메뉴 건너뛰기




Volumn 5, Issue , 2015, Pages 8057-

Correlation of circular RNA abundance with proliferation - Exemplified with colorectal and ovarian cancer, idiopathic lung fibrosis, and normal human tissues

Author keywords

[No Author keywords available]

Indexed keywords

EXORIBONUCLEASE; RIBONUCLEASE R; RNA; RNA, CIRCULAR;

EID: 84923102600     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep08057     Document Type: Article
Times cited : (654)

References (30)
  • 1
    • 0025976493 scopus 로고
    • Scrambled exons
    • Nigro, J. M. et al. Scrambled exons. Cell 64, 607-613 (1991).
    • (1991) Cell , vol.64 , pp. 607-613
    • Nigro, J.M.1
  • 2
    • 84872531655 scopus 로고    scopus 로고
    • Circular RNAs are abundant, conserved, and associated with ALU repeats
    • Jeck, W. R. et al. Circular RNAs are abundant, conserved, and associated with ALU repeats. RNA 19, 141-157 (2013).
    • (2013) RNA , vol.19 , pp. 141-157
    • Jeck, W.R.1
  • 3
    • 84875369248 scopus 로고    scopus 로고
    • Circular RNAs are a large class of animal RNAs with regulatory potency
    • Memczak, S. et al. Circular RNAs are a large class of animal RNAs with regulatory potency. Nature 495, 333-338 (2013).
    • (2013) Nature , vol.495 , pp. 333-338
    • Memczak, S.1
  • 4
    • 84863045982 scopus 로고    scopus 로고
    • Circular RNAs are the predominant transcript isoform from hundreds of human genes in diverse cell types
    • Salzman, J., Gawad, C.,Wang, P. L., Lacayo, N. & Brown, P. O. Circular RNAs are the predominant transcript isoform from hundreds of human genes in diverse cell types. PLoS One 7, e30733 (2012).
    • (2012) PLoS One , vol.7
    • Salzman, J.1    Gawad, C.2    Wang, P.L.3    Lacayo, N.4    Brown, P.O.5
  • 5
    • 84875372911 scopus 로고    scopus 로고
    • Natural RNA circles function as efficient microRNA sponges
    • Hansen, T. B. et al. Natural RNA circles function as efficient microRNA sponges. Nature 495, 384-388 (2013).
    • (2013) Nature , vol.495 , pp. 384-388
    • Hansen, T.B.1
  • 7
    • 84956906428 scopus 로고    scopus 로고
    • Expanded identification and characterization of mammalian circular RNAs
    • Guo, J. U., Agarwal, V., Guo, H. & Bartel, D. P. Expanded identification and characterization of mammalian circular RNAs. Genome Biol 15, 409 (2014).
    • (2014) Genome Biol , vol.15 , pp. 409
    • Guo, J.U.1    Agarwal, V.2    Guo, H.3    Bartel, D.P.4
  • 8
    • 84884566546 scopus 로고    scopus 로고
    • Circular intronic long noncoding RNAs
    • Zhang, Y. et al. Circular intronic long noncoding RNAs. Mol Cell 51, 792-806 (2013).
    • (2013) Mol Cell , vol.51 , pp. 792-806
    • Zhang, Y.1
  • 9
    • 84911476411 scopus 로고    scopus 로고
    • circRNA Biogenesis Competes with Pre-mRNA Splicing
    • Ashwal-Fluss, R. et al. circRNA Biogenesis Competes with Pre-mRNA Splicing. Mol Cell 56, 55-66 (2014).
    • (2014) Mol Cell , vol.56 , pp. 55-66
    • Ashwal-Fluss, R.1
  • 11
    • 84891818318 scopus 로고    scopus 로고
    • miRBase: Annotating high confidence microRNAs using deep sequencing data
    • Kozomara, A. & Griffiths-Jones, S. miRBase: annotating high confidence microRNAs using deep sequencing data. Nucleic Acids Res 42, D68-73 (2014).
    • (2014) Nucleic Acids Res , vol.42 , pp. D68-D73
    • Kozomara, A.1    Griffiths-Jones, S.2
  • 12
    • 84906251756 scopus 로고    scopus 로고
    • Circular RNAs are depleted of polymorphisms at microRNA binding sites
    • Thomas, L. F. & Saetrom, P. Circular RNAs are depleted of polymorphisms at microRNA binding sites. Bioinformatics 30, 2243-2246 (2014).
    • (2014) Bioinformatics , vol.30 , pp. 2243-2246
    • Thomas, L.F.1    Saetrom, P.2
  • 13
    • 84922049413 scopus 로고    scopus 로고
    • Colorectal cancer
    • [Stewart, B. W. & Wild, C. P. (ed.)] IARC Press, Lyon
    • Stewart, B. W. & Wild, C. P. [Colorectal cancer] World cancer report 2014. [Stewart, B. W. & Wild, C. P. (ed.)] [392-403] (IARC Press, Lyon 2014).
    • (2014) World Cancer Report 2014 , pp. 392-403
    • Stewart, B.W.1    Wild, C.P.2
  • 14
    • 78651241644 scopus 로고    scopus 로고
    • Colorectal cancer molecular biology moves into clinical practice
    • Pritchard, C. C. & Grady, W. M. Colorectal cancer molecular biology moves into clinical practice. Gut 60, 116-129 (2011).
    • (2011) Gut , vol.60 , pp. 116-129
    • Pritchard, C.C.1    Grady, W.M.2
  • 15
    • 84859821518 scopus 로고    scopus 로고
    • Differential expression of miRNAs in colorectal cancer: Comparison of paired tumor tissue and adjacent normal mucosa using highthroughput sequencing
    • Hamfjord, J. et al. Differential expression of miRNAs in colorectal cancer: comparison of paired tumor tissue and adjacent normal mucosa using highthroughput sequencing. PLoS One 7, e34150 (2012).
    • (2012) PLoS One , vol.7
    • Hamfjord, J.1
  • 16
    • 84856534859 scopus 로고    scopus 로고
    • Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma
    • Castellarin, M. et al. Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma. Genome Res 22, 299-306 (2012).
    • (2012) Genome Res , vol.22 , pp. 299-306
    • Castellarin, M.1
  • 17
    • 0035026949 scopus 로고    scopus 로고
    • Fibroblasts from idiopathic pulmonary fibrosis and normal lungs differ in growth rate, apoptosis, and tissue inhibitor of metalloproteinases expression
    • Ramos, C. et al. Fibroblasts from idiopathic pulmonary fibrosis and normal lungs differ in growth rate, apoptosis, and tissue inhibitor of metalloproteinases expression. Am J Respir Cell Mol Biol 24, 591-598 (2001).
    • (2001) Am J Respir Cell Mol Biol , vol.24 , pp. 591-598
    • Ramos, C.1
  • 18
    • 84865824048 scopus 로고    scopus 로고
    • Idiopathic pulmonary fibrosis: An altered fibroblast proliferation linked to cancer biology
    • Vancheri, C. Idiopathic pulmonary fibrosis: an altered fibroblast proliferation linked to cancer biology. Proc Am Thorac Soc 9, 153-157 (2012).
    • (2012) Proc Am Thorac Soc , vol.9 , pp. 153-157
    • Vancheri, C.1
  • 19
    • 84886101574 scopus 로고    scopus 로고
    • microRNA-7 is a novel inhibitor of YY1 contributing to colorectal tumorigenesis
    • Zhang, N. et al.microRNA-7 is a novel inhibitor of YY1 contributing to colorectal tumorigenesis. Oncogene 32, 5078-5088 (2013).
    • (2013) Oncogene , vol.32 , pp. 5078-5088
    • Zhang, N.1
  • 20
    • 84884735952 scopus 로고    scopus 로고
    • Circular RNA and miR-7 in cancer
    • Hansen, T. B., Kjems, J. & Damgaard, C. K. Circular RNA and miR-7 in cancer. Cancer Res 73, 5609-5612 (2013).
    • (2013) Cancer Res , vol.73 , pp. 5609-5612
    • Hansen, T.B.1    Kjems, J.2    Damgaard, C.K.3
  • 21
    • 80455143733 scopus 로고    scopus 로고
    • miRNA-dependent gene silencing involving Ago2-mediated cleavage of a circular antisense RNA
    • Hansen, T. B. et al. miRNA-dependent gene silencing involving Ago2-mediated cleavage of a circular antisense RNA. EMBO J 30, 4414-4422 (2011).
    • (2011) EMBO J , vol.30 , pp. 4414-4422
    • Hansen, T.B.1
  • 22
    • 33947274769 scopus 로고    scopus 로고
    • Multiple roles of the candidate oncogene ZNF217 in ovarian epithelial neoplastic progression
    • Li, P. et al.Multiple roles of the candidate oncogene ZNF217 in ovarian epithelial neoplastic progression. Int J Cancer 120, 1863-1873 (2007).
    • (2007) Int J Cancer , vol.120 , pp. 1863-1873
    • Li, P.1
  • 23
    • 78650900647 scopus 로고    scopus 로고
    • ImmunoRatio: A publicly available web application for quantitative image analysis of estrogen receptor (ER), progesterone receptor (PR), and Ki-67
    • Tuominen, V. J., Ruotoistenmaki, S., Viitanen, A., Jumppanen, M. & Isola, J. ImmunoRatio: a publicly available web application for quantitative image analysis of estrogen receptor (ER), progesterone receptor (PR), and Ki-67. Breast Cancer Res 12, R56 (2010).
    • (2010) Breast Cancer Res , vol.12 , pp. R56
    • Tuominen, V.J.1    Ruotoistenmaki, S.2    Viitanen, A.3    Jumppanen, M.4    Isola, J.5
  • 24
    • 80052745094 scopus 로고    scopus 로고
    • Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM)
    • Grant, G. R. et al. Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM). Bioinformatics 27, 2518-2528 (2011).
    • (2011) Bioinformatics , vol.27 , pp. 2518-2528
    • Grant, G.R.1
  • 25
    • 84928987900 scopus 로고    scopus 로고
    • HTSeq - A python framework to work with high-throughput sequencing data
    • Anders, S., Pyl, P. T. & Huber, W. HTSeq - A Python framework to work with high-throughput sequencing data. Bioinformatics ; DOI: 10.1093/bioinformatics/btu638 (2014).
    • (2014) Bioinformatics
    • Anders, S.1    Pyl, P.T.2    Huber, W.3
  • 26
    • 84865760395 scopus 로고    scopus 로고
    • GENCODE: The reference human genome annotation for The ENCODE Project
    • Harrow, J. et al. GENCODE: the reference human genome annotation for The ENCODE Project. Genome Res 22, 1760-1774 (2012).
    • (2012) Genome Res , vol.22 , pp. 1760-1774
    • Harrow, J.1
  • 27
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • Langmead, B. & Salzberg, S. L. Fast gapped-read alignment with Bowtie 2. Nat Methods 9, 357-359 (2012).
    • (2012) Nat Methods , vol.9 , pp. 357-359
    • Langmead, B.1    Salzberg, S.L.2
  • 28
    • 84886557480 scopus 로고    scopus 로고
    • Finding consistent patterns: A nonparametric approach for identifying differential expression in RNA-Seq data
    • Li, J. & Tibshirani, R. Finding consistent patterns: a nonparametric approach for identifying differential expression in RNA-Seq data. Stat Methods Med Res 22, 519-536 (2013).
    • (2013) Stat Methods Med Res , vol.22 , pp. 519-536
    • Li, J.1    Tibshirani, R.2
  • 29
    • 84903732552 scopus 로고    scopus 로고
    • A multi-split mapping algorithm for circular RNA, splicing, trans-splicing, and fusion detection
    • Hoffmann, S. et al. A multi-split mapping algorithm for circular RNA, splicing, trans-splicing, and fusion detection. Genome Biol 15, R34 (2014).
    • (2014) Genome Biol , vol.15 , pp. R34
    • Hoffmann, S.1
  • 30
    • 84897397058 scopus 로고    scopus 로고
    • FeatureCounts: An efficient general purpose program for assigning sequence reads to genomic features
    • Liao, Y., Smyth, G. K. & Shi, W. featureCounts: an efficient general purpose program for assigning sequence reads to genomic features. Bioinformatics 30, 923-930 (2014).
    • (2014) Bioinformatics , vol.30 , pp. 923-930
    • Liao, Y.1    Smyth, G.K.2    Shi, W.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.