Reverse Methanogenesis and Respiration in Methanotrophic Archaea

Archaea

Volumn 2017, Issue , 2017, Pages

  Timmers, Peer H A ^a,b,c   Welte, Cornelia U ^c,d   Koehorst, Jasper J ^a   Plugge, Caroline M ^a,b   Jetten, Mike S M ^c,d,e   Stams, Alfons J M ^a,c,f  

^a WAGENINGEN UNIVERSITY   (Netherlands)

^b EUROPEAN CENTRE OF EXCELLENCE FOR SUSTAINABLE WATER TECHNOLOGY   (Netherlands)

^c Soehngen Institute for Anaerobic Microbiology   (Netherlands)

^d RADBOUD UNIVERSITY NIJMEGEN   (Netherlands)

^e DELFT UNIVERSITY OF TECHNOLOGY   (Netherlands)

^f UNIVERSITY OF MINHO   (Portugal)

Author keywords

[No Author keywords available]

Indexed keywords

METHANE;

ANAEROBIC GROWTH; ARCHAEON; METABOLISM; OXIDATION REDUCTION REACTION;

ANAEROBIOSIS; ARCHAEA; METHANE; OXIDATION-REDUCTION;

EID: 85010380148     PISSN: 14723646     EISSN: None     Source Type: Journal    
DOI: 10.1155/2017/1654237     Document Type: Review

References (160)

1. A. Boetius, K. Ravenschlag, C. J. Schubert et al. , "A marine microbial consortium apparently mediating anaerobic oxidation of methane, " Nature, vol. 407, no. 6804, pp. 623-626, 2000.
2. K.-U. Hinrichs, J. M. Hayes, S. P. Sylva, P. G. Brewert, E. F. DeLong, "Methane-consuming archaebacteria in marine sediments, " Nature, vol. 398, no. 6730, pp. 802-805, 1999.
3. V. J. Orphan, C. H. House, K.-U. Hinrichs, K. D. McKeegan, E. F. DeLong, "Methane-consuming archaea revealed by directly coupled isotopic, phylogenetic analysis, " Science, vol. 293, no. 5529, pp. 484-487, 2001.
4. K.-U. Hinrichs, A. Boetius, "The anaerobic oxidation of methane: new insights in microbial ecology, biogeochemistry, " in OceanMargin Systems, G. Wefer, D. Billett, D. Hebbeln, B. B. Jørgensen, M. Schlüter, andT. VanWeering, Eds. , pp. 457-477, Springer, Berlin, Germany, 2002.
5. K. Knittel, T. Lösekann, A. Boetius, R. Kort, R. Amann, "Diversity, distribution of methanotrophic archaea at cold seeps, " Applied, Environmental Microbiology, vol. 71, no. 1, pp. 467-479, 2005.
6. K. Knittel, A. Boetius, "Anaerobic oxidation of methane: progress with an unknown process, " Annual Review of Microbiology, vol. 63, pp. 311-334, 2009.
7. V. J. Orphan, K.-U. Hinrichs, W. Ussler III et al. , "Comparative analysis of methane-oxidizing archaea, sulfate-reducing bacteria in anoxic marine sediments, " Applied, Environmental Microbiology, vol. 67, no. 4, pp. 1922-1934, 2001.
8. T. Lösekann, K. Knittel, T. Nadalig et al. , "Diversity, abundance of aerobic, anaerobic methane oxidizers at the Haakon Mosby Mud Volcano, Barents Sea, " Applied, EnvironmentalMicrobiology, vol. 73, no. 10, pp. 3348-3362, 2007.
9. H. Niemann, T. Lösekann, D. De Beer et al. , "Novel microbial communities of the HaakonMosby mud volcano, their role as amethane sink, " Nature, vol. 443, no. 7113, pp. 854-858, 2006.
10. T. Nunoura, H. Oida, T. Toki, J. Ashi, K. Takai, andK. Horikoshi, "Quantification of mcrA by quantitative fluorescent PCR in sediments from methane seep of the Nankai Trough, " FEMS Microbiology Ecology, vol. 57, no. 1, pp. 149-157, 2006.
11. B. Orcutt, A. Boetius, M. Elvert, V. Samarkin, S. B. Joye, "Molecular biogeochemistry of sulfate reduction, methanogenesis, the anaerobic oxidation of methane at Gulf of Mexico cold seeps, "Geochimica et Cosmochimica Acta, vol. 69, no. 17, pp. 4267-4281, 2005.
12. V. J. Orphan, W. Ussler III, T. H. Naehr, C. H. House, K.-U. Hinrichs, C. K. Paull, "Geological, geochemical, microbiological heterogeneity of the seafloor around methane vents in the Eel River Basin, offshore California, " Chemical Geology, vol. 205, no. 3-4, pp. 265-289, 2004.
13. M. G. Pachiadaki, A. Kallionaki, A. Dählmann, G. J. De Lange, K. A. Kormas, "Diversity, spatial distribution of prokaryotic communities along a sediment vertical profile of a deep-sea mud volcano, " Microbial Ecology, vol. 62, no. 3, pp. 655-668, 2011.
14. I. Roalkvam, H. Dahle, Y. Chen, S. L. Jørgensen, H. Haflidason, I. H. Steen, "Fine-scale community structure analysis of ANME in Nyegga sediments with high, low methane flux, " Frontiers in Microbiology, vol. 3, p. 216, 2012.
15. K. Yanagawa, M. Sunamura, M. A. Lever et al. , "Niche separation of methanotrophic archaea (ANME-1,-2) in methaneseep sediments of the Eastern Japan Sea offshore Joetsu, " Geomicrobiology Journal, vol. 28, no. 2, pp. 118-129, 2011.
16. A. Pernthaler, A. E. Dekas, C. T. Brown, S. K. Goffredi, T. Embaye, V. J. Orphan, "Diverse syntrophic partnerships fromdeep-sea methane vents revealed by direct cell capture, metagenomics, " Proceedings of the National Academy of Sciences of the United States of America, vol. 105, no. 19, pp. 7052-7057, 2008.
17. R. Hatzenpichler, S. A. Connon, D. Goudeau, R. R. Malmstrom, T. Woyke, V. J. Orphan, "Visualizing in situ translational activity for identifying, sorting slow-growing archaeal?bacterial consortia, " Proceedings of the National Academy of Sciences, vol. 113, no. 28, pp. E4069-E4078, 2016.
18. L. Maignien, R. J. Parkes, B. Cragg et al. , "Anaerobic oxidation of methane in hypersaline cold seep sediments, " FEMS Microbiology Ecology, vol. 83, no. 1, pp. 214-231, 2013.
19. V. J. Orphan, C. H. House, K.-U. Hinrichs, K. D. McKeegan, E. F. DeLong, "Multiple archaeal groups mediate methane oxidation in anoxic cold seep sediments, " Proceedings of the National Academy of Sciences of the United States of America, vol. 99, no. 11, pp. 7663-7668, 2002.
20. T. Treude, M. Krüger, A. Boetius, B. B. Jørgensen, "Environmental control on anaerobic oxidation of methane in the gassy sediments of Eckernförde Bay (German Baltic), " Limnology, Oceanography, vol. 50, no. 6, pp. 1771-1786, 2005.
21. G. C. Jagersma, R. J. W. Meulepas, I. Heikamp-De Jong et al. , "Microbial diversity, community structure of a highly active anaerobic methane-oxidizing sulfate-reducing enrichment, " Environmental Microbiology, vol. 11, no. 12, pp. 3223-3232, 2009.
22. M. Blumenberg, R. Seifert, J. Reitner, T. Pape, andW. Michaelis, "Membrane lipid patterns typify distinct anaerobic methanotrophic consortia, " Proceedings of the National Academy of Sciences of the United States of America, vol. 101, no. 30, pp. 11111-11116, 2004.
23. S. Bertram, M. Blumenberg, W. Michaelis, M. Siegert, M. Krüger, R. Seifert, "Methanogenic capabilities of ANMEarchaea deduced from 13C-labelling approaches, " Environmental Microbiology, vol. 15, no. 8, pp. 2384-2393, 2013.
24. K. G. Lloyd, M. J. Alperin, A. Teske, "Environmental evidence for net methane production, oxidation in putative ANaerobic MEthanotrophic (ANME) archaea, " Environmental Microbiology, vol. 13, no. 9, pp. 2548-2564, 2011.
25. M. Takeuchi, H. Yoshioka, Y. Seo et al. , "A distinct freshwateradapted subgroup of ANME-1 dominates active archaeal communities in terrestrial subsurfaces in Japan, " Environmental Microbiology, vol. 13, no. 12, pp. 3206-3218, 2011.
26. R. T. Amos, B. A. Bekins, I. M. Cozzarelli et al. , "Evidence for iron-mediated anaerobic methane oxidation in a crude oilcontaminated aquifer, " Geobiology, vol. 10, no. 6, pp. 506-517, 2012.
27. P. H. Timmers, D. A. Suarez-Zuluaga, M. van Rossem, M. Diender, A. J. Stams, C. M. Plugge, "Anaerobic oxidation of methane associated with sulfate reduction in a natural freshwater gas source, " ISME Journal, vol. 10, pp. 1400-1412, 2015.
28. M. F. Haroon, S. Hu, Y. Shi et al. , "Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage, " Nature, vol. 500, no. 7468, pp. 567-570, 2013.
29. H. J. Mills, C. Hodges, K. Wilson, I. R. MacDonald, P. A. Sobecky, "Microbial diversity in sediments associated with surface-breaching gas hydrate mounds in the Gulf of Mexico, " FEMS Microbiology Ecology, vol. 46, no. 1, pp. 39-52, 2003.
30. K. G. Lloyd, L. Lapham, A. Teske, "An anaerobic methaneoxidizing community of ANME-1b archaea in hypersaline gulf ofMexico sediments, " Applied, EnvironmentalMicrobiology, vol. 72, no. 11, pp. 7218-7230, 2006.
31. A. A. Raghoebarsing, A. Pol, K. T. Van De Pas-Schoonen et al. , "A microbial consortium couples anaerobic methane oxidation to denitrification, " Nature, vol. 440, no. 7086, pp. 918-921, 2006.
32. S. Hu, R. J. Zeng, L. C. Burow, P. Lant, J. Keller, Z. Yuan, "Enrichment of denitrifying anaerobic methane oxidizing microorganisms, " Environmental Microbiology Reports, vol. 1, no. 5, pp. 377-384, 2009.
33. Z.-W. Ding, J. Ding, L. Fu, F. Zhang, R. J. Zeng, "Simultaneous enrichment of denitrifying methanotrophs, anammox bacteria, " Applied Microbiology, Biotechnology, vol. 98, no. 24, pp. 10211-10221, 2014.
34. R. Seifert, K. Nauhaus, M. Blumenberg, M. Krüger, W. Michaelis, "Methane dynamics in a microbial community of the Black Sea traced by stable carbon isotopes in vitro, " Organic Geochemistry, vol. 37, no. 10, pp. 1411-1419, 2006.
35. J. Ding, Z.-W. Ding, L. Fu, Y.-Z. Lu, S. H. Cheng, R. J. Zeng, "New primers for detecting, quantifying denitrifying anaerobic methane oxidation archaea in different ecological niches, " AppliedMicrobiology, Biotechnology, vol. 99, no. 22, pp. 9805-9812, 2015.
36. A. Vaksmaa, C. Lüke, T. van Alen et al. , "Distribution, activity of the anaerobic methanotrophic community in a nitrogenfertilized Italian paddy soil, " FEMS Microbiology Ecology, vol. 92, no. 12, 2016.
37. P. N. Evans, D. H. Parks, G. L. Chadwick et al. , "Methane metabolismin the archaeal phylumBathyarchaeota revealed by genome-centric metagenomics, " Science, vol. 350, no. 6259, pp. 434-438, 2015.
38. I. Vanwonterghem, P. N. Evans, D. H. Parks et al. , "Methylotrophic methanogenesis discovered in the archaeal phylum Verstraetearchaeota, " Nature Microbiology, vol. 1, Article ID 16170, 2016.
39. P. Worm, J. J. Koehorst, M. Visser et al. , "A genomic view on syntrophic versus non-syntrophic lifestyle in anaerobic fatty acid degrading communities, " Biochimica et Biophysica Acta-Bioenergetics, vol. 1837, no. 12, pp. 2004-2016, 2014.
40. R. Stokke, I. Roalkvam, A. Lanzen, H. Haflidason, I. H. Steen, "Integrated metagenomic, metaproteomic analyses of an ANME-1-dominated community in marine cold seep sediments, " EnvironmentalMicrobiology, vol. 14, no. 5, pp. 1333-1346, 2012.
41. A. Meyerdierks, M. Kube, I. Kostadinov et al. , "Metagenome, mRNA expression analyses of anaerobic methanotrophic archaea of the ANME-1 group, " Environmental Microbiology, vol. 12, no. 2, pp. 422-439, 2010.
42. F.-P. Wang, Y. Zhang, Y. Chen et al. , "Methanotrophic archaea possessing diverging methane-oxidizing, electrontransporting pathways, " ISME Journal, vol. 8, no. 5, pp. 1069-1078, 2014.
43. A. Arshad, D. R. Speth, R. M. de Graaf, H. J. Op den Camp, M. S. Jetten, C. U. Welte, "A metagenomics-based metabolic model of nitrate-dependent anaerobic oxidation of methane by Methanoperedens-like archaea, " Frontiers inMicrobiology, vol. 6, article1423, 2015.
44. S. J. Hallam, N. Putnam, C. M. Preston et al. , "Reversemethanogenesis: testing the hypothesis with environmental genomics, " Science, vol. 305, no. 5689, pp. 1457-1462, 2004.
45. R. K. Thauer, "Anaerobic oxidation of methane with sulfate: on the reversibility of the reactions that are catalyzed by enzymes also involved in methanogenesis fromCO2, " Current Opinion in Microbiology, vol. 14, no. 3, pp. 292-299, 2011.
46. U. Deppenmeier, V. Müller, G. Gottschalk, "Pathways of energy conservation in methanogenic archaea, " Archives of Microbiology, vol. 165, no. 3, pp. 149-163, 1996.
47. A.-K. Kaster, J. Moll, K. Parey, R. K. Thauer, "Coupling of ferredoxin, heterodisulfide reduction via electron bifurcation in hydrogenotrophic methanogenic archaea, " Proceedings of the National Academy of Sciences of the United States of America, vol. 108, no. 7, pp. 2981-2986, 2011.
48. R. K. Thauer, A.-K. Kaster, H. Seedorf, W. Buckel, R. Hedderich, "Methanogenic archaea: ecologically relevant differences in energy conservation, " Nature Reviews Microbiology, vol. 6, no. 8, pp. 579-591, 2008.
49. W. Ludwig, O. Strunk, R. Westram et al. , "ARB: a software environment for sequence data, " Nucleic Acids Research, vol. 32, no. 4, pp. 1363-1371, 2004.
50. E. Pruesse, C. Quast, K. Knittel et al. , "SILVA: a comprehensive online resource for quality checked, aligned ribosomal RNA sequence data compatible with ARB, " Nucleic Acids Research, vol. 35, no. 21, pp. 7188-7196, 2007.
51. J. J. Marlow, C. T. Skennerton, Z. Li et al. , "Proteomic stable isotope probing reveals biosynthesis dynamics of slow growing methane based microbial communities, " Frontiers in Microbiology, vol. 7, article 386, 2016.
52. P. V. Welander, W. W. Metcalf, "Loss of the mtr operon in Methanosarcina blocks growth on methanol, but not methanogenesis, reveals an unknown methanogenic pathway, " Proceedings of the National Academy of Sciences of the United States of America, vol. 102, no. 30, pp. 10664-10669, 2005.
53. P. V. Welander, W. W. Metcalf, "Mutagenesis of the C1 oxidation pathway in methanosarcina barkeri: newinsights into the Mtr/Mer bypass pathway, " Journal of Bacteriology, vol. 190, no. 6, pp. 1928-1936, 2008.
54. M. Goenrich, R. K. Thauer, H. Yurimoto, N. Kato, "Formaldehyde activating enzyme (Fae), hexulose-6-phosphate synthase (Hps) inMethanosarcinabarkeri: a possible function in ribose-5-phosphate biosynthesis, " Archives of Microbiology, vol. 184, no. 1, pp. 41-48, 2005.
55. M. Goenrich, F. Mahlert, E. C. Duin, C. Bauer, B. Jaun, R. K. Thauer, "Probing the reactivity ofNi in the active site of methylcoenzyme M reductase with substrate analogues, " Journal of Biological Inorganic Chemistry, vol. 9, no. 6, pp. 691-705, 2004.
56. S. Scheller, M. Goenrich, R. Boecher, R. K. Thauer, B. Jaun, "The key nickel enzyme of methanogenesis catalyses the anaerobic oxidation of methane, " Nature, vol. 465, no. 7298, pp. 606-608, 2010.
57. K. Nauhaus, A. Boetius, M. Krüger, F. Widdel, "In vitro demonstration of anaerobic oxidation of methane coupled to sulphate reduction in sediment froma marine gas hydrate area, " Environmental Microbiology, vol. 4, no. 5, pp. 296-305, 2002.
58. Y. Zhang, J.-P. Henriet, J. Bursens, N. Boon, "Stimulation of in vitro anaerobic oxidation of methane rate in a continuous high-pressure bioreactor, " Bioresource Technology, vol. 101, no. 9, pp. 3132-3138, 2010.
59. M. Krüger, T. Treude, H. Wolters, K. Nauhaus, A. Boetius, "Microbial methane turnover in different marine habitats, " Palaeogeography, Palaeoclimatology, Palaeoecology, vol. 227, no. 1-3, pp. 6-17, 2005.
60. C. Deusner, V. Meyer, T. G. Ferdelman, "High-pressure systems for gas-phase free continuous incubation of enriched marine microbial communities performing anaerobic oxidation of methane, " Biotechnology, Bioengineering, vol. 105, no. 3, pp. 524-533, 2010.
61. K. Nauhaus, T. Treude, A. Boetius, M. Krüger, "Environmental regulation of the anaerobic oxidation of methane: a comparison of ANME-I, ANME-II communities, " Environmental Microbiology, vol. 7, no. 1, pp. 98-106, 2005.
62. T. Treude, V. Orphan, K. Knittel, A. Gieseke, C. H. House, A. Boetius, "Consumption of methane, CO2 by methanotrophic microbial mats fromgas seeps of the anoxic Black Sea, " Applied, EnvironmentalMicrobiology, vol. 73, no. 7, pp. 2271-2283, 2007.
63. T. Holler, F. Widdel, K. Knittel et al. , "Thermophilic anaerobic oxidation of methane by marine microbial consortia, " ISME Journal, vol. 5, no. 12, pp. 1946-1956, 2011.
64. M. Krüger, M. Blumenberg, S. Kasten et al. , "A novel, multilayered methanotrophic microbial mat system growing on the sediment of the Black Sea, " EnvironmentalMicrobiology, vol. 10, no. 8, pp. 1934-1947, 2008.
65. R. J. W. Meulepas, C. G. Jagersma, J. Gieteling, C. J. N. Buisman, A. J. M. Stams, P. N. L. Lens, "Enrichment of anaerobic methanotrophs in sulfate-reducing membrane bioreactors, " Biotechnology, Bioengineering, vol. 104, no. 3, pp. 458-470, 2009.
66. T. Holler, G. Wegener, H. Niemann et al. , "Carbon, sulfur back flux during anaerobic microbial oxidation ofmethane, coupled sulfate reduction, " Proceedings of the National Academy of Sciences of the United States of America, vol. 108, no. 52, pp. E1484-E1490, 2011.
67. M. Krüger, A. Meyerdierks, F. O. Glöckner et al. , "Aconspicuous nickel protein in microbial mats that oxidize methane anaerobically, " Nature, vol. 426, no. 6968, pp. 878-881, 2003.
68. S. Mayr, C. Latkoczy, M. Krüger et al. , "Structure of an F430 variant from archaea associated with anaerobic oxidation of methane, " Journal of the American Chemical Society, vol. 130, no. 32, pp. 10758-10767, 2008.
69. S. Shima, R. K. Thauer, "Methyl-coenzyme M reductase, the anaerobic oxidation of methane in methanotrophic Archaea, " Current Opinion in Microbiology, vol. 8, no. 6, pp. 643-648, 2005.
70. R. K. Thauer, S. Shima, "Methane as fuel for anaerobic microorganisms, " Annals of the New York Academy of Sciences, vol. 1125, pp. 158-170, 2008.
71. S. Yamamoto, J. B. Alcauskas, T. E. Crozier, "Solubility of methane in distilled water, seawater, " Journal of Chemical, Engineering Data, vol. 21, no. 1, pp. 78-80, 1976.
72. P. H. A. Timmers, J. Gieteling, H. C. A. Widjaja-Greefkes et al. , "Growth of anaerobic methane-oxidizing archaea, sulfate-reducing bacteria in a high-pressure membrane capsule bioreactor, "AppliedandEnvironmentalMicrobiology, vol. 81, no. 4, pp. 1286-1296, 2015.
73. M. Krüger, H. Wolters, M. Gehre, S. B. Joye, andH.-H. Richnow, "Tracing the slow growth of anaerobic methane-oxidizing communities by 15N-labelling techniques, " FEMS Microbiology Ecology, vol. 63, no. 3, pp. 401-411, 2008.
74. R. J. W. Meulepas, C. G. Jagersma, A. F. Khadem, C. J. N. Buisman, A. J. M. Stams, P. N. L. Lens, "Effect of environmental conditions on sulfate reduction withmethane as electron donor by an Eckernförde Bay enrichment, " Environmental Science, Technology, vol. 43, no. 17, pp. 6553-6559, 2009.
75. M. W. Bowles, V. A. Samarkin, S. B. Joye, "Improved measurement of microbial activity in deep-sea sediments at in situ pressure, methane concentration, " Limnology, Oceanography: Methods, vol. 9, pp. 499-506, 2011.
76. S. Shima, M. Krueger, T. Weinert et al. , "Structure of a methylcoenzyme M reductase from Black Sea mats that oxidize methane anaerobically, " Nature, vol. 481, no. 7379, pp. 98-101, 2012.
77. K. D. Allen, G. Wegener, R. H. White, "Discovery of multiple modified F-430 coenzymes in methanogens, anaerobic methanotrophic archaea suggests possible new roles for F-430 in nature, " Applied, EnvironmentalMicrobiology, vol. 80, no. 20, pp. 6403-6412, 2014.
78. V. W. Soo, M. J. McAnulty, A. Tripathi et al. , "Reversing methanogenesis to capture methane for liquid biofuel precursors, " Microbial Cell Factories, vol. 15, article 11, 2016.
79. D. L. Valentine, W. S. Reeburgh, "New perspectives on anaerobicmethane oxidation, " EnvironmentalMicrobiology, vol. 2, no. 5, pp. 477-484, 2000.
80. D. L. Valentine, "Biogeochemistry, microbial ecology of methane oxidation in anoxic environments: a review, " Antonie van Leeuwenhoek, International Journal of General andMolecular Microbiology, vol. 81, no. 1-4, pp. 271-282, 2002.
81. A. J. B. Zehnder, T. D. Brock, "Methane formation, methane oxidation by methanogenic bacteria, " Journal of Bacteriology, vol. 137, no. 1, pp. 420-432, 1979.
82. J. Harder, "Anaerobic methane oxidation by bacteria employing 14C-methane uncontaminated with 14C-carbon monoxide, " Marine Geology, vol. 137, no. 1-2, pp. 13-23, 1997.
83. J. J. Moran, C. H. House, K. H. Freeman, J. G. Ferry, "Trace methane oxidation studied in several Euryarchaeota under diverse conditions, " Archaea, vol. 1, no. 5, pp. 303-309, 2005.
84. J. J. Moran, C. H. House, B. Thomas, K. H. Freeman, "Products of tracemethane oxidation during nonmethyltrophic growth by Methanosarcina, " Journal of Geophysical Research: Biogeosciences, vol. 112, no. 2, 2007.
85. R. J. W. Meulepas, C. G. Jagersma, Y. Zhang et al. , "Trace methane oxidation, the methane dependency of sulfate reduction in anaerobic granular sludge, " FEMS Microbiology Ecology, vol. 72, no. 2, pp. 261-271, 2010.
86. A. J. B. Zehnder, T. D. Brock, "Anaerobic methane oxidation: occurrence, ecology, "Applied, Environmental Microbiology, vol. 39, no. 1, pp. 194-204, 1980.
87. S. J. Blazewicz, D. G. Petersen, M. P. Waldrop, M. K. Firestone, "Anaerobic oxidation of methane in tropical, boreal soils: ecological significance in terrestrial methane cycling, " Journal of Geophysical Research: Biogeosciences, vol. 117, no. 2, Article ID G02033, 2012.
88. K. A. Smemo, J. B. Yavitt, "Evidence for anaerobic CH4 oxidation in freshwater peatlands, " Geomicrobiology Journal, vol. 24, no. 7-8, pp. 583-597, 2007.
89. M. J. Alperin, T. M. Hoehler, "Anaerobic methane oxidation by archaea/sulfate-reducing bacteria aggregates: 1. Thermodynamic, physical constraints, " American Journal of Science, vol. 309, no. 10, pp. 869-957, 2009.
90. S. L. Caldwell, J. R. Laidler, E. A. Brewer, J. O. Eberly, S. C. Sandborgh, F. S. Colwell, "Anaerobic oxidation ofmethane: mechanisms, bioenergetics, the ecology of associated microorganisms, " Environmental Science, Technology, vol. 42, no. 18, pp. 6791-6799, 2008.
91. G. Wang, A. J. Spivack, S. D'Hondt, "Gibbs energies of reaction, microbial mutualism in anaerobic deep subseafloor sediments ofODP Site 1226, " Geochimica et Cosmochimica Acta, vol. 74, no. 14, pp. 3938-3947, 2010.
92. P. R. Girguis, A. E. Cozen, E. F. DeLong, "Growth, population dynamics of anaerobic methane-oxidizing archaea, sulfate-reducing bacteria in a continuous-flow bioreactor, " AppliedandEnvironmentalMicrobiology, vol. 71, no. 7, pp. 3725-3733, 2005.
93. K. Nauhaus, M. Albrecht, M. Elvert, A. Boetius, F. Widdel, "In vitro cell growth of marine archaeal-bacterial consortia during anaerobic oxidation ofmethane with sulfate, " Environmental Microbiology, vol. 9, no. 1, pp. 187-196, 2007.
94. B. Orcutt, V. Samarkin, A. Boetius, S. Joye, "On the relationship between methane production, oxidation by anaerobic methanotrophic communities from cold seeps of the Gulf of Mexico, " Environmental Microbiology, vol. 10, no. 5, pp. 1108-1117, 2008.
95. M. Y. Yoshinaga, T. Holler, T. Goldhammer et al. , "Carbon isotope equilibration during sulphate-limited anaerobic oxidation of methane, " Nature Geoscience, vol. 7, no. 3, pp. 190-194, 2014.
96. T. Treude, J. Niggemann, J. Kallmeyer et al. , "Anaerobic oxidation of methane, sulfate reduction along the Chilean continental margin, " Geochimica et Cosmochimica Acta, vol. 69, no. 11, pp. 2767-2779, 2005.
97. R. J. Parkes, B. A. Cragg, N. Banning et al. , "Biogeochemistry, biodiversity of methane cycling in subsurface marine sediments (Skagerrak, Denmark), " EnvironmentalMicrobiology, vol. 9, no. 5, pp. 1146-1161, 2007.
98. N. J. Knab, B. A. Cragg, E. R. C. Hornibrook et al. , "Regulation of anaerobic methane oxidation in sediments of the Black Sea, " Biogeosciences, vol. 6, no. 8, pp. 1505-1518, 2009.
99. H. Yoshioka, A. Maruyama, T. Nakamura et al. , "Activities, distribution of methanogenic, methane-oxidizing microbes in marine sediments from the Cascadia Margin, " Geobiology, vol. 8, no. 3, pp. 223-233, 2010.
100. G. Wegener, V. Krukenberg, S. E. Ruff, M. Y. Kellermann, K. Knittel, "Metabolic capabilities of microorganisms involved in, associated with the anaerobic oxidation of methane, " Frontiers in Microbiology, vol. 7, article 46, 2016.
101. R. J. W. Meulepas, C. G. Jagersma, A. F. Khadem, A. J. M. Stams, P. N. L. Lens, "Effect of methanogenic substrates on anaerobic oxidation of methane, sulfate reduction by an anaerobic methanotrophic enrichment, " Applied Microbiology, Biotechnology, vol. 87, no. 4, pp. 1499-1506, 2010.
102. J. Milucka, T. G. Ferdelman, L. Polerecky et al. , "Zero-valent sulphur is a key intermediate in marine methane oxidation, " Nature, vol. 491, no. 7425, pp. 541-546, 2012.
103. W. Michaelis, R. Seifert, K. Nauhaus et al. , "Microbial reefs in the black sea fueled by anaerobic oxidation ofmethane, " Science, vol. 297, no. 5583, pp. 1013-1015, 2002.
104. A. Vigneron, P. Cruaud, P. Pignet et al. , "Archaeal, anaerobic methane oxidizer communities in the Sonora Margin cold seeps, Guaymas Basin (Gulf of California), " ISME Journal, vol. 7, no. 8, pp. 1595-1608, 2013.
105. M. Alperin, T. Hoehler, "The ongoing mystery of sea-floor methane, " Science, vol. 329, no. 5989, pp. 288-289, 2010.
106. B. Orcutt, C. Meile, "Constraints on mechanisms, rates of anaerobic oxidation of methane by microbial consortia: process-basedmodeling of ANME-2 archaea, sulfate reducing bacteria interactions, " Biogeosciences, vol. 5, no. 6, pp. 1587-1599, 2008.
107. S. E. McGlynn, G. L. Chadwick, C. P. Kempes, andV. J. Orphan, "Single cell activity reveals direct electron transfer in methanotrophic consortia, " Nature, vol. 526, no. 7574, pp. 531-535, 2015.
108. D. R. Lovley, "Electromicrobiology, " Annual Review of Microbiology, vol. 66, pp. 391-409, 2012.
109. S. M. Strycharz-Glaven, R. M. Snider, A. Guiseppi-Elie, L. M. Tender, "On the electrical conductivity of microbial nanowires, biofilms, " Energy, Environmental Science, vol. 4, no. 11, pp. 4366-4379, 2011.
110. D. J. Richardson, J. N. Butt, J. K. Fredrickson et al. , "The 'porin-cytochrome' model for microbe-to-mineral electron transfer, " Molecular Microbiology, vol. 85, no. 2, pp. 201-212, 2012.
111. A. Okamoto, K. Hashimoto, R. Nakamura, "Long-range electron conduction of Shewanella biofilms mediated by outer membrane C-type cytochromes, " Bioelectrochemistry, vol. 85, pp. 61-65, 2012.
112. M. Y. El-Naggar, G. Wanger, K. M. Leung et al. , "Electrical transport along bacterial nanowires from Shewanella oneidensis MR-1, " Proceedings of the National Academy of Sciences of the United States of America, vol. 107, no. 42, pp. 18127-18131, 2010.
113. G. Reguera, K. D. McCarthy, T. Mehta, J. S. Nicoll, M. T. Tuominen, D. R. Lovley, "Extracellular electron transfer via microbial nanowires, " Nature, vol. 435, no. 7045, pp. 1098-1101, 2005.
114. Z. M. Summers, H. E. Fogarty, C. Leang, A. E. Franks, N. S. Malvankar, D. R. Lovley, "Direct exchange of electrons within aggregates of an evolved syntrophic coculture of anaerobic bacteria, " Science, vol. 330, no. 6009, pp. 1413-1415, 2010.
115. A. Kletzin, T. Heimerl, J. Flechsler, L. V. Niftrik, R. Rachel, A. Klingl, "Cytochromes c in archaea: distribution, maturation, cell architecture, the special case of Ignicoccus hospitalis, " Frontiers in Microbiology, vol. 6, article 439, 2015.
116. G. Wegener, V. Krukenberg, D. Riedel, H. E. Tegetmeyer, A. Boetius, "Intercellular wiring enables electron transfer between methanotrophic archaea, bacteria, " Nature, vol. 526, no. 7574, pp. 587-590, 2015.
117. D. H. Haft, S. H. Payne, J. D. Selengut, "Archaeosortases, exosortases are widely distributed systems linking membrane transit with posttranslational modification, " Journal of Bacteriology, vol. 194, no. 1, pp. 36-48, 2012.
118. A. Marchler-Bauer, M. K. Derbyshire, N. R. Gonzales et al. , "CDD: NCBI's conserved domain database, " Nucleic Acids Research, vol. 43, no. 1, pp. D222-D226, 2015.
119. A. Mitchell, H.-Y. Chang, L. Daugherty et al. , "The InterPro protein families database: the classification resource after 15 years, " Nucleic Acids Research, vol. 43, no. 1, pp. D213-D221, 2015.
120. V. Krukenberg, K. Harding, M. Richter et al. , "Candidatus desulfofervidus auxilii, a hydrogenotrophic sulfate-reducing bacterium involved in the thermophilic anaerobic oxidation of methane, " Environmental Microbiology, vol. 18, pp. 3073-3091, 2016.
121. L. Shi, T. C. Squier, J. M. Zachara, J. K. Fredrickson, "Respiration of metal (hydr)oxides by Shewanella, Geobacter: a key role for multihaem c-type cytochromes, " Molecular Microbiology, vol. 65, no. 1, pp. 12-20, 2007.
122. N. S. Malvankar, D. R. Lovley, "Microbial nanowires for bioenergy applications, " Current Opinion in Biotechnology, vol. 27, pp. 88-95, 2014.
123. A.-E. Rotaru, T. L. Woodard, K. P. Nevin, andD. R. Lovley, "Link between capacity for current production, syntrophic growth in Geobacter species, " Frontiers in Microbiology, vol. 6, article 744, 2015.
124. A.-E. Rotaru, P. M. Shrestha, F. Liu et al. , "Direct interspecies electron transfer between Geobacter metallireducens, Methanosarcina barkeri, " Applied, Environmental Microbiology, vol. 80, no. 15, pp. 4599-4605, 2014.
125. S. Scheller, H. Yu, G. L. Chadwick, S. E. McGlynn, V. J. Orphan, "Artificial electron acceptors decouple archaeal methane oxidation from sulfate reduction, " Science, vol. 351, no. 6274, pp. 703-707, 2016.
126. J. Milucka, F. Widdel, S. Shima, "Immunological detection of enzymes for sulfate reduction in anaerobic methaneoxidizing consortia, " Environmental Microbiology, vol. 15, no. 5, pp. 1561-1571, 2013.
127. P. Cabello, M. D. Roldán, C. Moreno-Vivián, "Nitrate reduction, the nitrogen cycle in archaea, " Microbiology, vol. 150, no. 11, pp. 3527-3546, 2004.
128. R. M. Martinez-Espinosa, E. J. Dridge, M. J. Bonete et al. , "Look on the positive side!The orientation, identification, bioenergetics of 'Archaeal'membrane-bound nitrate reductases, " FEMS Microbiology Letters, vol. 276, no. 2, pp. 129-139, 2007.
129. S. deVries, M. Momcilovic, M. J. F. Strampraad, J. P. Whitelegge, A. Baghai, I. Schröder, "Adaptation to a high-tungsten environment: pyrobaculumaerophilumcontains an active tungsten nitrate reductase, " Biochemistry, vol. 49, no. 45, pp. 9911-9921, 2010.
130. M. Egger, O. Rasigraf, C. J. Sapart et al. , "Iron-mediated anaerobic oxidation of methane in brackish coastal sediments, " Environmental Science, Technology, vol. 49, no. 1, pp. 277-283, 2015.
131. T. Treude, S. Krause, J. Maltby, A. W. Dale, R. Coffin, L. J. Hamdan, "Sulfate reduction, methane oxidation activity below the sulfate-methane transition zone in Alaskan Beaufort Sea continental margin sediments: implications for deep sulfur cycling, " Geochimica et Cosmochimica Acta, vol. 144, pp. 217-237, 2014.
132. N. Riedinger, M. J. Formolo, T. W. Lyons, S. Henkel, A. Beck, S. Kasten, "An inorganic geochemical argument for coupled anaerobic oxidation of methane, iron reduction in marine sediments, " Geobiology, vol. 12, no. 2, pp. 172-181, 2014.
133. Y.-H. Chang, T.-W. Cheng, W.-J. Lai et al. , "Microbial methane cycling in a terrestrialmud volcano in eastern Taiwan, " Environmental Microbiology, vol. 14, no. 4, pp. 895-908, 2012.
134. S. A. Crowe, S. Katsev, K. Leslie et al. , "The methane cycle in ferruginous Lake Matano, " Geobiology, vol. 9, no. 1, pp. 61-78, 2011.
135. O. Sivan, M. Adler, A. Pearson et al. , "Geochemical evidence for iron-mediated anaerobic oxidation ofmethane, " Limnology, Oceanography, vol. 56, no. 4, pp. 1536-1544, 2011.
136. K. E. A. Segarra, C. Comerford, J. Slaughter, S. B. Joye, "Impact of electron acceptor availability on the anaerobic oxidation of methane in coastal freshwater, brackish wetland sediments, " Geochimica et Cosmochimica Acta, vol. 115, pp. 15-30, 2013.
137. V. Gupta, K. A. Smemo, J. B. Yavitt, D. Fowle, B. Branfireun, N. Basiliko, "Stable isotopes reveal widespread anaerobic methane oxidation across latitude, peatland type, " Environmental Science, Technology, vol. 47, no. 15, pp. 8273-8279, 2013.
138. O. Oni, T. Miyatake, S. Kasten et al. , "Distinct microbial populations are tightly linked to the profile of dissolved iron in themethanic sediments of theHelgolandmud area, North Sea, " Frontiers in Microbiology, vol. 6, 2015.
139. E. J. Beal, C. H. House, V. J. Orphan, "Manganese-, iron-dependent marine methane oxidation, " Science, vol. 325, no. 5937, pp. 184-187, 2009.
140. M. W. Bowles, V. A. Samarkin, K. M. Bowles, S. B. Joye, "Weak coupling between sulfate reduction, the anaerobic oxidation of methane in methane-rich seafloor sediments during ex situ incubation, " Geochimica et Cosmochimica Acta, vol. 75, no. 2, pp. 500-519, 2011.
141. Y. Z. Lu, L. Fu, J. Ding, Z. Ding, N. Li, R. J. Zeng, "Cr(VI) reduction coupled with anaerobic oxidation of methane in a laboratory reactor, " Water Research, vol. 102, pp. 445-452, 2016.
142. K. F. Ettwig, B. Zhu, D. Speth, J. T. Keltjens, M. S. Jetten, B. Kartal, "Archaea catalyze iron-dependent anaerobic oxidation of methane, " Proceedings of the National Academy of Sciences of the United States of America, vol. 113, no. 45, pp. 12792-12796, 2016.
143. T. M. Flynn, R. A. Sanford, H. Ryu et al. , "Functional microbial diversity explains groundwater chemistry in a pristine aquifer, " BMC Microbiology, vol. 13, no. 1, article no. 146, 2013.
144. C. J. Schubert, F. Vazquez, T. Lösekann-Behrens, K. Knittel, M. Tonolla, A. Boetius, "Evidence for anaerobic oxidation of methane in sediments of a freshwater system (Lago di Cadagno), " FEMS Microbiology Ecology, vol. 76, no. 1, pp. 26-38, 2011.
145. K. E. A. Segarra, F. Schubotz, V. Samarkin, M. Y. Yoshinaga, K.-U. Hinrichs, S. B. Joye, "High rates of anaerobic methane oxidation in freshwater wetlands reduce potential atmospheric methane emissions, " Nature Communications, vol. 6, article 7477, 2015.
146. E. J. Beal, M. W. Claire, C. H. House, "High rates of anaerobic methanotrophy at low sulfate concentrations with implications for past, present methane levels, " Geobiology, vol. 9, no. 2, pp. 131-139, 2011.
147. F. Kracke, I. Vassilev, J. O. Krömer, "Microbial electron transport, energy conservation-the foundation for optimizing bioelectrochemical systems, " Frontiers in Microbiology, vol. 6, article 575, 2015.
148. C. L. Reardon, A. C. Dohnalkova, P. Nachimuthu et al. , "Role of outer-membrane cytochromes MtrC, OmcA in the biomineralization of ferrihydrite by Shewanella oneidensis MR-1, " Geobiology, vol. 8, no. 1, pp. 56-68, 2010.
149. L. Shi, B. Chen, Z. Wang et al. , "Isolation of a high-affinity functional protein complex between OmcA, MtrC: two outer membrane decaheme c-type cytochromes of Shewanella oneidensis MR-1, " Journal of Bacteriology, vol. 188, no. 13, pp. 4705-4714, 2006.
150. X. Qian, T. Mester, L. Morgado et al. , "Biochemical characterization of purified OmcS, a c-type cytochrome required for insoluble Fe(III) reduction in Geobacter sulfurreducens, " Biochimica et BiophysicaActa-Bioenergetics, vol. 1807, no. 4, pp. 404-412, 2011.
151. T. Mehta, M. V. Coppi, S. E. Childers, D. R. Lovley, "Outer membrane c-type cytochromes required for Fe(III) andMn(IV) oxide reduction in Geobacter sulfurreducens, " Applied, EnvironmentalMicrobiology, vol. 71, no. 12, pp. 8634-8641, 2005.
152. W. Blankenfeldt, A. P. Kuzin, T. Skarina et al. , "Structure, function of the phenazine biosynthetic protein PhzF from Pseudomonas fluorescens, " Proceedings of theNationalAcademy of Sciences of the United States of America, vol. 101, no. 47, pp. 16431-16436, 2004.
153. J. F. Parsons, F. Song, L. Parsons, K. Calabrese, E. Eisenstein, J. E. Ladner, "Structure, function of the phenazine biosynthesis protein PhzF fromPseudomonas fluorescens 2-79, " Biochemistry, vol. 43, no. 39, pp. 12427-12435, 2004.
154. T. Hiratsuka, K. Furihata, J. Ishikawa et al. , "An alternative menaquinone biosynthetic pathway operating in microorganisms, " Science, vol. 321, no. 5896, pp. 1670-1673, 2008.
155. M. Tietze, A. Beuchle, I. Lamla et al. , "Redox potentials of methanophenazine, CoB-S-S-CoM, factors involved in electron transport in methanogenic archaea, " ChemBioChem, vol. 4, no. 4, pp. 333-335, 2003.
156. Q. H. Tran, G. Unden, "Changes in the proton potential, the cellular energetics of Escherichia coli during growth by aerobic, anaerobic respiration or by fermentation, " European Journal of Biochemistry, vol. 251, no. 1-2, pp. 538-543, 1998.
157. I. Callebaut, D. Gilgès, I. Vigon, J.-P. Mornon, "HYR, an extracellular module involved in cellular adhesion, related to the immunoglobulin-like fold, " Protein Science, vol. 9, no. 7, pp. 1382-1390, 2000.
158. H. J. Gilbert, "Cellulosomes: microbial nanomachines that display plasticity in quaternary structure, "MolecularMicrobiology, vol. 63, no. 6, pp. 1568-1576, 2007.
159. A. Peer, S. P. Smith, E. A. Bayer, R. Lamed, I. Borovok, "Noncellulosomal cohesin-, dockerin-like modules in the three domains of life, " FEMS Microbiology Letters, vol. 291, no. 1, pp. 1-16, 2009.
160. M. Wagner, "Microbiology: conductive consortia, " Nature, vol. 526, no. 7574, pp. 513-514, 2015.