The methane cycle in ferruginous Lake Matano

Geobiology

Volumn 9, Issue 1, 2011, Pages 61-78

  Crowe, S A ^a,b,c   Katsev, S ^a,d   Leslie, K ^b   Sturm, A ^b   Magen, C ^a,c   Nomosatryo, S ^e   Pack, M ^f   Kessler, J D ^g   Reeburgh, W S ^f   Roberts, J A ^b   Gonzalez L ^b   Douglas Haffner, G ^h   Mucci, A ^a,c   Sundby, B ^a,i   Fowle, D A ^b  

^a MCGILL UNIVERSITY   (Canada)

^b UNIVERSITY OF KANSAS   (United States)

^c UNIVERSITÉ DU QUÉBEC À MONTRÉAL   (Canada)

^d UNIVERSITY OF MINNESOTA DULUTH   (United States)

^e INDONESIAN INSTITUTE OF SCIENCES   (Indonesia)

^f UNIVERSITY OF CALIFORNIA   (United States)

^g TEXAS A AND M UNIVERSITY   (United States)

^h UNIVERSITY OF WINDSOR   (Canada)

ⁱ INSTITUT DES SCIENCES DE LA MER DE RIMOUSKI   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

FRESH WATER; IRON; MANGANESE; METHANE; NITRATE; SULFATE;

AUTHIGENESIS; BIODEGRADATION; BOTTOM WATER; CARBON CYCLE; CARBON ISOTOPE; DISSOLVED INORGANIC CARBON; IRON OXIDE; LACUSTRINE DEPOSIT; METHANE; METHANOGENESIS; METHANOTROPHY; OXIDATION; PYCNOCLINE; REDUCTION; THERMODYNAMICS; WATER CHEMISTRY; WATER COLUMN;

ARCHAEBACTERIUM; ARTICLE; BIOGENESIS; CARBON CYCLE; CHEMISTRY; INDONESIA; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; OXIDATION REDUCTION REACTION;

ARCHAEA; BIOGENESIS; CARBON CYCLE; FRESH WATER; INDONESIA; IRON; MANGANESE; METHANE; MOLECULAR SEQUENCE DATA; NITRATES; OXIDATION-REDUCTION; SULFATES;

INDONESIA; LAKE MATANO; MALILI LAKES; SOUTH SULAWESI;

EID: 78049495940     PISSN: 14724677     EISSN: 14724669     Source Type: Journal    
DOI: 10.1111/j.1472-4669.2010.00257.x     Document Type: Article

References (75)

1. Bastviken D, Cole J, Pace M, Tranvik L (2004) Methane emissions from lakes: dependence of lake characteristics, two regional assessments, and a global estimate. Global Biogeochemical Cycles 18, 1-12.
2. 4 emissions. Journal of Geophysical Research-Biogeochemistry 113, 13.
3. Baur ME, Hayes JM, Studley SA, Walter MR (1985) Millimeter-scale variations of stable isotope abundances in carbonates from banded iron-formations in the Hamersley group of Western-Australia. Economic Geology 80, 270-282.
4. Beal EJ, House CH, Orphan VJ (2009) Manganese- and iron-dependent marine methane oxidation. Science 325, 184-187.
5. Becker RH, Clayton RN (1972) Carbon isotopic evidence for origin of a banded iron-formation in Western Australia. Geochimica et Cosmochimica Acta 36, 577-595.
6. Van Bodegom P, Stams F, Mollema L, Boeke S, Leffelaar P (2001) Methane oxidation and the competition for oxygen in the rice rhizosphere. Applied and Environmental Microbiology 67, 3586-3597.
7. Van Bodegom PM, Scholten JCM, Stams AJM (2004) Direct inhibition of methanogenesis by ferric iron. FEMS Microbiology Ecology 49, 261-268.
8. Boetius A, Ravenschlag K, Schubert CJ, Rickert D, Widdel F, Gieseke A, Amann R, Jorgensen BB, Witte U, Pfannkuche O (2000) A marine microbial consortium apparently mediating anaerobic oxidation of methane. Nature 407, 623-626.
9. Brauer SL, Cadillo-Quiroz H, Yashiro E, Yavitt JB, Zinder SH (2006a) Isolation of a novel acidiphilic methanogen from an acidic peat bog. Nature 442, 192-194.
10. 2-utilizing methanogenic enrichment cultures from an acidic peat bog in New York State. FEMS Microbiology Ecology 57, 206-216.
11. Cadillo-Quiroz H, Yavitt JB, Zinder SH (2009) Methanosphaerula palustris gen. nov., sp nov., a hydrogenotrophic methanogen isolated from a minerotrophic fen peatland. International Journal of Systematic and Evolutionary Microbiology 59, 928-935.
12. Caldwell SL, Laidler JR, Brewer EA, Eberly JO, Sandborgh SC, Colwell FS (2008) Anaerobic oxidation of methane: mechanisms, bioenergetics, and the ecology of associated microorganisms. Environmental Science & Technology 42, 6791-6799.
13. Canfield DE, Thamdrup B, Hansen JW (1993) The anaerobic degradation of organic-matter in Danish coastal sediments - iron reduction, manganese reduction, and sulfate reduction. Geochimica et Cosmochimica Acta 57, 3867-3883.
14. Canfield DE, Kristensen E, Thamdrup B (2005) Aquatic Geomicrobiology, Elsevier, San Diego.
15. Canfield DE, Rosing MT, Bjerrum C (2006) Early anaerobic metabolisms. Philosophical Transactions of the Royal Society B-Biological Sciences 361, 1819-1834.
16. Capone DG, Kiene RP (1988) Comparison of microbial dynamics in marine and fresh-water sediments - contrasts in anaerobic carbon catabolism. Limnology and Oceanography 33, 725-749.
17. Crowe SA, Pannalal SJ, Fowle DA, Cioppa MT, Symons DTA, Haffner GD, Fryer BJ, McNeely R, Sundby B, Hehanussa PE (2004) Biogeochemical cycling in Fe-rich sediments from Lake Matano, Indonesia. In 13th International Symposium on Water-Rock Intera (eds Torres-Alvarado IS, Birkle P), Saratoga Springs. USA, pp. 1185-1189.
18. Crowe SA, Jones C, Katsev S, Magen C, O'Neill AH, Sturm A, Canfield DE, Haffner GD, Mucci A, Sundby B, Fowle DA (2008a) Photoferrotrophs thrive in an Archean Ocean analogue. Proceedings of the National Academy of Sciences of the United States of America 105, 15938-15943.
19. Crowe SA, O'Neill AH, Katsev S, Hehanussa P, Haffner GD, Sundby B, Mucci A, Fowle DA (2008b) The biogeochemistry of tropical lakes: a case study from Lake Matano, Indonesia. Limnology and Oceanography 53, 319-331.
20. Delong EF (1992) Archaea in coastal marine environments. Proceedings of the National Academy of Sciences of the United States of America 89, 5685-5689.
21. DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, Keller K, Huber T, Dalevi D, Hu P, Andersen GL (2006) Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Applied and Environmental Microbiology 72, 5069-5072.
22. Diaz RJ, Rosenberg R (1995) Marine benthic hypoxia: a review of its ecological effects and the behavioural responses of benthic macrofauna. Oceanography and Marine Biology 33, 245-303.
23. Eller G, Kanel LK, Kruger M (2005) Cooccurrence of aerobic and anaerobic methane oxidation in the water column of Lake Plusssee. Applied and Environmental Microbiology 71, 8925-8928.
24. Ettwig KF, Shima S, Van De Pas-Schoonen KT, Kahnt J, Medema MH, Op Den Camp HJM, Jetten MSM, Strous M (2008) Denitrifying bacteria anaerobically oxidize methane in the absence of Archaea. Environmental Microbiology 10, 3164-3173.
25. Fowle DA, Crowe SA, O'Neill AH, Haffner GD, Sundby B, Mucci A (2006) Microbial ecology and the link between sediment respiration and sediment-water exchange in Lake Matano. In Symposium on the Malili Lakes Limnology and Ecology (eds Hehanussa PE, Haryani GS, Ridwansyah I). Jakarta, p. 7.
26. Gal'chenko VF (2004) On the problem of anaerobic methane oxidation. Microbiology 73, 599-608.
27. Gieskes JM, Rogers WC (1973) Alkalinity determination in interstitial waters of marine sediments. Journal of Sedimentary Petrology 43, 272-277.
28. Golightly JP (1981) Nickeliferous laterite deposits. Economic Geology 75th Aniversary Volume, 710-735.
29. Guindon S, Gascuel O (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology 52, 696-704.
30. + in marine and fresh-waters. Limnology and Oceanography 37, 1113-1119.
31. Hayes J (1983) Geochemical evidence bearing on the origin of aerobiosis, a speculative hypothesis. In Earth's Earliest Biosphere, its Origin and Evolution (ed. Schopf J). Princeton University Press, Princeton, pp. 291-301.
32. Hinrichs KU, Hayes JM, Sylva SP, Brewer PG, DeLong EF (1999) Methane-consuming archaebacteria in marine sediments. Nature 398, 802-805.
33. Huelsenbeck JP, Ronquist F (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17, 754-755.
34. Imachi H, Sakai S, Sekiguchi Y, Hanada S, Kamagata Y, Ohashi A, Harada H (2008) Methanolinea tarda gen. nov., sp nov., a methane-producing archaeon isolated from a methanogenic digester sludge. International Journal of Systematic and Evolutionary Microbiology 58, 294-301.
35. Iversen N, Oremland RS, Klug MJ (1987) Big Soda Lake (Nevada) .3. pelagic methanogenesis and anaerobic methane oxidation. Limnology and Oceanography 32, 804-814.
36. Jimenez-Lopez C, Romanek CS (2004) Precipitation kinetics and carbon isotope partitioning of inorganic siderite at 25 degrees C and 1 atm. Geochimica et Cosmochimica Acta 68, 557-571.
37. Katsev S, Crowe SA, Mucci A, Sundby B, Nomosatryo S, Haffner GD, Fowle DA (2010) Mixing and its effects on biogeochemistry in the persistently stratified, deep, tropical Lake Matano, Indonesia. Limnology and Oceanography 55, 763-776.
38. Kessler JD, Reeburgh WS (2005) Preparation of natural methane samples for stable isotope and radiocarbon analysis. Limnology and Oceanography-Methods 3, 408-418.
39. King GM, Roslev P, Skovgaard H (1990) Distribution and rate of methane oxidation in sediments of the Florida everglades. Applied and Environmental Microbiology 56, 2902-2911.
40. Knittel K, Boetius A (2009) Anaerobic oxidation of methane: progress with an unknown process. Annual Review of Microbiology 63, 311-334.
41. Konhauser KO, Newman DK, Kappler A (2005) The potential significance of microbial Fe(III) reduction during deposition of Precambrian banded iron formations. Geobiology 3, 167-177.
42. Lane D (1991) S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systemati (eds Stackebrandt E, Debroas D, Fonty G). Wiley, New York, pp. 115-175.
43. Van Der Lee J (1993) CHESS, Another Speciation and Surface Complexation Computer Code. CIG-Ecole des Mines de Paris, Fontainebleau, France.
44. Lehours AC, Bardot C, Thenot A, Debroas D, Fonty G (2005) Anaerobic microbial communities in Lake Pavin, a unique meromictic lake in France. Applied and Environmental Microbiology 71, 7389-7400.
45. Lehours AC, Batisson I, Guedon A, Mailhot G, Fonty G (2009) Diversity of culturable bacteria, from the anaerobic zone of the meromictic Lake Pavin, able to perform dissimilatory-iron reduction in different in vitro conditions. Geomicrobiology Journal 26, 212-223.
46. 2 System Calculations. ORNL/CDIC-105. Carbon Dioxide Information Analysis Center, Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee.
47. Lloyd KG, Lapham L, Teske A (2006) Anaerobic methane-oxidizing community of ANME-1b archaea in hypersaline Gulf of Mexico sediments. Applied and Environmental Microbiology 72, 7218-7230.
48. Luther GW (2005) Manganese(II) oxidation and Mn(IV) reduction in the environment - two one-electron transfer steps versus a single two-electron step. Geomicrobiology Journal 22, 195-203.
49. Luther GW, Glazer B, Ma SF, Trouwborst R, Shultz BR, Druschel G, Kraiya C (2003) Iron and sulfur chemistry in a stratified lake: evidence for iron-rich sulfide complexes. Aquatic Geochemistry 9, 87-110.
50. Martens CS, Albert DB, Alperin MJ (1999) Stable isotope tracing of anaerobic methane oxidation in the gassy sediments of Eckernforde Bay, German Baltic Sea. American Journal of Science 299, 589-610.
51. 2. Biogeochemistry 37, 77-88.
52. Millero FJ, Sotolongo S, Izaguirre M (1987) The oxidation-kinetics of Fe(II) in seawater. Geochimica et Cosmochimica Acta 51, 793-801.
53. 2 and Mn(II) species in aqueous solutions. Geochimica et Cosmochimica Acta 69, 35-48.
54. Nauhaus K, Treude T, Boetius A, Kruger M (2005) Environmental regulation of the anaerobic oxidation of methane: a comparison of ANME-I and ANME-II communities. Environmental Microbiology 7, 98-106.
55. Orphan VJ, House CH, Hinrichs KU, McKeegan KD, DeLong EF (2001) Methane-consuming archaea revealed by directly coupled isotopic and phylogenetic analysis. Science 293, 484-487.
56. Raghoebarsing AA, Pol A, Van De Pas-Schoonen KT, Smolders AJP, Ettwig KF, Rijpstra WIC, Schouten S, Damste JSS, Op den Camp HJM, Jetten MSM, Strous M (2006) A microbial consortium couples anaerobic methane oxidation to denitrification. Nature 440, 918-921.
57. Reeburgh WS (1996) Soft spots in the global methane budget. In Microbial Growth on C1 Compounds (ed. Lidstrom Frt ME). Kluwer Academic, Dordrecht, pp. 334-342.
58. Reeburgh WS (2007) Oceanic methane biogeochemistry. Chemical Reviews 107, 486-513.
59. Reeburgh WS, Ward BB, Whalen SC, Sandbeck KA, Kilpatrick KA, Kerkhof LJ (1991) Black Sea methane geochemistry. Deep-Sea Research 38, S1189-S1210.
60. Roden EE (2003) Fe(III) oxide reactivity toward biological versus chemical reduction. Environmental Science & Technology 37, 1319-1324.
61. Roden EE, Urrutia MM (1999) Ferrous iron removal promotes microbial reduction of crystalline iron(III) oxides. Environmental Science & Technology 33, 1847-1853.
62. Roden EE, Urrutia MM (2002) Influence of biogenic Fe(II) on bacterial crystalline Fe(III) oxide reduction. Geomicrobiology Journal 19, 209-251.
63. Roden EE, Wetzel RG (1996) Organic carbon oxidation and suppression of methane production by microbial Fe(III) oxide reduction in vegetated and unvegetated freshwater wetland sediments. Limnology and Oceanography 41, 1733-1748.
64. Roden EE, Wetzel RG (2003) Competition between Fe(III)-reducing and methanogenic bacteria for acetate in iron-rich freshwater sediments. Microbial Ecology 45, 252-258.
65. Schmid M, Halbwachs M, Wehrli B, Wuest A (2005) Weak mixing in Lake Kivu: new insights indicate increasing risk of uncontrolled gas eruption. Geochemistry Geophysics Geosystems 6, Q07009, 11 pp.
66. Schubert CJ, Coolen MJL, Neretin LN, Schippers A, Abbas B, Durisch-Kaiser E, Wehrli B, Hopmans EC, Damste JSS, Wakeham S, Kuypers MMM (2006) Aerobic and anaerobic methanotrophs in the Black Sea water column. Environmental Microbiology 8, 1844-1856.
67. Strous M, Jetten MSM (2004) Anaerobic oxidation of methane and ammonium. Annual Review of Microbiology 58, 99-117.
68. Stuiver M, Polach HA (1977) Reporting of C-14 data - discussion. Radiocarbon 19, 355-363.
69. Ueno Y, Yamada K, Yoshida N, Maruyama S, Isozaki Y (2006) Evidence from fluid inclusions for microbial methanogenesis in the early Archaean era. Nature 440, 516-519.
70. Vetriani C, Tran HV, Kerkhof LJ (2003) Fingerprinting microbial assemblages from the oxic/anoxic chemocline of the Black Sea. Applied and Environmental Microbiology 69, 6481-6488.
71. Whiticar MJ (1999) Carbon and hydrogen isotope systematics of bacterial formation and oxidation of methane. Chemical Geology 161, 291-314.
72. Wise MG, McArthur JV, Shimkets LJ (1999) Methanotroph diversity in landfill soil: isolation of novel type I and type II methanotrophs whose presence was suggested by culture-independent 16S ribosomal DNA analysis. Applied and Environmental Microbiology 65, 4887-4897.
73. Yao WS, Byrne RH, Waterbury RD (1998) Determination of nanomolar concentrations of nitrite and nitrate in natural waters using long path length absorbance spectroscopy. Environmental Science & Technology 32, 2646-2649.
74. Zehnder AJB, Brock TD (1980) Anaerobic methane oxidation - occurrence and ecology. Applied and Environmental Microbiology 39, 194-204.
75. Zhang YX, Kling GW (2006) Dynamics of lake eruptions and possible ocean eruptions. Annual Review of Earth and Planetary Sciences 34, 293-324.