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Volumn 167, Issue 5, 2016, Pages 1385-1397.e11

Histone Acetylome-wide Association Study of Autism Spectrum Disorder

Author keywords

autism spectrum disorder; disease epigenetic alterations; epigenetics; histone acetylation; histone acetylation quantitative trait loci; regulome profiling

Indexed keywords

CIS ACTING ELEMENT; TRANSCRIPTION FACTOR;

EID: 84995757367     PISSN: 00928674     EISSN: 10974172     Source Type: Journal    
DOI: 10.1016/j.cell.2016.10.031     Document Type: Article
Times cited : (213)

References (79)
  • 1
    • 77950899212 scopus 로고    scopus 로고
    • Connecting genes to brain in the autism spectrum disorders
    • Abrahams, B.S., Geschwind, D.H., Connecting genes to brain in the autism spectrum disorders. Arch. Neurol. 67 (2010), 395–399.
    • (2010) Arch. Neurol. , vol.67 , pp. 395-399
    • Abrahams, B.S.1    Geschwind, D.H.2
  • 5
    • 84859230726 scopus 로고    scopus 로고
    • The ciliogenic transcription factor RFX3 regulates early midline distribution of guidepost neurons required for corpus callosum development
    • Benadiba, C., Magnani, D., Niquille, M., Morlé, L., Valloton, D., Nawabi, H., Ait-Lounis, A., Otsmane, B., Reith, W., Theil, T., et al. The ciliogenic transcription factor RFX3 regulates early midline distribution of guidepost neurons required for corpus callosum development. PLoS Genet., 8, 2012, e1002606.
    • (2012) PLoS Genet. , vol.8 , pp. e1002606
    • Benadiba, C.1    Magnani, D.2    Niquille, M.3    Morlé, L.4    Valloton, D.5    Nawabi, H.6    Ait-Lounis, A.7    Otsmane, B.8    Reith, W.9    Theil, T.10
  • 7
    • 0037316303 scopus 로고    scopus 로고
    • A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
    • Bolstad, B.M., Irizarry, R.A., Astrand, M., Speed, T.P., A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 19 (2003), 185–193.
    • (2003) Bioinformatics , vol.19 , pp. 185-193
    • Bolstad, B.M.1    Irizarry, R.A.2    Astrand, M.3    Speed, T.P.4
  • 8
    • 84939793826 scopus 로고    scopus 로고
    • From the genetic architecture to synaptic plasticity in autism spectrum disorder
    • Bourgeron, T., From the genetic architecture to synaptic plasticity in autism spectrum disorder. Nat. Rev. Neurosci. 16 (2015), 551–563.
    • (2015) Nat. Rev. Neurosci. , vol.16 , pp. 551-563
    • Bourgeron, T.1
  • 11
    • 84893648772 scopus 로고    scopus 로고
    • What We Have Learned about Autism Spectrum Disorder from Valproic Acid
    • Chomiak, T., Turner, N., Hu, B., What We Have Learned about Autism Spectrum Disorder from Valproic Acid. Pathol. Res. Int., 2013, 2013, 712758.
    • (2013) Pathol. Res. Int. , vol.2013 , pp. 712758
    • Chomiak, T.1    Turner, N.2    Hu, B.3
  • 14
    • 84876296688 scopus 로고    scopus 로고
    • Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis
    • Cross-Disorder Group of the Psychiatric Genomics Consortium. Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis. Lancet 381 (2013), 1371–1379.
    • (2013) Lancet , vol.381 , pp. 1371-1379
  • 15
    • 84962890386 scopus 로고    scopus 로고
    • Advancing the understanding of autism disease mechanisms through genetics
    • de la Torre-Ubieta, L., Won, H., Stein, J.L., Geschwind, D.H., Advancing the understanding of autism disease mechanisms through genetics. Nat. Med. 22 (2016), 345–361.
    • (2016) Nat. Med. , vol.22 , pp. 345-361
    • de la Torre-Ubieta, L.1    Won, H.2    Stein, J.L.3    Geschwind, D.H.4
  • 20
    • 84862493260 scopus 로고    scopus 로고
    • Genetic architecture in autism spectrum disorder
    • Devlin, B., Scherer, S.W., Genetic architecture in autism spectrum disorder. Curr. Opin. Genet. Dev. 22 (2012), 229–237.
    • (2012) Curr. Opin. Genet. Dev. , vol.22 , pp. 229-237
    • Devlin, B.1    Scherer, S.W.2
  • 22
    • 84944146721 scopus 로고    scopus 로고
    • Gene hunting in autism spectrum disorder: on the path to precision medicine
    • Geschwind, D.H., State, M.W., Gene hunting in autism spectrum disorder: on the path to precision medicine. Lancet Neurol. 14 (2015), 1109–1120.
    • (2015) Lancet Neurol. , vol.14 , pp. 1109-1120
    • Geschwind, D.H.1    State, M.W.2
  • 24
    • 84877695008 scopus 로고    scopus 로고
    • Environmental factors in autism
    • Grabrucker, A.M., Environmental factors in autism. Front. Psychiatry, 3, 2013, 118.
    • (2013) Front. Psychiatry , vol.3 , pp. 118
    • Grabrucker, A.M.1
  • 26
    • 0036193460 scopus 로고    scopus 로고
    • MEF2-mediated recruitment of class II HDAC at the EBV immediate early gene BZLF1 links latency and chromatin remodeling
    • Gruffat, H., Manet, E., Sergeant, A., MEF2-mediated recruitment of class II HDAC at the EBV immediate early gene BZLF1 links latency and chromatin remodeling. EMBO Rep. 3 (2002), 141–146.
    • (2002) EMBO Rep. , vol.3 , pp. 141-146
    • Gruffat, H.1    Manet, E.2    Sergeant, A.3
  • 27
    • 84875700729 scopus 로고    scopus 로고
    • A cell epigenotype specific model for the correction of brain cellular heterogeneity bias and its application to age, brain region and major depression
    • Guintivano, J., Aryee, M.J., Kaminsky, Z.A., A cell epigenotype specific model for the correction of brain cellular heterogeneity bias and its application to age, brain region and major depression. Epigenetics 8 (2013), 290–302.
    • (2013) Epigenetics , vol.8 , pp. 290-302
    • Guintivano, J.1    Aryee, M.J.2    Kaminsky, Z.A.3
  • 30
    • 77952567987 scopus 로고    scopus 로고
    • Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
    • Heinz, S., Benner, C., Spann, N., Bertolino, E., Lin, Y.C., Laslo, P., Cheng, J.X., Murre, C., Singh, H., Glass, C.K., Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol. Cell 38 (2010), 576–589.
    • (2010) Mol. Cell , vol.38 , pp. 576-589
    • Heinz, S.1    Benner, C.2    Spann, N.3    Bertolino, E.4    Lin, Y.C.5    Laslo, P.6    Cheng, J.X.7    Murre, C.8    Singh, H.9    Glass, C.K.10
  • 34
    • 84860227231 scopus 로고    scopus 로고
    • Epigenetic understanding of gene-environment interactions in psychiatric disorders: a new concept of clinical genetics
    • Kubota, T., Miyake, K., Hirasawa, T., Epigenetic understanding of gene-environment interactions in psychiatric disorders: a new concept of clinical genetics. Clin. Epigenetics, 4, 2012, 1.
    • (2012) Clin. Epigenetics , vol.4 , pp. 1
    • Kubota, T.1    Miyake, K.2    Hirasawa, T.3
  • 36
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li, H., Durbin, R., Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25 (2009), 1754–1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 39
    • 84930619857 scopus 로고    scopus 로고
    • The role of epigenetic change in autism spectrum disorders
    • Loke, Y.J., Hannan, A.J., Craig, J.M., The role of epigenetic change in autism spectrum disorders. Front. Neurol., 6, 2015, 107.
    • (2015) Front. Neurol. , vol.6 , pp. 107
    • Loke, Y.J.1    Hannan, A.J.2    Craig, J.M.3
  • 42
    • 84957436740 scopus 로고    scopus 로고
    • Risk factors in autism: thinking outside the brain
    • Matelski, L., Van de Water, J., Risk factors in autism: thinking outside the brain. J. Autoimmun. 67 (2016), 1–7.
    • (2016) J. Autoimmun. , vol.67 , pp. 1-7
    • Matelski, L.1    Van de Water, J.2
  • 46
    • 84899816726 scopus 로고    scopus 로고
    • Gastrointestinal symptoms in autism spectrum disorder: a meta-analysis
    • McElhanon, B.O., McCracken, C., Karpen, S., Sharp, W.G., Gastrointestinal symptoms in autism spectrum disorder: a meta-analysis. Pediatrics 133 (2014), 872–883.
    • (2014) Pediatrics , vol.133 , pp. 872-883
    • McElhanon, B.O.1    McCracken, C.2    Karpen, S.3    Sharp, W.G.4
  • 48
    • 84880924522 scopus 로고    scopus 로고
    • From promises to practical strategies in epigenetic epidemiology
    • Mill, J., Heijmans, B.T., From promises to practical strategies in epigenetic epidemiology. Nat. Rev. Genet. 14 (2013), 585–594.
    • (2013) Nat. Rev. Genet. , vol.14 , pp. 585-594
    • Mill, J.1    Heijmans, B.T.2
  • 53
    • 84889561601 scopus 로고    scopus 로고
    • Integrative functional genomic analyses implicate specific molecular pathways and circuits in autism
    • Parikshak, N.N., Luo, R., Zhang, A., Won, H., Lowe, J.K., Chandran, V., Horvath, S., Geschwind, D.H., Integrative functional genomic analyses implicate specific molecular pathways and circuits in autism. Cell 155 (2013), 1008–1021.
    • (2013) Cell , vol.155 , pp. 1008-1021
    • Parikshak, N.N.1    Luo, R.2    Zhang, A.3    Won, H.4    Lowe, J.K.5    Chandran, V.6    Horvath, S.7    Geschwind, D.H.8
  • 54
    • 84937520584 scopus 로고    scopus 로고
    • Systems biology and gene networks in neurodevelopmental and neurodegenerative disorders
    • Parikshak, N.N., Gandal, M.J., Geschwind, D.H., Systems biology and gene networks in neurodevelopmental and neurodegenerative disorders. Nat. Rev. Genet. 16 (2015), 441–458.
    • (2015) Nat. Rev. Genet. , vol.16 , pp. 441-458
    • Parikshak, N.N.1    Gandal, M.J.2    Geschwind, D.H.3
  • 56
    • 0030916336 scopus 로고    scopus 로고
    • What's up and down with histone deacetylation and transcription?
    • Pazin, M.J., Kadonaga, J.T., What's up and down with histone deacetylation and transcription?. Cell 89 (1997), 325–328.
    • (1997) Cell , vol.89 , pp. 325-328
    • Pazin, M.J.1    Kadonaga, J.T.2
  • 57
    • 84930965855 scopus 로고    scopus 로고
    • Tissue-specific regulation and function of Grb10 during growth and neuronal commitment
    • Plasschaert, R.N., Bartolomei, M.S., Tissue-specific regulation and function of Grb10 during growth and neuronal commitment. Proc. Natl. Acad. Sci. USA 112 (2015), 6841–6847.
    • (2015) Proc. Natl. Acad. Sci. USA , vol.112 , pp. 6841-6847
    • Plasschaert, R.N.1    Bartolomei, M.S.2
  • 60
    • 84871280445 scopus 로고    scopus 로고
    • Evidence of microglial activation in autism and its possible role in brain underconnectivity
    • Rodriguez, J.I., Kern, J.K., Evidence of microglial activation in autism and its possible role in brain underconnectivity. Neuron Glia Biol. 7 (2011), 205–213.
    • (2011) Neuron Glia Biol. , vol.7 , pp. 205-213
    • Rodriguez, J.I.1    Kern, J.K.2
  • 62
    • 84890256389 scopus 로고    scopus 로고
    • Channelopathy pathogenesis in autism spectrum disorders
    • Schmunk, G., Gargus, J.J., Channelopathy pathogenesis in autism spectrum disorders. Front. Genet., 4, 2013, 222.
    • (2013) Front. Genet. , vol.4 , pp. 222
    • Schmunk, G.1    Gargus, J.J.2
  • 65
    • 84872714472 scopus 로고    scopus 로고
    • Rare inherited variation in autism: beginning to see the forest and a few trees
    • Stein, J.L., Parikshak, N.N., Geschwind, D.H., Rare inherited variation in autism: beginning to see the forest and a few trees. Neuron 77 (2013), 209–211.
    • (2013) Neuron , vol.77 , pp. 209-211
    • Stein, J.L.1    Parikshak, N.N.2    Geschwind, D.H.3
  • 68
    • 84946481204 scopus 로고    scopus 로고
    • WASP: allele-specific software for robust molecular quantitative trait locus discovery
    • van de Geijn, B., McVicker, G., Gilad, Y., Pritchard, J.K., WASP: allele-specific software for robust molecular quantitative trait locus discovery. Nat. Methods 12 (2015), 1061–1063.
    • (2015) Nat. Methods , vol.12 , pp. 1061-1063
    • van de Geijn, B.1    McVicker, G.2    Gilad, Y.3    Pritchard, J.K.4
  • 70
    • 84875921248 scopus 로고    scopus 로고
    • Reversing autism by targeting downstream mTOR signaling
    • Wang, H., Doering, L.C., Reversing autism by targeting downstream mTOR signaling. Front. Cell. Neurosci., 7, 2013, 28.
    • (2013) Front. Cell. Neurosci. , vol.7 , pp. 28
    • Wang, H.1    Doering, L.C.2
  • 75
    • 25444446426 scopus 로고    scopus 로고
    • Histone deacetylase inhibitors suppress the induction of c-Jun and its target genes including COX-2
    • Yamaguchi, K., Lantowski, A., Dannenberg, A.J., Subbaramaiah, K., Histone deacetylase inhibitors suppress the induction of c-Jun and its target genes including COX-2. J. Biol. Chem. 280 (2005), 32569–32577.
    • (2005) J. Biol. Chem. , vol.280 , pp. 32569-32577
    • Yamaguchi, K.1    Lantowski, A.2    Dannenberg, A.J.3    Subbaramaiah, K.4
  • 76
    • 84859776084 scopus 로고    scopus 로고
    • Infantile zinc deficiency: association with autism spectrum disorders
    • Yasuda, H., Yoshida, K., Yasuda, Y., Tsutsui, T., Infantile zinc deficiency: association with autism spectrum disorders. Sci. Rep., 1, 2011, 129.
    • (2011) Sci. Rep. , vol.1 , pp. 129
    • Yasuda, H.1    Yoshida, K.2    Yasuda, Y.3    Tsutsui, T.4
  • 77
    • 84939507046 scopus 로고    scopus 로고
    • Systematic chromatin state comparison of epigenomes associated with diverse properties including sex and tissue type
    • Yen, A., Kellis, M., Systematic chromatin state comparison of epigenomes associated with diverse properties including sex and tissue type. Nat. Commun., 6, 2015, 7973.
    • (2015) Nat. Commun. , vol.6 , pp. 7973
    • Yen, A.1    Kellis, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.