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Volumn 6, Issue , 2015, Pages

Analysis of immunoglobulin transcripts and hypermutation following SHIVAD8 infection and protein-plus-adjuvant immunization

(56)  Francica, Joseph R a   Sheng, Zizhang b   Zhang, Zhenhai b,c   Nishimura, Yoshiaki a   Shingai, Masashi a   Ramesh, Akshaya d   Keele, Brandon F e   Schmidt, Stephen D a   Flynn, Barbara J a   Darko, Sam a   Lynch, Rebecca M a   Yamamoto, Takuya a   Matus Nicodemos, Rodrigo a   Wolinsky, David a   Nason, Martha a   Valiante, Nicholas M f   Malyala, Padma f   De Gregorio, Ennio f   Barnett, Susan W f   Singh, Manmohan f   more..


Author keywords

[No Author keywords available]

Indexed keywords

HUMAN IMMUNODEFICIENCY VIRUS VACCINE; IMMUNOGLOBULIN; VIRUS ENVELOPE PROTEIN; IMMUNOLOGICAL ADJUVANT; MESSENGER RNA; NEUTRALIZING ANTIBODY; VIRUS RNA;

EID: 84927155041     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms7565     Document Type: Article
Times cited : (74)

References (70)
  • 1
    • 84905469618 scopus 로고    scopus 로고
    • HIV-1 vaccines: Challenges and new perspectives
    • Excler, J. L., Robb, M. L. & Kim, J. H. HIV-1 vaccines: challenges and new perspectives. Hum. Vaccin. Immunother. 10, 1734-1746 (2014).
    • (2014) Hum. Vaccin. Immunother. , vol.10 , pp. 1734-1746
    • Excler, J.L.1    Robb, M.L.2    Kim, J.H.3
  • 2
    • 84883796903 scopus 로고    scopus 로고
    • Antibodies in HIV-1 vaccine development and therapy
    • Klein, F. et al. Antibodies in HIV-1 vaccine development and therapy. Science 341, 1199-1204 (2013).
    • (2013) Science , vol.341 , pp. 1199-1204
    • Klein, F.1
  • 3
    • 80053132436 scopus 로고    scopus 로고
    • Broad neutralization coverage of HIV by multiple highly potent antibodies
    • Walker, L. M. et al. Broad neutralization coverage of HIV by multiple highly potent antibodies. Nature 477, 466-470 (2011).
    • (2011) Nature , vol.477 , pp. 466-470
    • Walker, L.M.1
  • 4
    • 77954920017 scopus 로고    scopus 로고
    • Rational design of envelope identifies broadly neutralizing human monoclonal antibodies to HIV-1
    • Wu, X. et al. Rational design of envelope identifies broadly neutralizing human monoclonal antibodies to HIV-1. Science 329, 856-861 (2010).
    • (2010) Science , vol.329 , pp. 856-861
    • Wu, X.1
  • 5
    • 84879302728 scopus 로고    scopus 로고
    • HIV-1 neutralizing antibodies: Understanding nature's pathways
    • Mascola, J. R. & Haynes, B. F. HIV-1 neutralizing antibodies: understanding nature's pathways. Immunol. Rev. 254, 225-244 (2013).
    • (2013) Immunol. Rev. , vol.254 , pp. 225-244
    • Mascola, J.R.1    Haynes, B.F.2
  • 6
    • 84875759341 scopus 로고    scopus 로고
    • Somatic mutations of the immunoglobulin framework are generally required for broad and potent HIV-1 neutralization
    • Klein, F. et al. Somatic mutations of the immunoglobulin framework are generally required for broad and potent HIV-1 neutralization. Cell 153, 126-138 (2013).
    • (2013) Cell , vol.153 , pp. 126-138
    • Klein, F.1
  • 7
    • 80052925616 scopus 로고    scopus 로고
    • Sequence and structural convergence of broad and potent HIV antibodies that mimic CD4 binding
    • Scheid, J. F. et al. Sequence and structural convergence of broad and potent HIV antibodies that mimic CD4 binding. Science 333, 1633-1637 (2011).
    • (2011) Science , vol.333 , pp. 1633-1637
    • Scheid, J.F.1
  • 8
    • 70349887757 scopus 로고    scopus 로고
    • Broad and potent neutralizing antibodies from an African donor reveal a new HIV-1 vaccine target
    • Walker, L. M. et al. Broad and potent neutralizing antibodies from an African donor reveal a new HIV-1 vaccine target. Science 326, 285-289 (2009).
    • (2009) Science , vol.326 , pp. 285-289
    • Walker, L.M.1
  • 9
    • 84864363185 scopus 로고    scopus 로고
    • Structural basis for germ-line gene usage of a potent class of antibodies targeting the CD4-binding site of HIV-1 gp120
    • West, Jr. A. P., Diskin, R., Nussenzweig, M. C. & Bjorkman, P. J. Structural basis for germ-line gene usage of a potent class of antibodies targeting the CD4-binding site of HIV-1 gp120. Proc. Natl Acad. Sci. USA 109, E2083-E2090 (2012).
    • (2012) Proc. Natl Acad. Sci. USA , vol.109 , pp. E2083-E2090
    • West, A.P.1    Diskin, R.2    Nussenzweig, M.C.3    Bjorkman, P.J.4
  • 10
    • 84055181327 scopus 로고    scopus 로고
    • Rapid development of glycan-specific, broad, and potent anti-HIV-1 gp120 neutralizing antibodies in an R5 SIV/HIV chimeric virus infected macaque
    • Walker, L. M. et al. Rapid development of glycan-specific, broad, and potent anti-HIV-1 gp120 neutralizing antibodies in an R5 SIV/HIV chimeric virus infected macaque. Proc. Natl Acad. Sci. USA 108, 20125-20129 (2011).
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 20125-20129
    • Walker, L.M.1
  • 11
    • 84863915210 scopus 로고    scopus 로고
    • High-resolution definition of vaccine-elicited B cell responses against the HIV primary receptor binding site
    • Sundling, C. et al. High-resolution definition of vaccine-elicited B cell responses against the HIV primary receptor binding site. Sci. Transl. Med. 4, 142ra196 (2012).
    • (2012) Sci. Transl. Med. , vol.4 , pp. 142ra196
    • Sundling, C.1
  • 12
    • 82355171239 scopus 로고    scopus 로고
    • Induction of antibodies in rhesus macaques that recognize a fusion-intermediate conformation of HIV-1 gp41
    • Dennison, S. M. et al. Induction of antibodies in rhesus macaques that recognize a fusion-intermediate conformation of HIV-1 gp41. PLoS ONE 6, e27824 (2011).
    • (2011) PLoS ONE , vol.6 , pp. e27824
    • Dennison, S.M.1
  • 13
    • 49049103924 scopus 로고    scopus 로고
    • Expression and function of Toll-like receptors on dendritic cells and other antigen presenting cells from non-human primates
    • Ketloy, C. et al. Expression and function of Toll-like receptors on dendritic cells and other antigen presenting cells from non-human primates. Vet. Immunol. Immunopathol. 125, 18-30 (2008).
    • (2008) Vet. Immunol. Immunopathol. , vol.125 , pp. 18-30
    • Ketloy, C.1
  • 14
    • 80053625388 scopus 로고    scopus 로고
    • Human and rhesus plasmacytoid dendritic cell and B-cell responses to Toll-like receptor stimulation
    • Gujer, C., Sundling, C., Seder, R. A., Karlsson Hedestam, G. B. & Lore, K. Human and rhesus plasmacytoid dendritic cell and B-cell responses to Toll-like receptor stimulation. Immunology 134, 257-269 (2011).
    • (2011) Immunology , vol.134 , pp. 257-269
    • Gujer, C.1    Sundling, C.2    Seder, R.A.3    Karlsson Hedestam, G.B.4    Lore, K.5
  • 15
    • 50949114906 scopus 로고    scopus 로고
    • The use of nonhuman primate models in HIV vaccine development
    • Morgan, C. et al. The use of nonhuman primate models in HIV vaccine development. PLoS Med. 5, e173 (2008).
    • (2008) PLoS Med. , vol.5 , pp. e173
    • Morgan, C.1
  • 16
    • 0026771111 scopus 로고
    • Nonhuman primate models for HIV vaccine development
    • Letvin, N. L. Nonhuman primate models for HIV vaccine development. Immunodefic. Rev. 3, 247-260 (1992).
    • (1992) Immunodefic. Rev. , vol.3 , pp. 247-260
    • Letvin, N.L.1
  • 17
    • 84882589754 scopus 로고    scopus 로고
    • Multidonor analysis reveals structural elements, genetic determinants, and maturation pathway for HIV-1 neutralization by VRC01-class antibodies
    • Zhou, T. et al. Multidonor analysis reveals structural elements, genetic determinants, and maturation pathway for HIV-1 neutralization by VRC01-class antibodies. Immunity 39, 245-258 (2013).
    • (2013) Immunity , vol.39 , pp. 245-258
    • Zhou, T.1
  • 18
    • 84872616030 scopus 로고    scopus 로고
    • Somatic populations of PGT135-137 HIV-1-neutralizing antibodies identified by 454 pyrosequencing and bioinformatics
    • Zhu, J. et al. Somatic populations of PGT135-137 HIV-1-neutralizing antibodies identified by 454 pyrosequencing and bioinformatics. Front. Microbiol. 3, 315 (2012).
    • (2012) Front. Microbiol. , vol.3 , pp. 315
    • Zhu, J.1
  • 19
    • 84886430146 scopus 로고    scopus 로고
    • De novo identification of VRC01 class HIV-1-neutralizing antibodies by next-generation sequencing of B-cell transcripts
    • Zhu, J. et al. De novo identification of VRC01 class HIV-1-neutralizing antibodies by next-generation sequencing of B-cell transcripts. Proc. Natl Acad. Sci. USA 110, E4088-E4097 (2013).
    • (2013) Proc. Natl Acad. Sci. USA , vol.110 , pp. E4088-E4097
    • Zhu, J.1
  • 20
    • 34247352040 scopus 로고    scopus 로고
    • Evolutionary and biomedical insights from the rhesus macaque genome
    • Rhesus Macaque Genome, S. et al. Evolutionary and biomedical insights from the rhesus macaque genome. Science 316, 222-234 (2007).
    • (2007) Science , vol.316 , pp. 222-234
  • 21
    • 84870361929 scopus 로고    scopus 로고
    • Most rhesus macaques infected with the CCR5-tropic SHIV(AD8) generate cross-reactive antibodies that neutralize multiple HIV-1 strains
    • Shingai, M. et al. Most rhesus macaques infected with the CCR5-tropic SHIV(AD8) generate cross-reactive antibodies that neutralize multiple HIV-1 strains. Proc. Natl Acad. Sci. USA 109, 19769-19774 (2012).
    • (2012) Proc. Natl Acad. Sci. USA , vol.109 , pp. 19769-19774
    • Shingai, M.1
  • 22
    • 77950787447 scopus 로고    scopus 로고
    • Generation of the pathogenic R5-tropic simian/human immunodeficiency virus SHIVAD8 by serial passaging in rhesus macaques
    • Nishimura, Y. et al. Generation of the pathogenic R5-tropic simian/human immunodeficiency virus SHIVAD8 by serial passaging in rhesus macaques. J. Virol. 84, 4769-4781 (2010).
    • (2010) J. Virol. , vol.84 , pp. 4769-4781
    • Nishimura, Y.1
  • 23
    • 33644874839 scopus 로고    scopus 로고
    • IMGT/LIGM-DB, the IMGT comprehensive database of immunoglobulin and T cell receptor nucleotide sequences
    • Giudicelli, V. et al. IMGT/LIGM-DB, the IMGT comprehensive database of immunoglobulin and T cell receptor nucleotide sequences. Nucleic Acids Res. 34, D781-D784 (2006).
    • (2006) Nucleic Acids Res. , vol.34 , pp. D781-D784
    • Giudicelli, V.1
  • 24
    • 84864762364 scopus 로고    scopus 로고
    • Frequency and genetic characterization of V(DD)J recombinants in the human peripheral blood antibody repertoire
    • Briney, B. S., Willis, J. R., Hicar, M. D., Thomas, 2nd J. W. & Crowe, Jr. J. E. Frequency and genetic characterization of V(DD)J recombinants in the human peripheral blood antibody repertoire. Immunology 137, 56-64 (2012).
    • (2012) Immunology , vol.137 , pp. 56-64
    • Briney, B.S.1    Willis, J.R.2    Hicar, M.D.3    Thomas, J.W.4    Crowe, J.E.5
  • 25
    • 84899991983 scopus 로고    scopus 로고
    • Developmental pathway for potent V1V2-directed HIV-neutralizing antibodies
    • Doria-Rose, N. A. et al. Developmental pathway for potent V1V2-directed HIV-neutralizing antibodies. Nature 509, 55-62 (2014).
    • (2014) Nature , vol.509 , pp. 55-62
    • Doria-Rose, N.A.1
  • 26
    • 84880149399 scopus 로고    scopus 로고
    • Structural basis for diverse N-glycan recognition by HIV-1- neutralizing V1-V2-directed antibody PG16
    • Pancera, M. et al. Structural basis for diverse N-glycan recognition by HIV-1- neutralizing V1-V2-directed antibody PG16. Nat. Struct. Mol. Biol. 20, 804-813 (2013).
    • (2013) Nat. Struct. Mol. Biol. , vol.20 , pp. 804-813
    • Pancera, M.1
  • 27
    • 84861963478 scopus 로고    scopus 로고
    • The mechanism of action of MF59 - An innately attractive adjuvant formulation
    • O'Hagan, D. T., Ott, G. S., De Gregorio, E. & Seubert, A. The mechanism of action of MF59 - an innately attractive adjuvant formulation. Vaccine 30, 4341-4348 (2012).
    • (2012) Vaccine , vol.30 , pp. 4341-4348
    • O'Hagan, D.T.1    Ott, G.S.2    De Gregorio, E.3    Seubert, A.4
  • 28
    • 79957840765 scopus 로고    scopus 로고
    • MF59 adjuvant enhances diversity and affinity of antibody-mediated immune response to pandemic influenza vaccines
    • Khurana, S. et al. MF59 adjuvant enhances diversity and affinity of antibody-mediated immune response to pandemic influenza vaccines. Sci. Transl. Med. 3, 85ra48 (2011).
    • (2011) Sci. Transl. Med. , vol.3 , pp. 85ra48
    • Khurana, S.1
  • 29
    • 33746096523 scopus 로고    scopus 로고
    • Enhanced humoral and memory B cellular immunity using HPV16/18 L1 VLP vaccine formulated with the MPL/aluminium salt combination (AS04) compared to aluminium salt only
    • Giannini, S. L. et al. Enhanced humoral and memory B cellular immunity using HPV16/18 L1 VLP vaccine formulated with the MPL/aluminium salt combination (AS04) compared to aluminium salt only. Vaccine 24, 5937-5949 (2006).
    • (2006) Vaccine , vol.24 , pp. 5937-5949
    • Giannini, S.L.1
  • 30
    • 41449112158 scopus 로고    scopus 로고
    • Protection, systemic IFNgamma, and antibody responses induced by an ISCOM-based vaccine against a recent equine influenza virus in its natural host
    • Paillot, R., Grimmett, H., Elton, D. & Daly, J. M. Protection, systemic IFNgamma, and antibody responses induced by an ISCOM-based vaccine against a recent equine influenza virus in its natural host. Vet. Res. 39, 21 (2008).
    • (2008) Vet. Res. , vol.39 , pp. 21
    • Paillot, R.1    Grimmett, H.2    Elton, D.3    Daly, J.M.4
  • 31
    • 0037212339 scopus 로고    scopus 로고
    • IMGT unique numbering for immunoglobulin and T cell receptor variable domains and Ig superfamily V-like domains
    • Lefranc, M. P. et al. IMGT unique numbering for immunoglobulin and T cell receptor variable domains and Ig superfamily V-like domains. Dev. Comp. Immunol. 27, 55-77 (2003).
    • (2003) Dev. Comp. Immunol. , vol.27 , pp. 55-77
    • Lefranc, M.P.1
  • 32
    • 73949084963 scopus 로고    scopus 로고
    • Breadth of human immunodeficiency virus-specific neutralizing activity in sera: Clustering analysis and association with clinical variables
    • Doria-Rose, N. A. et al. Breadth of human immunodeficiency virus-specific neutralizing activity in sera: clustering analysis and association with clinical variables. J. Virol. 84, 1631-1636 (2010).
    • (2010) J. Virol. , vol.84 , pp. 1631-1636
    • Doria-Rose, N.A.1
  • 33
    • 70349298392 scopus 로고    scopus 로고
    • Breadth of neutralizing antibody response to human immunodeficiency virus type 1 is affected by factors early in infection but does not influence disease progression
    • Piantadosi, A. et al. Breadth of neutralizing antibody response to human immunodeficiency virus type 1 is affected by factors early in infection but does not influence disease progression. J. Virol. 83, 10269-10274 (2009).
    • (2009) J. Virol. , vol.83 , pp. 10269-10274
    • Piantadosi, A.1
  • 34
    • 58149487645 scopus 로고    scopus 로고
    • Factors associated with the development of cross-reactive neutralizing antibodies during human immunodeficiency virus type 1 infection
    • Sather, D. N. et al. Factors associated with the development of cross-reactive neutralizing antibodies during human immunodeficiency virus type 1 infection. J. Virol. 83, 757-769 (2009).
    • (2009) J. Virol. , vol.83 , pp. 757-769
    • Sather, D.N.1
  • 35
    • 0035168058 scopus 로고    scopus 로고
    • Immunogenicity and protective efficacy of oligomeric human immunodeficiency virus type 1 gp140
    • Earl, P. L. et al. Immunogenicity and protective efficacy of oligomeric human immunodeficiency virus type 1 gp140. J. Virol. 75, 645-653 (2001).
    • (2001) J. Virol. , vol.75 , pp. 645-653
    • Earl, P.L.1
  • 36
    • 77956261658 scopus 로고    scopus 로고
    • Soluble HIV-1 Env trimers in adjuvant elicit potent and diverse functional B cell responses in primates
    • Sundling, C. et al. Soluble HIV-1 Env trimers in adjuvant elicit potent and diverse functional B cell responses in primates. J. Exp. Med. 207, 2003-2017 (2010).
    • (2010) J. Exp. Med. , vol.207 , pp. 2003-2017
    • Sundling, C.1
  • 37
    • 84857777282 scopus 로고    scopus 로고
    • Distinct TLR adjuvants differentially stimulate systemic and local innate immune responses in nonhuman primates
    • Kwissa, M., Nakaya, H. I., Oluoch, H. & Pulendran, B. Distinct TLR adjuvants differentially stimulate systemic and local innate immune responses in nonhuman primates. Blood 119, 2044-2055 (2012).
    • (2012) Blood , vol.119 , pp. 2044-2055
    • Kwissa, M.1    Nakaya, H.I.2    Oluoch, H.3    Pulendran, B.4
  • 38
    • 77958498224 scopus 로고    scopus 로고
    • Vaccine adjuvants: Putting innate immunity to work
    • Coffman, R. L., Sher, A. & Seder, R. A. Vaccine adjuvants: putting innate immunity to work. Immunity 33, 492-503 (2010).
    • (2010) Immunity , vol.33 , pp. 492-503
    • Coffman, R.L.1    Sher, A.2    Seder, R.A.3
  • 39
    • 33751563152 scopus 로고    scopus 로고
    • Macrophages and myeloid dendritic cells, but not plasmacytoid dendritic cells, produce IL-10 in response to MyD88- and TRIF-dependent TLR signals, and TLR-independent signals
    • Boonstra, A. et al. Macrophages and myeloid dendritic cells, but not plasmacytoid dendritic cells, produce IL-10 in response to MyD88- and TRIF-dependent TLR signals, and TLR-independent signals. J. Immunol. 177, 7551-7558 (2006).
    • (2006) J. Immunol. , vol.177 , pp. 7551-7558
    • Boonstra, A.1
  • 40
    • 84860292969 scopus 로고    scopus 로고
    • BCR-signalling synergizes with TLR-signalling for induction of AID and immunoglobulin class-switching through the non-canonical NFkappaB pathway
    • Pone, E. J. et al. BCR-signalling synergizes with TLR-signalling for induction of AID and immunoglobulin class-switching through the non-canonical NFkappaB pathway. Nat. Commun. 3, 767 (2012).
    • (2012) Nat. Commun. , vol.3 , pp. 767
    • Pone, E.J.1
  • 41
    • 78650660388 scopus 로고    scopus 로고
    • TLR ligation triggers somatic hypermutation in transitional B cells inducing the generation of IgM memory B cells
    • Aranburu, A. et al. TLR ligation triggers somatic hypermutation in transitional B cells inducing the generation of IgM memory B cells. J. Immunol. 185, 7293-7301 (2010).
    • (2010) J. Immunol. , vol.185 , pp. 7293-7301
    • Aranburu, A.1
  • 42
    • 20844436439 scopus 로고    scopus 로고
    • Co-administration of CpG oligonucleotides enhances the late affinity maturation process of human anti-hepatitis B vaccine response
    • Siegrist, C. A. et al. Co-administration of CpG oligonucleotides enhances the late affinity maturation process of human anti-hepatitis B vaccine response. Vaccine 23, 615-622 (2004).
    • (2004) Vaccine , vol.23 , pp. 615-622
    • Siegrist, C.A.1
  • 43
    • 84884678235 scopus 로고    scopus 로고
    • A next-generation cleaved, soluble HIV-1 Env Trimer, BG505 SOSIP.664 gp140, expresses multiple epitopes for broadly neutralizing but not non-neutralizing antibodies
    • Sanders, R. W. et al. A next-generation cleaved, soluble HIV-1 Env Trimer, BG505 SOSIP.664 gp140, expresses multiple epitopes for broadly neutralizing but not non-neutralizing antibodies. PLoS Pathog. 9, e1003618 (2013).
    • (2013) PLoS Pathog. , vol.9 , pp. e1003618
    • Sanders, R.W.1
  • 44
    • 84908388832 scopus 로고    scopus 로고
    • Envelope variants circulating as initial neutralization breadth developed in two HIV-infected subjects stimulate multiclade neutralizing antibodies in rabbits
    • Malherbe, D. C. et al. Envelope variants circulating as initial neutralization breadth developed in two HIV-infected subjects stimulate multiclade neutralizing antibodies in rabbits. J. Virol. 88, 12949-12967 (2014).
    • (2014) J. Virol. , vol.88 , pp. 12949-12967
    • Malherbe, D.C.1
  • 45
    • 84876797103 scopus 로고    scopus 로고
    • Co-evolution of a broadly neutralizing HIV-1 antibody and founder virus
    • Liao, H. X. et al. Co-evolution of a broadly neutralizing HIV-1 antibody and founder virus. Nature 496, 469-476 (2013).
    • (2013) Nature , vol.496 , pp. 469-476
    • Liao, H.X.1
  • 46
    • 0025781883 scopus 로고
    • Multiple mechanisms participate in the generation of diversity of human H chain CDR3 regions
    • Sanz, I. Multiple mechanisms participate in the generation of diversity of human H chain CDR3 regions. J. Immunol. 147, 1720-1729 (1991).
    • (1991) J. Immunol. , vol.147 , pp. 1720-1729
    • Sanz, I.1
  • 47
    • 84860706280 scopus 로고    scopus 로고
    • Human peripheral blood antibodies with long HCDR3s are established primarily at original recombination using a limited subset of germline genes
    • Briney, B. S., Willis, J. R. & Crowe, Jr. J. E. Human peripheral blood antibodies with long HCDR3s are established primarily at original recombination using a limited subset of germline genes. PLoS ONE 7, e36750 (2012).
    • (2012) PLoS ONE , vol.7 , pp. e36750
    • Briney, B.S.1    Willis, J.R.2    Crowe, J.E.3
  • 48
    • 84890365250 scopus 로고    scopus 로고
    • IgM repertoire biodiversity is reduced in HIV-1 infection and systemic lupus erythematosus
    • Yin, L. et al. IgM repertoire biodiversity is reduced in HIV-1 infection and systemic lupus erythematosus. Front. Immunol. 4, 373 (2013).
    • (2013) Front. Immunol. , vol.4 , pp. 373
    • Yin, L.1
  • 49
    • 84866949036 scopus 로고    scopus 로고
    • Structural and genetic basis for development of broadly neutralizing influenza antibodies
    • Lingwood, D. et al. Structural and genetic basis for development of broadly neutralizing influenza antibodies. Nature 489, 566-570 (2012).
    • (2012) Nature , vol.489 , pp. 566-570
    • Lingwood, D.1
  • 50
    • 84898652113 scopus 로고    scopus 로고
    • Single-cell and deep sequencing of IgG-switched macaque B cells reveal a diverse Ig repertoire following immunization
    • Sundling, C. et al. Single-cell and deep sequencing of IgG-switched macaque B cells reveal a diverse Ig repertoire following immunization. J. Immunol. 192, 3637-3644 (2014).
    • (2014) J. Immunol. , vol.192 , pp. 3637-3644
    • Sundling, C.1
  • 51
    • 84887560765 scopus 로고    scopus 로고
    • Deep sequencing and Circos analyses of antibody libraries reveal antigen-driven selection of Ig VH genes during HIV-1 infection
    • Xiao, M., Prabakaran, P., Chen, W., Kessing, B. & Dimitrov, D. S. Deep sequencing and Circos analyses of antibody libraries reveal antigen-driven selection of Ig VH genes during HIV-1 infection. Exp. Mol. Pathol. 95, 357-363 (2013).
    • (2013) Exp. Mol. Pathol. , vol.95 , pp. 357-363
    • Xiao, M.1    Prabakaran, P.2    Chen, W.3    Kessing, B.4    Dimitrov, D.S.5
  • 52
    • 79953316880 scopus 로고    scopus 로고
    • Comparison of antibody repertoires produced by HIV-1 infection, other chronic and acute infections, and systemic autoimmune disease
    • Breden, F. et al. Comparison of antibody repertoires produced by HIV-1 infection, other chronic and acute infections, and systemic autoimmune disease. PLoS ONE 6, e16857 (2011).
    • (2011) PLoS ONE , vol.6 , pp. e16857
    • Breden, F.1
  • 53
    • 0033942484 scopus 로고    scopus 로고
    • Short- and long-term clinical outcomes in rhesus monkeys inoculated with a highly pathogenic chimeric simian/human immunodeficiency virus
    • Endo, Y. et al. Short- and long-term clinical outcomes in rhesus monkeys inoculated with a highly pathogenic chimeric simian/human immunodeficiency virus. J. Virol. 74, 6935-6945 (2000).
    • (2000) J. Virol. , vol.74 , pp. 6935-6945
    • Endo, Y.1
  • 54
    • 84865096278 scopus 로고    scopus 로고
    • Pathogenicity and mucosal transmissibility of the R5-tropic simian/human immunodeficiency virus SHIV(AD8) in rhesus macaques: Implications for use in vaccine studies
    • Gautam, R. et al. Pathogenicity and mucosal transmissibility of the R5-tropic simian/human immunodeficiency virus SHIV(AD8) in rhesus macaques: implications for use in vaccine studies. J. Virol. 86, 8516-8526 (2012).
    • (2012) J. Virol. , vol.86 , pp. 8516-8526
    • Gautam, R.1
  • 55
    • 27144524041 scopus 로고    scopus 로고
    • Evaluation of envelope vaccines derived from the South African subtype C human immunodeficiency virus type 1 TV1 strain
    • Lian, Y. et al. Evaluation of envelope vaccines derived from the South African subtype C human immunodeficiency virus type 1 TV1 strain. J. Virol. 79, 13338-13349 (2005).
    • (2005) J. Virol. , vol.79 , pp. 13338-13349
    • Lian, Y.1
  • 56
    • 67349249406 scopus 로고    scopus 로고
    • MF59 emulsion is an effective delivery system for a synthetic TLR4 agonist (E6020)
    • Baudner, B. C. et al. MF59 emulsion is an effective delivery system for a synthetic TLR4 agonist (E6020). Pharm. Res. 26, 1477-1485 (2009).
    • (2009) Pharm. Res. , vol.26 , pp. 1477-1485
    • Baudner, B.C.1
  • 57
    • 23244434512 scopus 로고    scopus 로고
    • Human immunodeficiency virus type 1 env clones from acute and early subtype B infections for standardized assessments of vaccine-elicited neutralizing antibodies
    • Li, M. et al. Human immunodeficiency virus type 1 env clones from acute and early subtype B infections for standardized assessments of vaccine-elicited neutralizing antibodies. J. Virol. 79, 10108-10125 (2005).
    • (2005) J. Virol. , vol.79 , pp. 10108-10125
    • Li, M.1
  • 58
    • 33846087269 scopus 로고    scopus 로고
    • Efficient protein boosting after plasmid DNA or recombinant adenovirus immunization with HIV-1 vaccine constructs
    • Shu, Y. et al. Efficient protein boosting after plasmid DNA or recombinant adenovirus immunization with HIV-1 vaccine constructs. Vaccine 25, 1398-1408 (2007).
    • (2007) Vaccine , vol.25 , pp. 1398-1408
    • Shu, Y.1
  • 59
    • 73949127978 scopus 로고    scopus 로고
    • Tiered categorization of a diverse panel of HIV-1 Env pseudoviruses for assessment of neutralizing antibodies
    • Seaman, M. S. et al. Tiered categorization of a diverse panel of HIV-1 Env pseudoviruses for assessment of neutralizing antibodies. J. Virol. 84, 1439-1452 (2010).
    • (2010) J. Virol. , vol.84 , pp. 1439-1452
    • Seaman, M.S.1
  • 60
    • 63749100579 scopus 로고    scopus 로고
    • A method for identification of HIV gp140 binding memory B cells in human blood
    • Scheid, J. F. et al. A method for identification of HIV gp140 binding memory B cells in human blood. J. Immunol. Methods 343, 65-67 (2009).
    • (2009) J. Immunol. Methods , vol.343 , pp. 65-67
    • Scheid, J.F.1
  • 61
    • 84884991510 scopus 로고    scopus 로고
    • Isolation of human monoclonal antibodies from peripheral blood B cells
    • Huang, J. et al. Isolation of human monoclonal antibodies from peripheral blood B cells. Nat. Protoc. 8, 1907-1915 (2013).
    • (2013) Nat. Protoc. , vol.8 , pp. 1907-1915
    • Huang, J.1
  • 62
    • 84866493348 scopus 로고    scopus 로고
    • Broad and potent neutralization of HIV-1 by a gp41-specific human antibody
    • Huang, J. et al. Broad and potent neutralization of HIV-1 by a gp41-specific human antibody. Nature 491, 406-412 (2012).
    • (2012) Nature , vol.491 , pp. 406-412
    • Huang, J.1
  • 63
    • 0037087319 scopus 로고    scopus 로고
    • A novel approach to the analysis of specificity, clonality, and frequency of HIV-specific T cell responses reveals a potential mechanism for control of viral escape
    • Douek, D. C. et al. A novel approach to the analysis of specificity, clonality, and frequency of HIV-specific T cell responses reveals a potential mechanism for control of viral escape. J. Immunol. 168, 3099-3104 (2002).
    • (2002) J. Immunol. , vol.168 , pp. 3099-3104
    • Douek, D.C.1
  • 64
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura, K. et al. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28, 2731-2739 (2011).
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 2731-2739
    • Tamura, K.1
  • 65
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • Edgar, R. C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32, 1792-1797 (2004).
    • (2004) Nucleic Acids Res. , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 66
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • Altschul, S. F. et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402 (1997).
    • (1997) Nucleic Acids Res. , vol.25 , pp. 3389-3402
    • Altschul, S.F.1
  • 67
    • 55949092569 scopus 로고    scopus 로고
    • IMGT, the International ImMunoGeneTics Information System for Immunoinformatics: Methods for querying IMGT databases, tools, and web resources in the context of immunoinformatics
    • Lefranc, M. P. IMGT, the International ImMunoGeneTics Information System for Immunoinformatics: methods for querying IMGT databases, tools, and web resources in the context of immunoinformatics. Mol. Biotechnol. 40, 101-111 (2008).
    • (2008) Mol. Biotechnol. , vol.40 , pp. 101-111
    • Lefranc, M.P.1
  • 69
    • 77957243284 scopus 로고    scopus 로고
    • RDP3: A flexible and fast computer program for analyzing recombination
    • Martin, D. P. et al. RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics 26, 2462-2463 (2010).
    • (2010) Bioinformatics , vol.26 , pp. 2462-2463
    • Martin, D.P.1
  • 70
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond, A. J. & Rambaut, A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 7, 214 (2007).
    • (2007) BMC Evol. Biol. , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2


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