-
1
-
-
84860171056
-
Transcriptome-wide discovery of circular RNAs in Archaea
-
Danan, M., Schwartz, S., Edelheit, S. & Sorek, R. Transcriptome-wide discovery of circular RNAs in Archaea. Nucleic Acids Res 40, 3131-3142, doi: 10.1093/nar/gkr1009 (2012).
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 3131-3142
-
-
Danan, M.1
Schwartz, S.2
Edelheit, S.3
Sorek, R.4
-
2
-
-
84947437842
-
Transcriptome-wide investigation of circular RNAs in rice
-
Lu, T. et al. Transcriptome-wide investigation of circular RNAs in rice. RNA 21, 2076-2087, doi: 10.1261/rna.052282.115 (2015).
-
(2015)
RNA
, vol.21
, pp. 2076-2087
-
-
Lu, T.1
-
3
-
-
84875369248
-
Circular RNAs are a large class of animal RNAs with regulatory potency
-
Memczak, S. et al. Circular RNAs are a large class of animal RNAs with regulatory potency. Nature 495, 333-338, doi: 10.1038/nature11928 (2013).
-
(2013)
Nature
, vol.495
, pp. 333-338
-
-
Memczak, S.1
-
4
-
-
84863045982
-
Circular RNAs are the predominant transcript isoform from hundreds of human genes in diverse cell types
-
Salzman, J., Gawad, C., Wang, P. L., Lacayo, N. & Brown, P. O. Circular RNAs are the predominant transcript isoform from hundreds of human genes in diverse cell types. PLoS One 7, e30733, doi: 10.1371/journal.pone.0030733 (2012).
-
(2012)
PLoS One
, vol.7
-
-
Salzman, J.1
Gawad, C.2
Wang, P.L.3
Lacayo, N.4
Brown, P.O.5
-
5
-
-
84911491114
-
Circular RNAs: Diversity of form and function
-
Lasda, E. & Parker, R. Circular RNAs: diversity of form and function. RNA 20, 1829-1842, doi: 10.1261/rna.047126.114 (2014).
-
(2014)
RNA
, vol.20
, pp. 1829-1842
-
-
Lasda, E.1
Parker, R.2
-
6
-
-
84915820022
-
Genome-wide analysis of drosophila circular RNAs reveals their structural and sequence properties and agedependent neural accumulation
-
Westholm, J. O. et al. Genome-wide analysis of drosophila circular RNAs reveals their structural and sequence properties and agedependent neural accumulation. Cell Rep 9, 1966-1980, doi: 10.1016/j.celrep.2014.10.062 (2014).
-
(2014)
Cell Rep
, vol.9
, pp. 1966-1980
-
-
Westholm, J.O.1
-
7
-
-
84939419124
-
Circular RNAs in the mammalian brain are highly abundant, conserved, and dynamically expressed
-
Rybak-Wolf, A. et al. Circular RNAs in the Mammalian Brain Are Highly Abundant, Conserved, and Dynamically Expressed. Mol Cell 58, 870-885, doi: 10.1016/j.molcel.2015.03.027 (2015).
-
(2015)
Mol Cell
, vol.58
, pp. 870-885
-
-
Rybak-Wolf, A.1
-
8
-
-
84933041690
-
Statistically based splicing detection reveals neural enrichment and tissue-specific induction of circular RNA during human fetal development
-
Szabo, L. et al. Statistically based splicing detection reveals neural enrichment and tissue-specific induction of circular RNA during human fetal development. Genome Biol 16, 126, doi: 10.1186/s13059-015-0690-5 (2015).
-
(2015)
Genome Biol
, vol.16
, pp. 126
-
-
Szabo, L.1
-
9
-
-
84946544407
-
Spatio-temporal regulation of circular RNA expression during porcine embryonic brain development
-
Veno, M. T. et al. Spatio-temporal regulation of circular RNA expression during porcine embryonic brain development. Genome Biol 16, 245, doi: 10.1186/s13059-015-0801-3 (2015).
-
(2015)
Genome Biol
, vol.16
, pp. 245
-
-
Veno, M.T.1
-
10
-
-
84925773568
-
Neural circular RNAs are derived from synaptic genes and regulated by development and plasticity
-
You, X. et al. Neural circular RNAs are derived from synaptic genes and regulated by development and plasticity. Nat Neurosci 18, 603-610, doi: 10.1038/nn.3975 (2015).
-
(2015)
Nat Neurosci
, vol.18
, pp. 603-610
-
-
You, X.1
-
11
-
-
84875372911
-
Natural RNA circles function as efficient microRNA sponges
-
Hansen, T. B. et al. Natural RNA circles function as efficient microRNA sponges. Nature 495, 384-388, doi: 10.1038/nature11993 (2013).
-
(2013)
Nature
, vol.495
, pp. 384-388
-
-
Hansen, T.B.1
-
12
-
-
84987657380
-
A circular RNA protects the heart from pathological hypertrophy and heart failure by targeting miR-223
-
Wang, K. et al. A circular RNA protects the heart from pathological hypertrophy and heart failure by targeting miR-223. Eur Heart J, doi: 10.1093/eurheartj/ehv713 (2016).
-
(2016)
Eur Heart J
-
-
Wang, K.1
-
13
-
-
84964355812
-
Circular RNA profiling reveals an abundant circHIPK3 that regulates cell growth by sponging multiple miRNAs
-
Zheng, Q. et al. Circular RNA profiling reveals an abundant circHIPK3 that regulates cell growth by sponging multiple miRNAs. Nat Commun 7, 11215, doi: 10.1038/ncomms11215 (2016).
-
(2016)
Nat Commun
, vol.7
, pp. 11215
-
-
Zheng, Q.1
-
14
-
-
84956906428
-
Expanded identification and characterization of mammalian circular RNAs
-
Guo, J. U., Agarwal, V., Guo, H. & Bartel, D. P. Expanded identification and characterization of mammalian circular RNAs. Genome Biol 15, 409, doi: 10.1186/s13059-014-0409-z (2014).
-
(2014)
Genome Biol
, vol.15
, pp. 409
-
-
Guo, J.U.1
Agarwal, V.2
Guo, H.3
Bartel, D.P.4
-
15
-
-
84911476411
-
CircRNA biogenesis competes with pre-mRNA splicing
-
Ashwal-Fluss, R. et al. circRNA biogenesis competes with pre-mRNA splicing. Mol Cell 56, 55-66, doi: 10.1016/j.molcel.2014.08.019 (2014).
-
(2014)
Mol Cell
, vol.56
, pp. 55-66
-
-
Ashwal-Fluss, R.1
-
16
-
-
85019505040
-
Foxo3 circular RNA promotes cardiac senescence by modulating multiple factors associated with stress and senescence responses
-
Du, W. W. et al. Foxo3 circular RNA promotes cardiac senescence by modulating multiple factors associated with stress and senescence responses. Eur Heart J, doi: 10.1093/eurheartj/ehw001 (2016).
-
(2016)
Eur Heart J
-
-
Du, W.W.1
-
17
-
-
84961687529
-
Foxo3 circular RNA retards cell cycle progression via forming ternary complexes with p21 and CDK2
-
Du, W. W. et al. Foxo3 circular RNA retards cell cycle progression via forming ternary complexes with p21 and CDK2. Nucleic Acids Res 44, 2846-2858, doi: 10.1093/nar/gkw027 (2016).
-
(2016)
Nucleic Acids Res
, vol.44
, pp. 2846-2858
-
-
Du, W.W.1
-
18
-
-
84962073617
-
Oncogenic role of fusion-circRNAs derived from cancer-associated chromosomal translocations
-
Guarnerio, J. et al. Oncogenic Role of Fusion-circRNAs Derived from Cancer-Associated Chromosomal Translocations. Cell 165, 289-302, doi: 10.1016/j.cell.2016.03.020 (2016).
-
(2016)
Cell
, vol.165
, pp. 289-302
-
-
Guarnerio, J.1
-
19
-
-
84872531655
-
Circular RNAs are abundant, conserved, and associated with ALU repeats
-
Jeck, W. R. et al. Circular RNAs are abundant, conserved, and associated with ALU repeats. RNA 19, 141-157, doi: 10.1261/rna.035667.112 (2013).
-
(2013)
RNA
, vol.19
, pp. 141-157
-
-
Jeck, W.R.1
-
20
-
-
84924599473
-
The RNA binding protein quaking regulates formation of circRNAs
-
Conn, S. J. et al. The RNA binding protein quaking regulates formation of circRNAs. Cell 160, 1125-1134, doi: 10.1016/j. cell.2015.02.014 (2015).
-
(2015)
Cell
, vol.160
, pp. 1125-1134
-
-
Conn, S.J.1
-
21
-
-
80052803450
-
Human aging is characterized by focused changes in gene expression and deregulation of alternative splicing
-
Harries, L. W. et al. Human aging is characterized by focused changes in gene expression and deregulation of alternative splicing. Aging Cell 10, 868-878, doi: 10.1111/j.1474-9726.2011.00726.x (2011).
-
(2011)
Aging Cell
, vol.10
, pp. 868-878
-
-
Harries, L.W.1
-
22
-
-
84873810442
-
Widespread splicing changes in human brain development and aging
-
Mazin, P. et al. Widespread splicing changes in human brain development and aging. Mol Syst Biol 9, 633, doi: 10.1038/msb.2012.67 (2013).
-
(2013)
Mol Syst Biol
, vol.9
, pp. 633
-
-
Mazin, P.1
-
23
-
-
80053529549
-
Analysis of alternative splicing associated with aging and neurodegeneration in the human brain
-
Tollervey, J. R. et al. Analysis of alternative splicing associated with aging and neurodegeneration in the human brain. Genome Res 21, 1572-1582, doi: 10.1101/gr.122226.111 (2011).
-
(2011)
Genome Res
, vol.21
, pp. 1572-1582
-
-
Tollervey, J.R.1
-
24
-
-
84927539588
-
De-regulation of gene expression and alternative splicing affects distinct cellular pathways in the aging hippocampus
-
Stilling, R. M. et al. De-regulation of gene expression and alternative splicing affects distinct cellular pathways in the aging hippocampus. Front Cell Neurosci 8, 373, doi: 10.3389/fncel.2014.00373 (2014).
-
(2014)
Front Cell Neurosci
, vol.8
, pp. 373
-
-
Stilling, R.M.1
-
25
-
-
84959933210
-
Global genome splicing analysis reveals an increased number of alternatively spliced genes with aging
-
Rodriguez, S. A. et al. Global genome splicing analysis reveals an increased number of alternatively spliced genes with aging. Aging Cell 15, 267-278, doi: 10.1111/acel.12433 (2016).
-
(2016)
Aging Cell
, vol.15
, pp. 267-278
-
-
Rodriguez, S.A.1
-
26
-
-
84884566546
-
Circular intronic long noncoding RNAs
-
Zhang, Y. et al. Circular intronic long noncoding RNAs. Mol Cell 51, 792-806, doi: 10.1016/j.molcel.2013.08.017 (2013).
-
(2013)
Mol Cell
, vol.51
, pp. 792-806
-
-
Zhang, Y.1
-
27
-
-
84975487872
-
Role of bassoon and piccolo in assembly and molecular organization of the active zone
-
Gundelfinger, E. D., Reissner, C. & Garner, C. C. Role of Bassoon and Piccolo in Assembly and Molecular Organization of the Active Zone. Front Synaptic Neurosci 7, 19, doi: 10.3389/fnsyn.2015.00019 (2015).
-
(2015)
Front Synaptic Neurosci
, vol.7
, pp. 19
-
-
Gundelfinger, E.D.1
Reissner, C.2
Garner, C.C.3
-
28
-
-
84994052312
-
Synaptic vesicle proteins and active zone plasticity
-
Kittel, R. J. & Heckmann, M. Synaptic Vesicle Proteins and Active Zone Plasticity. Front Synaptic Neurosci 8, 8, doi: 10.3389/fnsyn.2016.00008 (2016).
-
(2016)
Front Synaptic Neurosci
, vol.8
, pp. 8
-
-
Kittel, R.J.1
Heckmann, M.2
-
29
-
-
84863856685
-
RIM genes differentially contribute to organizing presynaptic release sites
-
Kaeser, P. S., Deng, L., Fan, M. & Sudhof, T. C. RIM genes differentially contribute to organizing presynaptic release sites. Proc Natl Acad Sci USA 109, 11830-11835, doi: 10.1073/pnas.1209318109 (2012).
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 11830-11835
-
-
Kaeser, P.S.1
Deng, L.2
Fan, M.3
Sudhof, T.C.4
-
30
-
-
84894273224
-
The role of reticulons in neurodegenerative diseases
-
Chiurchiu, V., Maccarrone, M. & Orlacchio, A. The role of reticulons in neurodegenerative diseases. Neuromolecular Med 16, 3-15, doi: 10.1007/s12017-013-8271-9 (2014).
-
(2014)
Neuromolecular Med
, vol.16
, pp. 3-15
-
-
Chiurchiu, V.1
Maccarrone, M.2
Orlacchio, A.3
-
31
-
-
84940502214
-
Predicting effective microRNA target sites in mammalian mRNAs
-
Agarwal, V., Bell, G. W., Nam, J. W. & Bartel, D. P. Predicting effective microRNA target sites in mammalian mRNAs. Elife 4, doi: 10.7554/eLife.05005 (2015).
-
(2015)
Elife
, vol.4
-
-
Agarwal, V.1
Bell, G.W.2
Nam, J.W.3
Bartel, D.P.4
-
32
-
-
84888423969
-
MiR-9: A versatile regulator of neurogenesis
-
Coolen, M., Katz, S. & Bally-Cuif, L. miR-9: a versatile regulator of neurogenesis. Front Cell Neurosci 7, 220, doi: 10.3389/fncel.2013.00220 (2013).
-
(2013)
Front Cell Neurosci
, vol.7
, pp. 220
-
-
Coolen, M.1
Katz, S.2
Bally-Cuif, L.3
-
33
-
-
84929603704
-
An updated role of microRNA-124 in central nervous system disorders: A review
-
Sun, Y., Luo, Z. M., Guo, X. M., Su, D. F. & Liu, X. An updated role of microRNA-124 in central nervous system disorders: a review. Front Cell Neurosci 9, 193, doi: 10.3389/fncel.2015.00193 (2015).
-
(2015)
Front Cell Neurosci
, vol.9
, pp. 193
-
-
Sun, Y.1
Luo, Z.M.2
Guo, X.M.3
Su, D.F.4
Liu, X.5
-
34
-
-
84859885816
-
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
-
Trapnell, C. et al. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat Protoc 7, 562-578, doi: 10.1038/nprot.2012.016 (2012).
-
(2012)
Nat Protoc
, vol.7
, pp. 562-578
-
-
Trapnell, C.1
-
35
-
-
2542637241
-
Altered hippocampal transcript profile accompanies an age-related spatial memory deficit in mice
-
Verbitsky, M. et al. Altered hippocampal transcript profile accompanies an age-related spatial memory deficit in mice. Learn Mem 11, 253-260, doi: 10.1101/lm.68204 (2004).
-
(2004)
Learn Mem
, vol.11
, pp. 253-260
-
-
Verbitsky, M.1
-
36
-
-
84858702953
-
The ageing cortical synapse: Hallmarks and implications for cognitive decline
-
Morrison, J. H. & Baxter, M. G. The ageing cortical synapse: hallmarks and implications for cognitive decline. Nat Rev Neurosci 13, 240-250, doi: 10.1038/nrn3200 (2012).
-
(2012)
Nat Rev Neurosci
, vol.13
, pp. 240-250
-
-
Morrison, J.H.1
Baxter, M.G.2
-
37
-
-
63549135460
-
Meta-analysis of age-related gene expression profiles identifies common signatures of aging
-
de Magalhaes, J. P., Curado, J. & Church, G. M. Meta-analysis of age-related gene expression profiles identifies common signatures of aging. Bioinformatics 25, 875-881, doi: 10.1093/bioinformatics/btp073 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 875-881
-
-
De Magalhaes, J.P.1
Curado, J.2
Church, G.M.3
-
38
-
-
37249049422
-
AGEMAP: A gene expression database for aging in mice
-
Zahn, J. M. et al. AGEMAP: a gene expression database for aging in mice. PLoS Genet 3, e201, doi: 10.1371/journal.pgen.0030201 (2007).
-
(2007)
PLoS Genet
, vol.3
, pp. e201
-
-
Zahn, J.M.1
-
39
-
-
84880569773
-
Whole transcriptome sequencing of the aging rat brain reveals dynamic RNA changes in the dark matter of the genome
-
Wood, S. H., Craig, T., Li, Y., Merry, B. & de Magalhaes, J. P. Whole transcriptome sequencing of the aging rat brain reveals dynamic RNA changes in the dark matter of the genome. Age (Dordr) 35, 763-776, doi: 10.1007/s11357-012-9410-1 (2013).
-
(2013)
Age (Dordr)
, vol.35
, pp. 763-776
-
-
Wood, S.H.1
Craig, T.2
Li, Y.3
Merry, B.4
De Magalhaes, J.P.5
-
40
-
-
84923102600
-
Correlation of circular RNA abundance with proliferation-exemplified with colorectal and ovarian cancer, idiopathic lung fibrosis, and normal human tissues
-
Bachmayr-Heyda, A. et al. Correlation of circular RNA abundance with proliferation-exemplified with colorectal and ovarian cancer, idiopathic lung fibrosis, and normal human tissues. Sci Rep 5, 8057, doi: 10.1038/srep08057 (2015).
-
(2015)
Sci Rep
, vol.5
, pp. 8057
-
-
Bachmayr-Heyda, A.1
-
41
-
-
84969983900
-
Circular RNA profile in gliomas revealed by identification tool UROBORUS
-
Song, X. et al. Circular RNA profile in gliomas revealed by identification tool UROBORUS. Nucleic Acids Res, doi: 10.1093/nar/gkw075 (2016).
-
(2016)
Nucleic Acids Res
-
-
Song, X.1
-
42
-
-
84949976433
-
Circular RNAs in monkey muscle: Age-dependent changes
-
Abdelmohsen, K. et al. Circular RNAs in monkey muscle: age-dependent changes. Aging (Albany NY) 7, 903-910 (2015).
-
(2015)
Aging (Albany NY)
, vol.7
, pp. 903-910
-
-
Abdelmohsen, K.1
-
43
-
-
85008892941
-
Gene expression signatures of human cell and tissue longevity
-
Seim, I., Ma, S. & Gladyshev, V. N. Gene expression signatures of human cell and tissue longevity. Npj Aging And Mechanisms Of Disease 2, 16014, doi: 10.1038/npjamd.2016.14 (2016).
-
(2016)
Npj Aging and Mechanisms of Disease
, vol.2
, pp. 16014
-
-
Seim, I.1
Ma, S.2
Gladyshev, V.N.3
-
44
-
-
84906901689
-
An RNA-sequencing transcriptome and splicing database of glia, neurons, and vascular cells of the cerebral cortex
-
Zhang, Y. et al. An RNA-sequencing transcriptome and splicing database of glia, neurons, and vascular cells of the cerebral cortex. J Neurosci 34, 11929-11947, doi: 10.1523/JNEUROSCI.1860-14.2014 (2014).
-
(2014)
J Neurosci
, vol.34
, pp. 11929-11947
-
-
Zhang, Y.1
-
45
-
-
84944768846
-
Combinatorial control of Drosophila circular RNA expression by intronic repeats, hnRNPs, and SR proteins
-
Kramer, M. C. et al. Combinatorial control of Drosophila circular RNA expression by intronic repeats, hnRNPs, and SR proteins. Genes Dev 29, 2168-2182, doi: 10.1101/gad.270421.115 (2015).
-
(2015)
Genes Dev
, vol.29
, pp. 2168-2182
-
-
Kramer, M.C.1
-
46
-
-
44349118767
-
Human ApoD, an apolipoprotein up-regulated in neurodegenerative diseases, extends lifespan and increases stress resistance in Drosophila
-
Muffat, J., Walker, D. W. & Benzer, S. Human ApoD, an apolipoprotein up-regulated in neurodegenerative diseases, extends lifespan and increases stress resistance in Drosophila. Proc Natl Acad Sci USA 105, 7088-7093, doi: 10.1073/pnas.0800896105 (2008).
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 7088-7093
-
-
Muffat, J.1
Walker, D.W.2
Benzer, S.3
-
47
-
-
33847169447
-
Protection of cells from oxidative stress by microsomal glutathione transferase 1
-
Siritantikorn, A. et al. Protection of cells from oxidative stress by microsomal glutathione transferase 1. Biochem Biophys Res Commun 355, 592-596, doi: 10.1016/j.bbrc.2007.02.018 (2007).
-
(2007)
Biochem Biophys Res Commun
, vol.355
, pp. 592-596
-
-
Siritantikorn, A.1
-
48
-
-
61549117497
-
Incidence and remaining lifetime risk of Parkinson disease in advanced age
-
Driver, J. A., Logroscino, G., Gaziano, J. M. & Kurth, T. Incidence and remaining lifetime risk of Parkinson disease in advanced age. Neurology 72, 432-438, doi: 10.1212/01.wnl.0000341769.50075.bb (2009).
-
(2009)
Neurology
, vol.72
, pp. 432-438
-
-
Driver, J.A.1
Logroscino, G.2
Gaziano, J.M.3
Kurth, T.4
-
49
-
-
0031467629
-
Lifetime risk of dementia and Alzheimer's disease. The impact of mortality on risk estimates in the Framingham Study
-
Seshadri, S. et al. Lifetime risk of dementia and Alzheimer's disease. The impact of mortality on risk estimates in the Framingham Study. Neurology 49, 1498-1504 (1997).
-
(1997)
Neurology
, vol.49
, pp. 1498-1504
-
-
Seshadri, S.1
-
50
-
-
84949227547
-
BEDTools: The swiss-army tool for genome feature analysis
-
11-34
-
Quinlan, A. R. BEDTools: The Swiss-Army Tool for Genome Feature Analysis. Curr Protoc Bioinformatics 47, 11 12 11-34, doi: 10.1002/0471250953.bi1112s47 (2014).
-
(2014)
Curr Protoc Bioinformatics
, vol.47
, pp. 11-12
-
-
Quinlan, A.R.1
-
51
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
Langmead, B. & Salzberg, S. L. Fast gapped-read alignment with Bowtie 2. Nat Methods 9, 357-359, doi: 10.1038/nmeth.1923 (2012).
-
(2012)
Nat Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
52
-
-
84897397058
-
FeatureCounts: An efficient general purpose program for assigning sequence reads to genomic features
-
Liao, Y., Smyth, G. K. & Shi, W. featureCounts: an efficient general purpose program for assigning sequence reads to genomic features. Bioinformatics 30, 923-930, doi: 10.1093/bioinformatics/btt656 (2014).
-
(2014)
Bioinformatics
, vol.30
, pp. 923-930
-
-
Liao, Y.1
Smyth, G.K.2
Shi, W.3
|