메뉴 건너뛰기




Volumn 34, Issue 8, 2016, Pages 863-868

Genome-wide analysis reveals specificities of Cpf1 endonucleases in human cells

Author keywords

[No Author keywords available]

Indexed keywords

BIOTECHNOLOGY;

EID: 84981318543     PISSN: 10870156     EISSN: 15461696     Source Type: Journal    
DOI: 10.1038/nbt.3609     Document Type: Article
Times cited : (544)

References (28)
  • 1
    • 84884911076 scopus 로고    scopus 로고
    • Heritable gene knockout in Caenorhabditis elegans by direct injection of Cas9-sgRNA ribonucleoproteins
    • Cho, S.W., Lee, J., Carroll, D., Kim, J.S. & Lee, J. Heritable gene knockout in Caenorhabditis elegans by direct injection of Cas9-sgRNA ribonucleoproteins. Genetics 195, 1177-1180 (2013).
    • (2013) Genetics , vol.195 , pp. 1177-1180
    • Cho, S.W.1    Lee, J.2    Carroll, D.3    Kim, J.S.4    Lee, J.5
  • 2
    • 84874624936 scopus 로고    scopus 로고
    • Targeted genome engineering in human cells with the Cas9 RNA-guided endonuclease
    • Cho, S.W., Kim, S., Kim, J.M. & Kim, J.S. Targeted genome engineering in human cells with the Cas9 RNA-guided endonuclease. Nat. Biotechnol. 31, 230-232 (2013).
    • (2013) Nat. Biotechnol. , vol.31 , pp. 230-232
    • Cho, S.W.1    Kim, S.2    Kim, J.M.3    Kim, J.S.4
  • 3
    • 84873734105 scopus 로고    scopus 로고
    • RNA-guided human genome engineering via Cas9
    • Mali, P. et al. RNA-guided human genome engineering via Cas9. Science 339, 823-826 (2013).
    • (2013) Science , vol.339 , pp. 823-826
    • Mali, P.1
  • 4
    • 84876567971 scopus 로고    scopus 로고
    • RNA-programmed genome editing in human cells
    • Jinek, M. et al. RNA-programmed genome editing in human cells. eLife 2, e00471 (2013).
    • (2013) ELife , vol.2 , pp. e00471
    • Jinek, M.1
  • 5
    • 84874608929 scopus 로고    scopus 로고
    • RNA-guided editing of bacterial genomes using CRISPR-Cas systems
    • Jiang, W., Bikard, D., Cox, D., Zhang, F. & Marraffini, L.A. RNA-guided editing of bacterial genomes using CRISPR-Cas systems. Nat. Biotechnol. 31, 233-239 (2013).
    • (2013) Nat. Biotechnol. , vol.31 , pp. 233-239
    • Jiang, W.1    Bikard, D.2    Cox, D.3    Zhang, F.4    Marraffini, L.A.5
  • 6
    • 84874617789 scopus 로고    scopus 로고
    • Efficient genome editing in zebrafish using a CRISPR-Cas system
    • Hwang, W.Y. et al. Efficient genome editing in zebrafish using a CRISPR-Cas system. Nat. Biotechnol. 31, 227-229 (2013).
    • (2013) Nat. Biotechnol. , vol.31 , pp. 227-229
    • Hwang, W.Y.1
  • 7
    • 84873729095 scopus 로고    scopus 로고
    • Multiplex genome engineering using CRISPR/Cas systems
    • Cong, L. et al. Multiplex genome engineering using CRISPR/Cas systems. Science 339, 819-823 (2013).
    • (2013) Science , vol.339 , pp. 819-823
    • Cong, L.1
  • 8
    • 84898778301 scopus 로고    scopus 로고
    • A guide to genome engineering with programmable nucleases
    • Kim, H. & Kim, J.S. A guide to genome engineering with programmable nucleases. Nat. Rev. Genet. 15, 321-334 (2014).
    • (2014) Nat. Rev. Genet. , vol.15 , pp. 321-334
    • Kim, H.1    Kim, J.S.2
  • 9
    • 84865070369 scopus 로고    scopus 로고
    • A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity
    • Jinek, M. et al. A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science 337, 816-821 (2012).
    • (2012) Science , vol.337 , pp. 816-821
    • Jinek, M.1
  • 10
    • 84975678715 scopus 로고    scopus 로고
    • Cpf1 is a single RNA-guided endonuclease of a class 2 CRISPRCas system
    • Zetsche, B. et al. Cpf1 is a single RNA-guided endonuclease of a class 2 CRISPRCas system. Cell 163, 759-771 (2015).
    • (2015) Cell , vol.163 , pp. 759-771
    • Zetsche, B.1
  • 11
    • 84960392032 scopus 로고    scopus 로고
    • Genome-wide target specificities of CRISPR-Cas9 nucleases revealed by multiplex Digenome-seq
    • Kim, D., Kim, S., Kim, S., Park, J. & Kim, J.S. Genome-wide target specificities of CRISPR-Cas9 nucleases revealed by multiplex Digenome-seq. Genome Res. 26, 406-415 (2016).
    • (2016) Genome Res. , vol.26 , pp. 406-415
    • Kim, D.1    Kim, S.2    Kim, S.3    Park, J.4    Kim, J.S.5
  • 12
    • 84927514894 scopus 로고    scopus 로고
    • In vivo genome editing using Staphylococcus aureus Cas9
    • Ran, F.A. et al. In vivo genome editing using Staphylococcus aureus Cas9. Nature 520, 186-191 (2015).
    • (2015) Nature , vol.520 , pp. 186-191
    • Ran, F.A.1
  • 13
    • 84896308706 scopus 로고    scopus 로고
    • Cas-OFFinder: A fast and versatile algorithm that searches for potential off-target sites of Cas9 RNA-guided endonucleases
    • Bae, S., Park, J. & Kim, J.S. Cas-OFFinder: a fast and versatile algorithm that searches for potential off-target sites of Cas9 RNA-guided endonucleases. Bioinformatics 30, 1473-1475 (2014).
    • (2014) Bioinformatics , vol.30 , pp. 1473-1475
    • Bae, S.1    Park, J.2    Kim, J.S.3
  • 14
    • 84923846574 scopus 로고    scopus 로고
    • Digenome-seq: Genome-wide profiling of CRISPR-Cas9 off-target effects in human cells
    • Kim, D. et al. Digenome-seq: genome-wide profiling of CRISPR-Cas9 off-target effects in human cells. Nat. Methods 12, 237-243 (2015).
    • (2015) Nat. Methods , vol.12 , pp. 237-243
    • Kim, D.1
  • 15
    • 84952943845 scopus 로고    scopus 로고
    • Rationally engineered Cas9 nucleases with improved specificity
    • Slaymaker, I.M. et al. Rationally engineered Cas9 nucleases with improved specificity. Science 351, 84-88 (2016).
    • (2016) Science , vol.351 , pp. 84-88
    • Slaymaker, I.M.1
  • 16
    • 84963941043 scopus 로고    scopus 로고
    • High-fidelity CRISPR-Cas9 nucleases with no detectable genome-wide off-target effects
    • Kleinstiver, B.P. et al. High-fidelity CRISPR-Cas9 nucleases with no detectable genome-wide off-target effects. Nature 529, 490-495 (2016).
    • (2016) Nature , vol.529 , pp. 490-495
    • Kleinstiver, B.P.1
  • 17
    • 84969195094 scopus 로고    scopus 로고
    • Nucleosomes impede Cas9 access to DNA in vivo and in vitro
    • Horlbeck, M.A. et al. Nucleosomes impede Cas9 access to DNA in vivo and in vitro. eLife 5, e12677 (2016).
    • (2016) ELife , vol.5 , pp. e12677
    • Horlbeck, M.A.1
  • 18
    • 84971539053 scopus 로고    scopus 로고
    • Nucleosome breathing and remodeling constrain CRISPR-Cas9 function
    • Isaac, R.S. et al. Nucleosome breathing and remodeling constrain CRISPR-Cas9 function. eLife 5, e13450 (2016).
    • (2016) ELife , vol.5 , pp. e13450
    • Isaac, R.S.1
  • 19
    • 84901834420 scopus 로고    scopus 로고
    • Highly efficient RNA-guided genome editing in human cells via delivery of purified Cas9 ribonucleoproteins
    • Kim, S., Kim, D., Cho, S.W., Kim, J. & Kim, J.S. Highly efficient RNA-guided genome editing in human cells via delivery of purified Cas9 ribonucleoproteins. Genome Res. 24, 1012-1019 (2014).
    • (2014) Genome Res. , vol.24 , pp. 1012-1019
    • Kim, S.1    Kim, D.2    Cho, S.W.3    Kim, J.4    Kim, J.S.5
  • 20
    • 84896929630 scopus 로고    scopus 로고
    • Improving CRISPR-Cas nuclease specificity using truncated guide RNAs
    • Fu, Y., Sander, J.D., Reyon, D., Cascio, V.M. & Joung, J.K. Improving CRISPR-Cas nuclease specificity using truncated guide RNAs. Nat. Biotechnol. 32, 279-284 (2014).
    • (2014) Nat. Biotechnol. , vol.32 , pp. 279-284
    • Fu, Y.1    Sander, J.D.2    Reyon, D.3    Cascio, V.M.4    Joung, J.K.5
  • 21
    • 84923221641 scopus 로고    scopus 로고
    • Unbiased detection of off-target cleavage by CRISPR-Cas9 and TALENs using integrase-defective lentiviral vectors
    • Wang, X. et al. Unbiased detection of off-target cleavage by CRISPR-Cas9 and TALENs using integrase-defective lentiviral vectors. Nat. Biotechnol. 33, 175-178 (2015).
    • (2015) Nat. Biotechnol. , vol.33 , pp. 175-178
    • Wang, X.1
  • 22
    • 84923266604 scopus 로고    scopus 로고
    • GUIDE-seq enables genome-wide profiling of off-target cleavage by CRISPR-Cas nucleases
    • Tsai, S.Q. et al. GUIDE-seq enables genome-wide profiling of off-target cleavage by CRISPR-Cas nucleases. Nat. Biotechnol. 33, 187-197 (2015).
    • (2015) Nat. Biotechnol. , vol.33 , pp. 187-197
    • Tsai, S.Q.1
  • 23
    • 84923275611 scopus 로고    scopus 로고
    • Genome-wide detection of DNA double-stranded breaks induced by engineered nucleases
    • Frock, R.L. et al. Genome-wide detection of DNA double-stranded breaks induced by engineered nucleases. Nat. Biotechnol. 33, 179-186 (2015).
    • (2015) Nat. Biotechnol. , vol.33 , pp. 179-186
    • Frock, R.L.1
  • 24
    • 78651271733 scopus 로고    scopus 로고
    • Integrative genomics viewer
    • Robinson, J.T. et al. Integrative genomics viewer. Nat. Biotechnol. 29, 24-26 (2011).
    • (2011) Nat. Biotechnol. , vol.29 , pp. 24-26
    • Robinson, J.T.1
  • 25
    • 84874663256 scopus 로고    scopus 로고
    • TALENs and ZFNs are associated with different mutation signatures
    • Kim, Y., Kweon, J. & Kim, J.S. TALENs and ZFNs are associated with different mutation signatures. Nat. Methods 10, 185 (2013).
    • (2013) Nat. Methods , vol.10 , pp. 185
    • Kim, Y.1    Kweon, J.2    Kim, J.S.3
  • 26
    • 84903516238 scopus 로고    scopus 로고
    • Microhomology-based choice of Cas9 nuclease target sites
    • Bae, S., Kweon, J., Kim, H.S. & Kim, J.S. Microhomology-based choice of Cas9 nuclease target sites. Nat. Methods 11, 705-706 (2014).
    • (2014) Nat. Methods , vol.11 , pp. 705-706
    • Bae, S.1    Kweon, J.2    Kim, H.S.3    Kim, J.S.4
  • 27
    • 28844475180 scopus 로고    scopus 로고
    • Gateway vectors for the production of combinatorially-tagged His6-MBP fusion proteins in the cytoplasm and periplasm of Escherichia coli
    • Nallamsetty, S., Austin, B.P., Penrose, K.J. & Waugh, D.S. Gateway vectors for the production of combinatorially-tagged His6-MBP fusion proteins in the cytoplasm and periplasm of Escherichia coli. Protein Sci. 14, 2964-2971 (2005).
    • (2005) Protein Sci. , vol.14 , pp. 2964-2971
    • Nallamsetty, S.1    Austin, B.P.2    Penrose, K.J.3    Waugh, D.S.4
  • 28
    • 84891710947 scopus 로고    scopus 로고
    • Analysis of off-target effects of CRISPR/Cas-derived RNA-guided endonucleases and nickases
    • Cho, S.W. et al. Analysis of off-target effects of CRISPR/Cas-derived RNA-guided endonucleases and nickases. Genome Res. 24, 132-141 (2014).
    • (2014) Genome Res. , vol.24 , pp. 132-141
    • Cho, S.W.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.