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Volumn 36, Issue , 2017, Pages 135-146

DCAN: Deep contour-aware networks for object instance segmentation from histology images

Author keywords

Deep contour aware network; Deep learning; Histopathological image analysis; Instance segmentation; Object detection; Transfer learning

Indexed keywords

DEEP LEARNING; HISTOLOGY; OBJECT DETECTION;

EID: 84997796752     PISSN: 13618415     EISSN: 13618423     Source Type: Journal    
DOI: 10.1016/j.media.2016.11.004     Document Type: Article
Times cited : (490)

References (78)
  • 1
    • 77950245872 scopus 로고    scopus 로고
    • Improved automatic detection and segmentation of cell nuclei in histopathology images
    • Al-Kofahi, Y., Lassoued, W., Lee, W., Roysam, B., Improved automatic detection and segmentation of cell nuclei in histopathology images. IEEE Trans. Biomed. Eng. 57:4 (2010), 841–852.
    • (2010) IEEE Trans. Biomed. Eng. , vol.57 , Issue.4 , pp. 841-852
    • Al-Kofahi, Y.1    Lassoued, W.2    Lee, W.3    Roysam, B.4
  • 4
    • 84973888826 scopus 로고    scopus 로고
    • High-for-low and low-for-high: efficient boundary detection from deep object features and its applications to high-level vision
    • Bertasius, G., Shi, J., Torresani, L., High-for-low and low-for-high: efficient boundary detection from deep object features and its applications to high-level vision. Proceedings of the IEEE International Conference on Computer Vision, 2015, 504–512.
    • (2015) Proceedings of the IEEE International Conference on Computer Vision , pp. 504-512
    • Bertasius, G.1    Shi, J.2    Torresani, L.3
  • 5
    • 84997692680 scopus 로고    scopus 로고
    • Semantic segmentation with boundary neural fields
    • arXiv preprint arXiv: 1511.02674.
    • Bertasius, G., Shi, J., Torresani, L., Semantic segmentation with boundary neural fields. CoRR, 2015 arXiv preprint arXiv: 1511.02674.
    • (2015) CoRR
    • Bertasius, G.1    Shi, J.2    Torresani, L.3
  • 12
    • 84997640694 scopus 로고    scopus 로고
    • Semantic image segmentation with task-specific edge detection using cnns and a discriminatively trained domain transform
    • arXiv preprint arXiv: 1511.03328.
    • Chen, L.-C., Barron, J.T., Papandreou, G., Murphy, K., Yuille, A.L., Semantic image segmentation with task-specific edge detection using cnns and a discriminatively trained domain transform. CoRR, 2015 arXiv preprint arXiv: 1511.03328.
    • (2015) CoRR
    • Chen, L.-C.1    Barron, J.T.2    Papandreou, G.3    Murphy, K.4    Yuille, A.L.5
  • 14
    • 65349111374 scopus 로고    scopus 로고
    • Segmentation of clustered nuclei with shape markers and marking function
    • Cheng, J., Rajapakse, J.C., Segmentation of clustered nuclei with shape markers and marking function. IEEE Trans. Biomed. Eng. 56:3 (2009), 741–748.
    • (2009) IEEE Trans. Biomed. Eng. , vol.56 , Issue.3 , pp. 741-748
    • Cheng, J.1    Rajapakse, J.C.2
  • 19
    • 4444356703 scopus 로고    scopus 로고
    • The use of morphological characteristics and texture analysis in the identification of tissue composition in prostatic neoplasia
    • Diamond, J., Anderson, N.H., Bartels, P.H., Montironi, R., Hamilton, P.W., The use of morphological characteristics and texture analysis in the identification of tissue composition in prostatic neoplasia. Hum. Pathol. 35:9 (2004), 1121–1131.
    • (2004) Hum. Pathol. , vol.35 , Issue.9 , pp. 1121-1131
    • Diamond, J.1    Anderson, N.H.2    Bartels, P.H.3    Montironi, R.4    Hamilton, P.W.5
  • 21
  • 23
    • 0035728207 scopus 로고    scopus 로고
    • Scoring nuclear pleomorphism in breast cancer
    • Dunne, B., Going, J., Scoring nuclear pleomorphism in breast cancer. Histopathology 39:3 (2001), 259–265.
    • (2001) Histopathology , vol.39 , Issue.3 , pp. 259-265
    • Dunne, B.1    Going, J.2
  • 24
    • 0026072872 scopus 로고
    • Pathological prognostic factors in breast cancer. I. The value of histological grade in breast cancer: experience from a large study with long-term follow-up
    • Elston, C.W., Ellis, I.O., et al. Pathological prognostic factors in breast cancer. I. The value of histological grade in breast cancer: experience from a large study with long-term follow-up. Histopathology 19:5 (1991), 403–410.
    • (1991) Histopathology , vol.19 , Issue.5 , pp. 403-410
    • Elston, C.W.1    Ellis, I.O.2
  • 27
    • 34250856799 scopus 로고    scopus 로고
    • An image analysis approach for automatic malignancy determination of prostate pathological images
    • Farjam, R., Soltanian-Zadeh, H., Jafari-Khouzani, K., Zoroofi, R.A., An image analysis approach for automatic malignancy determination of prostate pathological images. Cytometry Part B: Clin. Cytom. 72:4 (2007), 227–240.
    • (2007) Cytometry Part B: Clin. Cytom. , vol.72 , Issue.4 , pp. 227-240
    • Farjam, R.1    Soltanian-Zadeh, H.2    Jafari-Khouzani, K.3    Zoroofi, R.A.4
  • 29
    • 84896288043 scopus 로고    scopus 로고
    • A novel polar space random field model for the detection of glandular structures
    • Fu, H., Qiu, G., Shu, J., Ilyas, M., A novel polar space random field model for the detection of glandular structures. IEEE Trans. Med. Imaging 33:3 (2014), 764–776.
    • (2014) IEEE Trans. Med. Imaging , vol.33 , Issue.3 , pp. 764-776
    • Fu, H.1    Qiu, G.2    Shu, J.3    Ilyas, M.4
  • 30
    • 0026589997 scopus 로고
    • Histologic grading of prostate cancer: a perspective
    • Gleason, D.F., Histologic grading of prostate cancer: a perspective. Hum. Pathol. 23:3 (1992), 273–279.
    • (1992) Hum. Pathol. , vol.23 , Issue.3 , pp. 273-279
    • Gleason, D.F.1
  • 31
    • 84968661778 scopus 로고    scopus 로고
    • Guest editorial deep learning in medical imaging: overview and future promise of an exciting new technique
    • Greenspan, H., van Ginneken, B., Summers, R.M., Guest editorial deep learning in medical imaging: overview and future promise of an exciting new technique. IEEE Trans. Med. Imaging 35:5 (2016), 1153–1159.
    • (2016) IEEE Trans. Med. Imaging , vol.35 , Issue.5 , pp. 1153-1159
    • Greenspan, H.1    van Ginneken, B.2    Summers, R.M.3
  • 34
    • 0028223625 scopus 로고
    • Expert system support using bayesian belief networks in the diagnosis of fine needle aspiration biopsy specimens of the breast
    • Hamilton, P., Anderson, N., Bartels, P., Thompson, D., Expert system support using bayesian belief networks in the diagnosis of fine needle aspiration biopsy specimens of the breast. J. Clin. Pathol. 47:4 (1994), 329–336.
    • (1994) J. Clin. Pathol. , vol.47 , Issue.4 , pp. 329-336
    • Hamilton, P.1    Anderson, N.2    Bartels, P.3    Thompson, D.4
  • 36
    • 84983479464 scopus 로고    scopus 로고
    • Improving neural networks by preventing co-adaptation of feature detectors
    • arXiv preprint arXiv: 1207.0580.
    • Hinton, G.E., Srivastava, N., Krizhevsky, A., Sutskever, I., Salakhutdinov, R.R., Improving neural networks by preventing co-adaptation of feature detectors. CoRR, 2012 arXiv preprint arXiv: 1207.0580.
    • (2012) CoRR
    • Hinton, G.E.1    Srivastava, N.2    Krizhevsky, A.3    Sutskever, I.4    Salakhutdinov, R.R.5
  • 37
    • 84900449424 scopus 로고    scopus 로고
    • Methods for nuclei detection, segmentation, and classification in digital histopathology: a reviewcurrent status and future potential
    • Irshad, H., Veillard, A., Roux, L., Racoceanu, D., Methods for nuclei detection, segmentation, and classification in digital histopathology: a reviewcurrent status and future potential. IEEE Rev. Biomed. Eng. 7 (2014), 97–114.
    • (2014) IEEE Rev. Biomed. Eng. , vol.7 , pp. 97-114
    • Irshad, H.1    Veillard, A.2    Roux, L.3    Racoceanu, D.4
  • 38
    • 84885944291 scopus 로고    scopus 로고
    • Automated mitosis detection in histopathology using morphological and multi-channel statistics features
    • Irshad, H., et al. Automated mitosis detection in histopathology using morphological and multi-channel statistics features. J. Pathol. Inform., 4(1), 2013, 10.
    • (2013) J. Pathol. Inform. , vol.4 , Issue.1 , pp. 10
    • Irshad, H.1
  • 40
  • 42
    • 77956942046 scopus 로고    scopus 로고
    • Segmenting clustered nuclei using h-minima transform-based marker extraction and contour parameterization
    • Jung, C., Kim, C., Segmenting clustered nuclei using h-minima transform-based marker extraction and contour parameterization. IEEE Trans. Biomed. Eng. 57:10 (2010), 2600–2604.
    • (2010) IEEE Trans. Biomed. Eng. , vol.57 , Issue.10 , pp. 2600-2604
    • Jung, C.1    Kim, C.2
  • 43
    • 84989960541 scopus 로고    scopus 로고
    • Semantic segmentation of colon glands with deep convolutional neural networks and total variation segmentation
    • arXiv preprint arXiv: 1511.06919.
    • Kainz, P., Pfeiffer, M., Urschler, M., Semantic segmentation of colon glands with deep convolutional neural networks and total variation segmentation. CoRR, 2015 arXiv preprint arXiv: 1511.06919.
    • (2015) CoRR
    • Kainz, P.1    Pfeiffer, M.2    Urschler, M.3
  • 44
    • 84901269374 scopus 로고    scopus 로고
    • A nonlinear mapping approach to stain normalization in digital histopathology images using image-specific color deconvolution
    • Khan, A.M., Rajpoot, N., Treanor, D., Magee, D., A nonlinear mapping approach to stain normalization in digital histopathology images using image-specific color deconvolution. IEEE Trans. Biomed. Eng. 61:6 (2014), 1729–1738.
    • (2014) IEEE Trans. Biomed. Eng. , vol.61 , Issue.6 , pp. 1729-1738
    • Khan, A.M.1    Rajpoot, N.2    Treanor, D.3    Magee, D.4
  • 46
    • 0032203257 scopus 로고    scopus 로고
    • Gradient-based learning applied to document recognition
    • LeCun, Y., Bottou, L., Bengio, Y., Haffner, P., Gradient-based learning applied to document recognition. Proc. IEEE 86:11 (1998), 2278–2324.
    • (1998) Proc. IEEE , vol.86 , Issue.11 , pp. 2278-2324
    • LeCun, Y.1    Bottou, L.2    Bengio, Y.3    Haffner, P.4
  • 49
    • 85032750965 scopus 로고    scopus 로고
    • Cell segmentation: 50 years down the road [life sciences]
    • Meijering, E., Cell segmentation: 50 years down the road [life sciences]. IEEE Signal Process. Mag. 29:5 (2012), 140–145.
    • (2012) IEEE Signal Process. Mag. , vol.29 , Issue.5 , pp. 140-145
    • Meijering, E.1
  • 51
    • 84900418309 scopus 로고    scopus 로고
    • Prostate cancer detection: fusion of cytological and textural features
    • Nguyen, K., Jain, A.K., Sabata, B., et al. Prostate cancer detection: fusion of cytological and textural features. J. Pathol. Inform., 2(2), 2011, 3.
    • (2011) J. Pathol. Inform. , vol.2 , Issue.2 , pp. 3
    • Nguyen, K.1    Jain, A.K.2    Sabata, B.3
  • 53
    • 84867839682 scopus 로고    scopus 로고
    • Overlapping cell nuclei segmentation using a spatially adaptive active physical model
    • Plissiti, M.E., Nikou, C., Overlapping cell nuclei segmentation using a spatially adaptive active physical model. IEEE Trans. Image Process. 21:11 (2012), 4568–4580.
    • (2012) IEEE Trans. Image Process. , vol.21 , Issue.11 , pp. 4568-4580
    • Plissiti, M.E.1    Nikou, C.2
  • 58
    • 78149394261 scopus 로고    scopus 로고
    • Automated analysis of pin-4 stained prostate needle biopsies
    • Springer
    • Sabata, B., Babenko, B., Monroe, R., Srinivas, C., Automated analysis of pin-4 stained prostate needle biopsies. Prostate Cancer Imaging, 2010, Springer, 89–100.
    • (2010) Prostate Cancer Imaging , pp. 89-100
    • Sabata, B.1    Babenko, B.2    Monroe, R.3    Srinivas, C.4
  • 59
    • 84969962996 scopus 로고    scopus 로고
    • Deep convolutional neural networks for computer-aided detection: CNN architectures, dataset characteristics and transfer learning
    • Shin, H.-C., Roth, H.R., Gao, M., Lu, L., Xu, Z., Nogues, I., Yao, J., Mollura, D., Summers, R.M., Deep convolutional neural networks for computer-aided detection: CNN architectures, dataset characteristics and transfer learning. IEEE Trans. Med. Imaging 35:5 (2016), 1285–1298.
    • (2016) IEEE Trans. Med. Imaging , vol.35 , Issue.5 , pp. 1285-1298
    • Shin, H.-C.1    Roth, H.R.2    Gao, M.3    Lu, L.4    Xu, Z.5    Nogues, I.6    Yao, J.7    Mollura, D.8    Summers, R.M.9
  • 61
    • 84968542311 scopus 로고    scopus 로고
    • Locality sensitive deep learning for detection and classification of nuclei in routine colon cancer histology images
    • Sirinukunwattana, K., Raza, S.E.A., Tsang, Y.-W., Snead, D.R.J., Cree, I.A., Rajpoot, N.M., Locality sensitive deep learning for detection and classification of nuclei in routine colon cancer histology images. IEEE Trans. Med. Imaging 35:5 (2016), 1196–1206.
    • (2016) IEEE Trans. Med. Imaging , vol.35 , Issue.5 , pp. 1196-1206
    • Sirinukunwattana, K.1    Raza, S.E.A.2    Tsang, Y.-W.3    Snead, D.R.J.4    Cree, I.A.5    Rajpoot, N.M.6
  • 62
    • 84955289509 scopus 로고    scopus 로고
    • A stochastic polygons model for glandular structures in colon histology images
    • Sirinukunwattana, K., Snead, D., Rajpoot, N., A stochastic polygons model for glandular structures in colon histology images. IEEE Trans. Med. Imaging 34:11 (2015), 2366–2378.
    • (2015) IEEE Trans. Med. Imaging , vol.34 , Issue.11 , pp. 2366-2378
    • Sirinukunwattana, K.1    Snead, D.2    Rajpoot, N.3
  • 63
    • 84932166659 scopus 로고    scopus 로고
    • A novel texture descriptor for detection of glandular structures in colon histology images
    • International Society for Optics and Photonics 94200S-94200S
    • Sirinukunwattana, K., Snead, D.R., Rajpoot, N.M., A novel texture descriptor for detection of glandular structures in colon histology images. SPIE Medical Imaging, 2015, International Society for Optics and Photonics 94200S-94200S.
    • (2015) SPIE Medical Imaging
    • Sirinukunwattana, K.1    Snead, D.R.2    Rajpoot, N.M.3
  • 64
    • 0026551996 scopus 로고
    • Nuclear pleomorphism, a strong prognostic factor in axillary node-negative small invasive breast cancer
    • Stierer, M., Rosen, H., Weber, R., Nuclear pleomorphism, a strong prognostic factor in axillary node-negative small invasive breast cancer. Breast Cancer Res. Treat. 20:2 (1991), 109–116.
    • (1991) Breast Cancer Res. Treat. , vol.20 , Issue.2 , pp. 109-116
    • Stierer, M.1    Rosen, H.2    Weber, R.3
  • 69
    • 0031876216 scopus 로고    scopus 로고
    • Invasive carcinomas and fibroadenomas of the breast: comparison of microvessel distributions–implications for imaging modalities
    • Weind, K.L., Maier, C.F., Rutt, B.K., Moussa, M., Invasive carcinomas and fibroadenomas of the breast: comparison of microvessel distributions–implications for imaging modalities. Radiology 208:2 (1998), 477–483.
    • (1998) Radiology , vol.208 , Issue.2 , pp. 477-483
    • Weind, K.L.1    Maier, C.F.2    Rutt, B.K.3    Moussa, M.4
  • 71
    • 0022471098 scopus 로고
    • Learning representations by back-propagating errors
    • Williams, D.R.G.H.R., Hinton, G., Learning representations by back-propagating errors. Nature 323 (1986), 533–536.
    • (1986) Nature , vol.323 , pp. 533-536
    • Williams, D.R.G.H.R.1    Hinton, G.2
  • 72
    • 29744433299 scopus 로고    scopus 로고
    • Segmentation of intestinal gland images with iterative region growing
    • WU, H.-S., Xu, R., Harpaz, N., Burstein, D., Gil, J., Segmentation of intestinal gland images with iterative region growing. J. Microsc. 220:3 (2005), 190–204.
    • (2005) J. Microsc. , vol.220 , Issue.3 , pp. 190-204
    • WU, H.-S.1    Xu, R.2    Harpaz, N.3    Burstein, D.4    Gil, J.5
  • 74
    • 84959375736 scopus 로고    scopus 로고
    • Stacked sparse autoencoder (SSAE) for nuclei detection on breast cancer histopathology images
    • Xu, J., Xiang, L., Liu, Q., Gilmore, H., Wu, J., Tang, J., Madabhushi, A., Stacked sparse autoencoder (SSAE) for nuclei detection on breast cancer histopathology images. IEEE Trans. Med. Imaging 35:1 (2016), 119–130.
    • (2016) IEEE Trans. Med. Imaging , vol.35 , Issue.1 , pp. 119-130
    • Xu, J.1    Xiang, L.2    Liu, Q.3    Gilmore, H.4    Wu, J.5    Tang, J.6    Madabhushi, A.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.