L, Louder MK, Doria-Rose NA, Longo NS et al. Broad and potent neutralization of HIV-1 by a gp41-specific human antibody. Nature 2012; 491: 406–412.
    • (2012) Nature , vol.491 , pp. 406-412
    • Huang, J.1    Ofek, G.2    Laub, L.3    Louder, M.K.4    Doria-Rose, N.A.5    Longo, N.S.6
  • 43
    • 80052938385 scopus 로고    scopus 로고
    • Analysis of a clonal lineage of HIV-1 envelope V2/V3 conformational epitope-specific broadly neutralizing antibodies and their inferred unmutated common ancestors
    • Bonsignori M, Hwang K-K, Chen X, Tsao C-Y, Morris L, Gray E et al. Analysis of a clonal lineage of HIV-1 envelope V2/V3 conformational epitope-specific broadly neutralizing antibodies and their inferred unmutated common ancestors. J Virol 2011; 85: 9998–10009.
    • (2011) J Virol , vol.85 , pp. 9998-10009
    • Bonsignori, M.1    Hwang, K.-K.2    Chen, X.3    Tsao, C.-Y.4    Morris, L.5    Gray, E.6
  • 44
    • 84864363185 scopus 로고    scopus 로고
    • Structural basis for germ-line gene usage of a potent class of antibodies targeting the CD4-binding site of HIV-1 gp120
    • West AP, Diskin R, Nussenzweig MC, Bjorkman PJ. Structural basis for germ-line gene usage of a potent class of antibodies targeting the CD4-binding site of HIV-1 gp120. Proc Natl Acad Sci USA 2012; 109: E2083–E2090.
    • (2012) Proc Natl Acad Sci USA , vol.109
    • West, A.P.1    Diskin, R.2    Nussenzweig, M.C.3    Bjorkman, P.J.4
  • 45
    • 80052925616 scopus 로고    scopus 로고
    • Sequence and structural convergence of broad and potent HIV antibodies that mimic CD4 binding
    • Scheid JF, Mouquet H, Ueberheide B, Diskin R, Klein F, Oliveira TY et al. Sequence and structural convergence of broad and potent HIV antibodies that mimic CD4 binding. Science 2011; 333: 1633–1637.
    • (2011) Science , vol.333 , pp. 1633-1637
    • Scheid, J.F.1    Mouquet, H.2    Ueberheide, B.3    Diskin, R.4    Klein, F.5    Oliveira, T.Y.6
  • 47
    • 84864762364 scopus 로고    scopus 로고
    • Frequency and genetic characterization of V(DD)J recombinants in the human peripheral blood antibody repertoire
    • Briney BS, Willis JR, Hicar MD, Thomas JW, Crowe JE. Frequency and genetic characterization of V(DD)J recombinants in the human peripheral blood antibody repertoire. Immunology 2012; 137: 56–64.
    • (2012) Immunology , vol.137 , pp. 56-64
    • Briney, B.S.1    Willis, J.R.2    Hicar, M.D.3    Thomas, J.W.4    Crowe, J.E.5
  • 50
    • 84884251320 scopus 로고    scopus 로고
    • Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform
    • Kozich JJ, Westcott SL, Baxter NT, Highlander SK, Schloss PD. Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform. Appl Environ Microbiol 2013; 79: 5112–5120.
    • (2013) Appl Environ Microbiol , vol.79 , pp. 5112-5120
    • Kozich, J.J.1    Westcott, S.L.2    Baxter, N.T.3    Highlander, S.K.4    Schloss, P.D.5
  • 51
    • 84934769334 scopus 로고    scopus 로고
    • Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform
    • Schirmer M, Ijaz UZ, D’Amore R, Hall N, Sloan WT, Quince C. Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform. Nucleic Acids Res 2015; 43: e37.
    • (2015) Nucleic Acids Res , vol.43 , pp. 37
    • Schirmer, M.1    Ijaz, U.Z.2    D’Amore, R.3    Hall, N.4    Sloan, W.T.5    Quince, C.6
  • 52
    • 84961289824 scopus 로고    scopus 로고
    • Toward a more accurate view of human B-cell repertoire by next-generation sequencing, unbiased repertoire capture and single-molecule barcoding
    • He L, Sok D, Azadnia P, Hsueh J, Landais E, Simek M et al. Toward a more accurate view of human B-cell repertoire by next-generation sequencing, unbiased repertoire capture and single-molecule barcoding. Sci Rep 2014; 4: 6778.
    • (2014) Sci Rep , vol.4
    • He, L.1    Sok, D.2    Azadnia, P.3    Hsueh, J.4    Landais, E.5    Simek, M.6
  • 53
    • 80755189340 scopus 로고    scopus 로고
    • Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques
    • Yan G, Zhang G, Fang X, Zhang Y, Li C, Ling F et al. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Nat Biotechnol 2011; 29: 1019–1023.
    • (2011) Nat Biotechnol , vol.29 , pp. 1019-1023
    • Yan, G.1    Zhang, G.2    Fang, X.3    Zhang, Y.4    Li, C.5    Ling, F.6
  • 56
    • 84911462885 scopus 로고    scopus 로고
    • HIV-1 receptor binding site-directed antibodies using a VH1-2 gene segment orthologue are activated by Env trimer immunization
    • Navis M, Tran K, Bale S, Phad GE, Guenaga J, Wilson R et al. HIV-1 receptor binding site-directed antibodies using a VH1-2 gene segment orthologue are activated by Env trimer immunization. PLoS Pathog 2014; 10: e1004337.
    • (2014) Plos Pathog , vol.10
    • Navis, M.1    Tran, K.2    Bale, S.3    Phad, G.E.4    Guenaga, J.5    Wilson, R.6
  • 57
    • 84905637816 scopus 로고    scopus 로고
    • Next generation sequencing reveals skewing of the T and B cell receptor repertoires in patients with wiskott-Aldrich syndrome
    • O’Connell AE, Volpi S, Dobbs K, Fiorini C, Tsitsikov E, de Boer H et al. Next generation sequencing reveals skewing of the T and B cell receptor repertoires in patients with wiskott-Aldrich syndrome. Front Immunol 2014; 5: 340.
    • (2014) Front Immunol , vol.5 , pp. 340
    • O’Connell, A.E.1    Volpi, S.2    Dobbs, K.3    Fiorini, C.4    Tsitsikov, E.5    de Boer, H.6
  • 58
    • 84948380517 scopus 로고    scopus 로고
    • Fowler et al. BCR repertoire sequencing: Different patterns of B-cell activation after two Meningococcal vaccines
    • Galson JD, Clutterbuck EA, Trück J, Ramasamy MN, Münz M, Fowler et al. BCR repertoire sequencing: different patterns of B-cell activation after two Meningococcal vaccines. Immunol Cell Biol 2015; 93: 885–895.
    • (2015) Immunol Cell Biol , vol.93 , pp. 885-895
    • Galson, J.D.1    Clutterbuck, E.A.2    Trück, J.3    Ramasamy, M.N.4    Münz, M.5
  • 60
    • 84920997236 scopus 로고    scopus 로고
    • B-cell repertoire responses to varicella-zoster vaccination in human identical twins
    • Wang C, Liu Y, Cavanagh MM, Le Saux S, Qi Q, Roskin KM et al. B-cell repertoire responses to varicella-zoster vaccination in human identical twins. Proc Natl Acad Sci USA 2015; 112: 500–505.
    • (2015) Proc Natl Acad Sci USA , vol.112 , pp. 500-505
    • Wang, C.1    Liu, Y.2    Cavanagh, M.M.3    Le Saux, S.4    Qi, Q.5    Roskin, K.M.6
  • 61
    • 84955654242 scopus 로고    scopus 로고
    • Aguilar-Salgado et al. Longitudinal analysis of the peripheral B cell repertoire reveals unique effects of immunization with a new influenza virus strain
    • Cortina-Ceballos B, Godoy-Lozano EE, Téllez-Sosa J, Ovilla-Muñoz M, Sámano-Sánchez H, Aguilar-Salgado et al. Longitudinal analysis of the peripheral B cell repertoire reveals unique effects of immunization with a new influenza virus strain. Genome Med 2015; 7: 124.
    • (2015) Genome Med , vol.7 , pp. 124
    • Cortina-Ceballos, B.1    Godoy-Lozano, E.E.2    Téllez-Sosa, J.3    Ovilla-Muñoz, M.4    Sámano-Sánchez, H.5
  • 62
    • 84876797103 scopus 로고    scopus 로고
    • Co-evolution of a broadly neutralizing HIV-1 antibody and founder virus
    • Liao HX, Lynch R, Zhou T, Gao F, Alam SM, Boyd SD et al. Co-evolution of a broadly neutralizing HIV-1 antibody and founder virus. Nature 2013; 496: 469–476.
    • (2013) Nature , vol.496 , pp. 469-476
    • Liao, H.X.1    Lynch, R.2    Zhou, T.3    Gao, F.4    Alam, S.M.5    Boyd, S.D.6
  • 63
    • 84877618448 scopus 로고    scopus 로고
    • Delineating antibody recognition in polyclonal sera from patterns of HIV-1 isolate neutralization
    • Georgiev IS, Doria-Rose NA, Zhou T, Kwon YD, Staupe RP, Moquin S et al. Delineating antibody recognition in polyclonal sera from patterns of HIV-1 isolate neutralization. Science 2013; 340: 751–756.
    • (2013) Science , vol.340 , pp. 751-756
    • Georgiev, I.S.1    Doria-Rose, N.A.2    Zhou, T.3    Kwon, Y.D.4    Staupe, R.P.5    Moquin, S.6
  • 64
    • 84055181327 scopus 로고    scopus 로고
    • Rapid development of glycan-specific, broad, and potent anti-HIV-1 gp120 neutralizing antibodies in an R5 SIV/HIV chimeric virus infected macaque
    • Walker LM, Sok D, Nishimura Y, Donau O, Sadjadpour R, Gautam R et al. Rapid development of glycan-specific, broad, and potent anti-HIV-1 gp120 neutralizing antibodies in an R5 SIV/HIV chimeric virus infected macaque. Proc Natl Acad Sci USA 2011; 108: 20125–20129.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 20125-20129
    • Walker, L.M.1    Sok, D.2    Nishimura, Y.3    Donau, O.4    Sadjadpour, R.5    Gautam, R.6
  • 65
    • 84931309311 scopus 로고    scopus 로고
    • Diverse antibody genetic and recognition properties revealed following HIV-1 envelope glycoprotein immunization
    • Phad GE, Vázquez Bernat N, Feng Y, Ingale J, Martinez Murillo PA, O’Dell S et al. Diverse antibody genetic and recognition properties revealed following HIV-1 envelope glycoprotein immunization. JImmunol2015; 194: 5903–5914.
    • (2015) Jimmunol , vol.194 , pp. 5903-5914
    • Phad, G.E.1    Vázquez Bernat, N.2    Feng, Y.3    Ingale, J.4    Martinez Murillo, P.A.5    O’Dell, S.6
  • 66
    • 84928485677 scopus 로고    scopus 로고
    • Ability to develop broadly neutralizing HIV-1 antibodies is not restricted by the germline Ig gene repertoire
    • Scheepers C, Shrestha RK, Lambson BE, Jackson KJL, Wright IA, Naicker D et al. Ability to develop broadly neutralizing HIV-1 antibodies is not restricted by the germline Ig gene repertoire. JImmunol2015; 194: 4371–4378.
    • (2015) Jimmunol , vol.194 , pp. 4371-4378
    • Scheepers, C.1    Shrestha, R.K.2    Lambson, B.E.3    Jackson, K.J.L.4    Wright, I.A.5    Naicker, D.6
  • 67
    • 80054913451 scopus 로고    scopus 로고
    • FLASH: Fast length adjustment of short reads to improve genome assemblies
    • Magoč T, Salzberg SL. FLASH: fast length adjustment of short reads to improve genome assemblies. Bioinformatics 2011; 27: 2957–2963.
    • (2011) Bioinformatics , vol.27 , pp. 2957-2963
    • Magoč, T.1    Salzberg, S.L.2
  • 68
    • 80255127234 scopus 로고    scopus 로고
    • Cutadapt removes adapter sequences from high-throughput sequencing reads
    • Martin M. Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet J 2011; 17: 10.
    • (2011) Embnet J , vol.17 , pp. 10
    • Martin, M.1
  • 69
    • 84883563447 scopus 로고    scopus 로고
    • IgBLAST: An immunoglobulin variable domain sequence analysis tool
    • Ye J, Ma N, Madden TL, Ostell JM. IgBLAST: an immunoglobulin variable domain sequence analysis tool. Nucleic Acids Res 2013; 41: W34–W40.
    • (2013) Nucleic Acids Res , vol.41 , pp. W34-W40
    • Ye, J.1    Ma, N.2    Madden, T.L.3    Ostell, J.M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.