-
1
-
-
67650430046
-
Manganese- and iron-dependent marine methane oxidation
-
Beal, E. J., House, C. H. & Orphan, V. J. Manganese- and Iron-Dependent Marine Methane Oxidation. Science 325, 184-187 (2009)
-
(2009)
Science
, vol.325
, pp. 184-187
-
-
Beal, E.J.1
House, C.H.2
Orphan, V.J.3
-
2
-
-
18844481026
-
A marine microbial consortium apparently mediating anaerobic oxidation of methane
-
Boetius, A. et al. A marine microbial consortium apparently mediating anaerobic oxidation of methane. Nature 407, 623-626 (2000)
-
(2000)
Nature
, vol.407
, pp. 623-626
-
-
Boetius, A.1
-
3
-
-
77950258771
-
Nitrite-driven anaerobic methane oxidation by oxygenic bacteria
-
Ettwig, K. F. et al. Nitrite-driven anaerobic methane oxidation by oxygenic bacteria. Nature 464, 543-548 (2010)
-
(2010)
Nature
, vol.464
, pp. 543-548
-
-
Ettwig, K.F.1
-
4
-
-
33645876469
-
A microbial consortium couples anaerobic methane oxidation to denitrification
-
Raghoebarsing, A. A. et al. A microbial consortium couples anaerobic methane oxidation to denitrification. Nature 440, 918-921 (2006)
-
(2006)
Nature
, vol.440
, pp. 918-921
-
-
Raghoebarsing, A.A.1
-
5
-
-
77950280112
-
Enrichment of denitrifying anaerobic methane oxidizing microorganisms. Environmental Microbiol
-
Hu, S. et al. Enrichment of denitrifying anaerobic methane oxidizing microorganisms. Environmental Microbiol. Rep. 1, 377-384 (2009)
-
(2009)
Rep.
, vol.1
, pp. 377-384
-
-
Hu, S.1
-
6
-
-
70349559191
-
Anaerobic oxidationofmethane: Progress withanunknown process
-
Knittel, K.& Boetius,A. Anaerobic oxidationofmethane: progress withanunknown process. Annu. Rev. Microbiol. 63, 311-334 (2009)
-
(2009)
Annu. Rev. Microbiol.
, vol.63
, pp. 311-334
-
-
Knittel, K.1
Boetiusa2
-
7
-
-
33847720244
-
Oceanic methane biogeochemistry
-
Reeburgh, W. S. Oceanic Methane Biogeochemistry. Chem. Rev. 107, 486-513 (2007)
-
(2007)
Chem. Rev.
, vol.107
, pp. 486-513
-
-
Reeburgh, W.S.1
-
8
-
-
0141592799
-
Identification of methyl coenzyme M reductase A (mcrA) genes associated with methane-oxidizing archaea
-
Hallam, S. J., Girguis, P. R., Preston, C. M., Richardson, P. M. & DeLong, E. F. Identification of methyl coenzyme M reductase A (mcrA) genes associated with methane-oxidizing archaea. Appl. Environ. Microbiol. 69, 5483-5491 (2003)
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 5483-5491
-
-
Hallam, S.J.1
Girguis, P.R.2
Preston, C.M.3
Richardson, P.M.4
Delong, E.F.5
-
9
-
-
77649174627
-
Metagenome and mRNA expression analyses of anaerobic methanotrophic archaea of the ANME-1 group
-
Meyerdierks, A. et al. Metagenome and mRNA expression analyses of anaerobic methanotrophic archaea of the ANME-1 group. Environ. Microbiol. 12, 422-439 (2010)
-
(2010)
Environ. Microbiol.
, vol.12
, pp. 422-439
-
-
Meyerdierks, A.1
-
10
-
-
84859946336
-
Integrated metagenomicandmetaproteomicanalyses ofanANME-1- dominatedcommunity in marine cold seep sediments
-
Stokke, R., Roalkvam, I., Lanzen, A., Haflidason, H. & Steen, I. H. Integrated metagenomicandmetaproteomicanalyses ofanANME-1-dominatedcommunity in marine cold seep sediments. Environ. Microbiol. 14, 1333-1346 (2012)
-
(2012)
Environ. Microbiol.
, vol.14
, pp. 1333-1346
-
-
Stokke, R.1
Roalkvam, I.2
Lanzen, A.3
Haflidason, H.4
Steen, I.H.5
-
11
-
-
46249128311
-
Immunological localization of coenzyme M reductase in anaerobic methane-oxidizing archaea of ANME 1 and ANME 2 type
-
Heller, C., Hoppert, M. & Reitner, J. Immunological localization of coenzyme M reductase in anaerobic methane-oxidizing archaea of ANME 1 and ANME 2 type. Geomicrobiol. J. 25, 149-156 (2008)
-
(2008)
Geomicrobiol. J.
, vol.25
, pp. 149-156
-
-
Heller, C.1
Hoppert, M.2
Reitner, J.3
-
12
-
-
77953222884
-
The key nickel enzyme of methanogenesis catalyses the anaerobic oxidation of methane
-
Scheller, S., Goenrich, M., Boecher, R., Thauer, R. K. & Jaun, B. The key nickel enzyme of methanogenesis catalyses the anaerobic oxidation of methane. Nature 465, 606-608 (2010)
-
(2010)
Nature
, vol.465
, pp. 606-608
-
-
Scheller, S.1
Goenrich, M.2
Boecher, R.3
Thauer, R.K.4
Jaun, B.5
-
13
-
-
84869882273
-
Zero-valent sulphur is a key intermediate in marine methane oxidation
-
Milucka, J. et al. Zero-valent sulphur is a key intermediate in marine methane oxidation. Nature 491, 541-546 (2012)
-
(2012)
Nature
, vol.491
, pp. 541-546
-
-
Milucka, J.1
-
14
-
-
79955946405
-
Effect of nitrate and nitrite on the selection of microorganisms in the denitrifying anaerobic methane oxidation process
-
Hu, S., Zeng, R. J., Keller, J., Lant, P. A. & Yuan, Z. Effect of nitrate and nitrite on the selection of microorganisms in the denitrifying anaerobic methane oxidation process. Environmental Microbiol. Rep. 3, 315-319 (2011)
-
(2011)
Environmental Microbiol. Rep.
, vol.3
, pp. 315-319
-
-
Hu, S.1
Zeng, R.J.2
Keller, J.3
Lant, P.A.4
Yuan, Z.5
-
15
-
-
33645741019
-
Deciphering the evolution and metabolism of an anammox bacterium from a community genome
-
Strous, M. et al. Deciphering the evolution and metabolism of an anammox bacterium from a community genome. Nature 440, 790-794 (2006)
-
(2006)
Nature
, vol.440
, pp. 790-794
-
-
Strous, M.1
-
16
-
-
77956994607
-
Fixation-free fluorescence in situ hybridization for targeted enrichment of microbial populations
-
Yilmaz, S., Haroon, M. F., Rabkin, B. A., Tyson, G. W. & Hugenholtz, P. Fixation-free fluorescence in situ hybridization for targeted enrichment of microbial populations. ISME J. 4, 1352-1356 (2010)
-
(2010)
ISME J.
, vol.4
, pp. 1352-1356
-
-
Yilmaz, S.1
Haroon, M.F.2
Rabkin, B.A.3
Tyson, G.W.4
Hugenholtz, P.5
-
17
-
-
9144223171
-
Nitrate reduction and the nitrogen cycle in archaea
-
Cabello, P., Roldan, M. D. & Moreno-Vivian, C. Nitrate reduction and the nitrogen cycle in archaea. Microbiology 150, 3527-3546 (2004)
-
(2004)
Microbiology
, vol.150
, pp. 3527-3546
-
-
Cabello, P.1
Roldan, M.D.2
Moreno-Vivian, C.3
-
18
-
-
41349106563
-
-
eds Sariaslani, S., Laskin, A. I. & Geoffrey, M. G. Academic Press
-
Trotsenko, Y. A. & Murrell, J. C. in Advances in Applied Microbiology Vol. 63 (eds Sariaslani, S., Laskin, A. I. & Geoffrey, M. G.) 183-229 (Academic Press, 2008)
-
(2008)
Advances in Applied Microbiology
, vol.63
, pp. 183-229
-
-
Trotsenko, Y.A.1
Murrell, J.C.2
-
19
-
-
12544250488
-
Environmental regulation of the anaerobic oxidation of methane: A comparison of ANME-I and ANME-II communities
-
Nauhaus, K., Treude, T., Boetius, A. & Kruger, M. Environmental regulation of the anaerobic oxidation of methane: a comparison of ANME-I and ANME-II communities. Environ. Microbiol. 7, 98-106 (2005)
-
(2005)
Environ. Microbiol.
, vol.7
, pp. 98-106
-
-
Nauhaus, K.1
Treude, T.2
Boetius, A.3
Kruger, M.4
-
20
-
-
41849084119
-
Onthe relationship betweenmethane production and oxidation by anaerobic methanotrophic communities from cold seeps of the Gulf of Mexico
-
Orcutt, B., Samarkin, V., Boetius, A.& Joye, S.Onthe relationship betweenmethane production and oxidation by anaerobic methanotrophic communities from cold seeps of the Gulf of Mexico. Environ. Microbiol. 10, 1108-1117 (2008)
-
(2008)
Environ. Microbiol.
, vol.10
, pp. 1108-1117
-
-
Orcutt, B.1
Samarkin, V.2
Boetius, A.3
Joye, S.4
-
21
-
-
70350134633
-
Deep-sea archaea fix and share nitrogen in methane-consuming microbial consortia
-
Dekas, A. E., Poretsky, R. S.& Orphan, V. J. Deep-sea archaea fix and share nitrogen in methane-consuming microbial consortia. Science 326, 422-426 (2009)
-
(2009)
Science
, vol.326
, pp. 422-426
-
-
Dekas, A.E.1
Poretsky, R.S.2
Orphan, V.J.3
-
22
-
-
0021089621
-
Reversal of 2-bromoethanesulfonate inhibition of methanogenesis in Methanosarcina sp
-
Smith, M. R. Reversal of 2-bromoethanesulfonate inhibition of methanogenesis in Methanosarcina sp. J. Bacteriol. 156, 516-523 (1983)
-
(1983)
J. Bacteriol.
, vol.156
, pp. 516-523
-
-
Smith, M.R.1
-
23
-
-
51949095627
-
Anaerobic oxidation of methane: Mechanisms, bioenergetics, and the ecology of associated microorganisms
-
Caldwell, S. L. et al. Anaerobic oxidation of methane: mechanisms, bioenergetics, and the ecology of associated microorganisms. Environ. Sci. Technol. 42, 6791-6799 (2008)
-
(2008)
Environ. Sci. Technol.
, vol.42
, pp. 6791-6799
-
-
Caldwell, S.L.1
-
24
-
-
81855187876
-
Simultaneous nitrite-dependent anaerobic methane and ammonium oxidation processes
-
Luesken, F. A. et al. Simultaneous nitrite-dependent anaerobic methane and ammonium oxidation processes. Appl. Environ. Microbiol. 77, 6802-6807 (2011)
-
(2011)
Appl. Environ. Microbiol.
, vol.77
, pp. 6802-6807
-
-
Luesken, F.A.1
-
25
-
-
0024800692
-
Diffusion method to prepare soil extracts for automated nitrogen-15 analysis
-
Brooks, P. D., Stark, J. M., McInteer, B. B. & Preston, T. Diffusion method to prepare soil extracts for automated nitrogen-15 analysis. Soil Sci. Soc. Am. J. 53, 1707-1711 (1989)
-
(1989)
Soil Sci. Soc. Am. J.
, vol.53
, pp. 1707-1711
-
-
Brooks, P.D.1
Stark, J.M.2
McInteer, B.B.3
Preston, T.4
-
26
-
-
73349110099
-
Wrinkles in the rare biosphere: Pyrosequencing errors can lead to artificial inflation of diversity estimates
-
Kunin, V., Engelbrektson, A., Ochman, H. & Hugenholtz, P. Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates. Environ. Microbiol. 12, 118-123 (2010)
-
(2010)
Environ. Microbiol.
, vol.12
, pp. 118-123
-
-
Kunin, V.1
Engelbrektson, A.2
Ochman, H.3
Hugenholtz, P.4
-
27
-
-
0029859085
-
Anin situ hybridization protocol for detection andidentification of planktonic bacteria
-
Glockner, F. O. et al.Anin situ hybridization protocol for detection andidentification of planktonic bacteria. System. Applied Microbiol. 19, 403-406 (1996)
-
(1996)
System. Applied Microbiol.
, vol.19
, pp. 403-406
-
-
Glockner, F.O.1
-
28
-
-
70350015324
-
Community-wide analysis of microbial genome sequence signatures
-
Dick, G. J. et al. Community-wide analysis of microbial genome sequence signatures. Genome Biol. 10, R85 (2009).
-
(2009)
Genome Biol.
, vol.10
-
-
Dick, G.J.1
-
29
-
-
69949116874
-
IMG ER: A system for microbial genome annotation expert review and curation
-
Markowitz, V. M. et al. IMG ER: a system for microbial genome annotation expert review and curation. Bioinformatics 25, 2271-2278 (2009)
-
(2009)
Bioinformatics
, vol.25
, pp. 2271-2278
-
-
Markowitz, V.M.1
-
30
-
-
77954086440
-
Development and quantitative analyses of a universal rRNA-subtraction protocol for microbial metatranscriptomics
-
Stewart, F. J., Ottesen, E. A. & DeLong, E. F. Development and quantitative analyses of a universal rRNA-subtraction protocol for microbial metatranscriptomics. ISME J. 4, 896-907 (2010).
-
(2010)
ISME J.
, vol.4
, pp. 896-907
-
-
Stewart, F.J.1
Ottesen, E.A.2
Delong, E.F.3
-
31
-
-
0035210373
-
16S-23S rDNA intergenic spacer and 23S rDNA of anaerobic ammonium-oxidizing bacteria: Implications for phylogeny and in situ detection
-
Schmid, M., Schmitz-Esser, S., Jetten, M. & Wagner, M. 16S-23S rDNA intergenic spacer and 23S rDNA of anaerobic ammonium-oxidizing bacteria: implications for phylogeny and in situ detection. Environ. Microbiol. 3, 450-459 (2001).
-
(2001)
Environ. Microbiol.
, vol.3
, pp. 450-459
-
-
Schmid, M.1
Schmitz-Esser, S.2
Jetten, M.3
Wagner, M.4
-
32
-
-
0344172842
-
The domain-specific probe EUB338 is insufficient for the detection of all bacteria: Development and evaluation of a more comprehensive probe set
-
Daims, H., Bru hl, A., Amann, R., Schleifer, K.-H. & Wagner, M. The domain-specific probe EUB338 is insufficient for the detection of all bacteria: development and evaluation of a more comprehensive probe set. Systematic Applied Microbiol. 22, 434-444 (1999).
-
(1999)
Systematic Applied Microbiol.
, vol.22
, pp. 434-444
-
-
Daims, H.1
Bruhl, A.2
Amann, R.3
Schleifer, K.-H.4
Wagner, M.5
-
33
-
-
33644868597
-
Daime, a novel image analysis program for microbial ecology and biofilm research
-
Daims, H., Lucker, S. & Wagner, M. Daime, a novel image analysis program for microbial ecology and biofilm research. Environ. Microbiol. 8, 200-213 (2006).
-
(2006)
Environ. Microbiol.
, vol.8
, pp. 200-213
-
-
Daims, H.1
Lucker, S.2
Wagner, M.3
-
34
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso, J. G. et al. QIIME allows analysis of high-throughput community sequencing data. Nature Meth. 7, 335-336 (2010).
-
(2010)
Nature Meth.
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
-
35
-
-
84857122937
-
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
-
McDonald, D. et al. An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. ISME J. 6, 610-618 (2012).
-
(2012)
ISME J.
, vol.6
, pp. 610-618
-
-
McDonald, D.1
-
36
-
-
79961181125
-
UCHIME improves sensitivity and speed of chimera detection
-
Edgar, R. C., Haas, B. J., Clemente, J. C., Quince, C. & Knight, R. UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 27, 2194-2200 (2011).
-
(2011)
Bioinformatics
, vol.27
, pp. 2194-2200
-
-
Edgar, R.C.1
Haas, B.J.2
Clemente, J.C.3
Quince, C.4
Knight, R.5
-
37
-
-
84860353306
-
Fast, accurate errorcorrection of amplicon pyrosequences using Acacia
-
Bragg, L., Stone, G., Imelfort, M., Hugenholtz, P. & Tyson, G. W. Fast, accurate errorcorrection of amplicon pyrosequences using Acacia. Nature Meth. 9, 425-426 (2012).
-
(2012)
Nature Meth.
, vol.9
, pp. 425-426
-
-
Bragg, L.1
Stone, G.2
Imelfort, M.3
Hugenholtz, P.4
Tyson, G.W.5
-
38
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
Edgar, R. C. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26, 2460-2461 (2010).
-
(2010)
Bioinformatics
, vol.26
, pp. 2460-2461
-
-
Edgar, R.C.1
-
39
-
-
84859242353
-
Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2
-
Wu, M. & Scott, A. J. Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2. Bioinformatics 28, 1033-1034 (2012).
-
(2012)
Bioinformatics
, vol.28
, pp. 1033-1034
-
-
Wu, M.1
Scott, A.J.2
-
40
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
41
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
Li, H. et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25, 2078-2079 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
-
42
-
-
2542523843
-
ARB: A software environment for sequence data
-
Ludwig, W. et al.ARB: a software environment for sequence data.Nucleic Acids Res. 32, 1363-1371 (2004).
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1363-1371
-
-
Ludwig, W.1
-
43
-
-
33747827586
-
NAST: A multiple sequence alignment server for comparative analysis of 16S rRNA genes
-
DeSantis, T. Z. et al. NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes. Nucleic Acids Res. 34, W394-W399 (2006).
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Desantis, T.Z.1
-
44
-
-
80055082271
-
Accelerated profile HMM searches
-
Eddy, S. R. Accelerated profile HMM searches. PLOS Comput. Biol. 7, e1002195 (2011).
-
(2011)
PLOS Comput. Biol.
, vol.7
-
-
Eddy, S.R.1
-
45
-
-
77949718257
-
FastTree 2-approximately maximumlikelihood trees for large alignments
-
Price, M. N., Dehal, P. S. & Arkin, A. P. FastTree 2-approximately maximumlikelihood trees for large alignments. PLoS ONE 5, e9490 (2010).
-
(2010)
PLoS ONE
, vol.5
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
-
46
-
-
66149130975
-
Metatranscriptomics reveals unique microbial small RNAs in the ocean/s water column
-
Shi, Y., Tyson, G. W. & DeLong, E. F. Metatranscriptomics reveals unique microbial small RNAs in the ocean/s water column. Nature 459, 266-269 (2009).
-
(2009)
Nature
, vol.459
, pp. 266-269
-
-
Shi, Y.1
Tyson, G.W.2
Delong, E.F.3
-
47
-
-
40949090557
-
Anammox bacteria: From discovery to application
-
Kuenen, J. G. Anammox bacteria: from discovery to application. Nature Rev. Microbiol. 6, 320-326 (2008).
-
(2008)
Nature Rev. Microbiol.
, vol.6
, pp. 320-326
-
-
Kuenen, J.G.1
|