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Volumn 3, Issue 2, 2016, Pages 199-207

Genomic Recoding Broadly Obstructs the Propagation of Horizontally Transferred Genetic Elements

Author keywords

[No Author keywords available]

Indexed keywords

ELEMENT; ESCHERICHIA COLI PROTEIN;

EID: 84978879822     PISSN: 24054712     EISSN: 24054720     Source Type: Journal    
DOI: 10.1016/j.cels.2016.06.009     Document Type: Article
Times cited : (37)

References (55)
  • 1
    • 84880712059 scopus 로고    scopus 로고
    • Exploring the costs of horizontal gene transfer
    • Baltrus, D.A., Exploring the costs of horizontal gene transfer. Trends Ecol. Evol. 28 (2013), 489–495.
    • (2013) Trends Ecol. Evol. , vol.28 , pp. 489-495
    • Baltrus, D.A.1
  • 2
    • 77954018796 scopus 로고    scopus 로고
    • Virus stalls Genzyme plant
    • Bethencourt, V., Virus stalls Genzyme plant. Nat. Biotechnol., 27, 2009, 681.
    • (2009) Nat. Biotechnol. , vol.27 , pp. 681
    • Bethencourt, V.1
  • 3
  • 5
    • 84922678329 scopus 로고    scopus 로고
    • Intrinsic biocontainment: multiplex genome safeguards combine transcriptional and recombinational control of essential yeast genes
    • Cai, Y., Agmon, N., Choi, W.J., Ubide, A., Stracquadanio, G., Caravelli, K., Hao, H., Bader, J.S., Boeke, J.D., Intrinsic biocontainment: multiplex genome safeguards combine transcriptional and recombinational control of essential yeast genes. Proc Natl Acad Sci U S A 112 (2015), 1803–1808.
    • (2015) Proc Natl Acad Sci U S A , vol.112 , pp. 1803-1808
    • Cai, Y.1    Agmon, N.2    Choi, W.J.3    Ubide, A.4    Stracquadanio, G.5    Caravelli, K.6    Hao, H.7    Bader, J.S.8    Boeke, J.D.9
  • 6
    • 0004161721 scopus 로고    scopus 로고
    • The Bacteriophages
    • 2nd ed. Oxford University Press
    • Calendar, R., The Bacteriophages. 2nd ed., 2006, Oxford University Press.
    • (2006)
    • Calendar, R.1
  • 7
    • 84960941501 scopus 로고    scopus 로고
    • Estimating the biotech sector's contribution to the US economy
    • Carlson, R., Estimating the biotech sector's contribution to the US economy. Nat. Biotechnol. 34 (2016), 247–255.
    • (2016) Nat. Biotechnol. , vol.34 , pp. 247-255
    • Carlson, R.1
  • 8
    • 84955192252 scopus 로고    scopus 로고
    • ‘Deadman’ and ‘Passcode’ microbial kill switches for bacterial containment
    • Chan, C.T., Lee, J.W., Cameron, D.E., Bashor, C.J., Collins, J.J., ‘Deadman’ and ‘Passcode’ microbial kill switches for bacterial containment. Nat Chem Biol. 12 (2016), 82–86.
    • (2016) Nat Chem Biol. , vol.12 , pp. 82-86
    • Chan, C.T.1    Lee, J.W.2    Cameron, D.E.3    Bashor, C.J.4    Collins, J.J.5
  • 10
    • 0036301383 scopus 로고    scopus 로고
    • Delineating the site of interaction on the pIII protein of filamentous bacteriophage fd with the F-pilus of Escherichia coli
    • Deng, L.W., Perham, R.N., Delineating the site of interaction on the pIII protein of filamentous bacteriophage fd with the F-pilus of Escherichia coli. J. Mol. Biol. 319 (2002), 603–614.
    • (2002) J. Mol. Biol. , vol.319 , pp. 603-614
    • Deng, L.W.1    Perham, R.N.2
  • 12
    • 0027221640 scopus 로고
    • Rates of spontaneous mutation among RNA viruses
    • Drake, J.W., Rates of spontaneous mutation among RNA viruses. Proc. Natl. Acad. Sci. U S A 90 (1993), 4171–4175.
    • (1993) Proc. Natl. Acad. Sci. U S A , vol.90 , pp. 4171-4175
    • Drake, J.W.1
  • 13
    • 0023770831 scopus 로고
    • Transfer ribonucleic acid-mediated suppression of termination codons in Escherichia coli
    • Eggertsson, G., Söll, D., Transfer ribonucleic acid-mediated suppression of termination codons in Escherichia coli. Microbiol. Rev. 52 (1988), 354–374.
    • (1988) Microbiol. Rev. , vol.52 , pp. 354-374
    • Eggertsson, G.1    Söll, D.2
  • 15
    • 0028335140 scopus 로고
    • Analysis of the sequence and gene products of the transfer region of the F sex factor
    • Frost, L.S., Ippen-Ihler, K., Skurray, R.A., Analysis of the sequence and gene products of the transfer region of the F sex factor. Microbiol. Rev. 58 (1994), 162–210.
    • (1994) Microbiol. Rev. , vol.58 , pp. 162-210
    • Frost, L.S.1    Ippen-Ihler, K.2    Skurray, R.A.3
  • 16
    • 84919701495 scopus 로고    scopus 로고
    • Rapid editing and evolution of bacterial genomes using libraries of synthetic DNA
    • Gallagher, R.R., Li, Z., Lewis, A.O., Isaacs, F.J., Rapid editing and evolution of bacterial genomes using libraries of synthetic DNA. Nat. Protoc. 9 (2014), 2301–2316.
    • (2014) Nat. Protoc. , vol.9 , pp. 2301-2316
    • Gallagher, R.R.1    Li, Z.2    Lewis, A.O.3    Isaacs, F.J.4
  • 17
    • 84922664743 scopus 로고    scopus 로고
    • Multilayered genetic safeguards limit growth of microorganisms to defined environments
    • Gallagher, R.R., Patel, J.R., Interiano, A.L., Rovner, A.J., Isaacs, F.J., Multilayered genetic safeguards limit growth of microorganisms to defined environments. Nucleic Acids Res. 43 (2015), 1945–1954.
    • (2015) Nucleic Acids Res. , vol.43 , pp. 1945-1954
    • Gallagher, R.R.1    Patel, J.R.2    Interiano, A.L.3    Rovner, A.J.4    Isaacs, F.J.5
  • 19
    • 0022389446 scopus 로고
    • Phage lambda gene Q antiterminator recognizes RNA polymerase near the promoter and accelerates it through a pause site
    • Grayhack, E.J., Yang, X.J., Lau, L.F., Roberts, J.W., Phage lambda gene Q antiterminator recognizes RNA polymerase near the promoter and accelerates it through a pause site. Cell 42 (1985), 259–269.
    • (1985) Cell , vol.42 , pp. 259-269
    • Grayhack, E.J.1    Yang, X.J.2    Lau, L.F.3    Roberts, J.W.4
  • 22
    • 84928433497 scopus 로고    scopus 로고
    • Mechanisms of ribosome rescue in bacteria
    • Keiler, K.C., Mechanisms of ribosome rescue in bacteria. Nat. Rev. Microbiol. 13 (2015), 285–297.
    • (2015) Nat. Rev. Microbiol. , vol.13 , pp. 285-297
    • Keiler, K.C.1
  • 23
    • 0035234558 scopus 로고    scopus 로고
    • Rewiring the keyboard: evolvability of the genetic code
    • Knight, R.D., Freeland, S.J., Landweber, L.F., Rewiring the keyboard: evolvability of the genetic code. Nat. Rev. Genet. 2 (2001), 49–58.
    • (2001) Nat. Rev. Genet. , vol.2 , pp. 49-58
    • Knight, R.D.1    Freeland, S.J.2    Landweber, L.F.3
  • 24
    • 48249135779 scopus 로고    scopus 로고
    • Regulated programmed lysis of recombinant Salmonella in host tissues to release protective antigens and confer biological containment
    • Kong, W., Wanda, S.Y., Zhang, X., Bollen, W., Tinge, S.A., Roland, K.L., Curtiss, R. 3rd, Regulated programmed lysis of recombinant Salmonella in host tissues to release protective antigens and confer biological containment. Proc. Natl. Acad. Sci. U S A 105 (2008), 9361–9366.
    • (2008) Proc. Natl. Acad. Sci. U S A , vol.105 , pp. 9361-9366
    • Kong, W.1    Wanda, S.Y.2    Zhang, X.3    Bollen, W.4    Tinge, S.A.5    Roland, K.L.6    Curtiss, R.7
  • 30
    • 84926003341 scopus 로고    scopus 로고
    • Precise manipulation of bacterial chromosomes by conjugative assembly genome engineering
    • Ma, N.J., Moonan, D.W., Isaacs, F.J., Precise manipulation of bacterial chromosomes by conjugative assembly genome engineering. Nat. Protoc. 9 (2014), 2285–2300.
    • (2014) Nat. Protoc. , vol.9 , pp. 2285-2300
    • Ma, N.J.1    Moonan, D.W.2    Isaacs, F.J.3
  • 34
    • 0036299014 scopus 로고    scopus 로고
    • Bacteriophage Mu genome sequence: analysis and comparison with Mu-like prophages in Haemophilus, Neisseria and Deinococcus
    • Morgan, G.J., Hatfull, G.F., Casjens, S., Hendrix, R.W., Bacteriophage Mu genome sequence: analysis and comparison with Mu-like prophages in Haemophilus, Neisseria and Deinococcus. J. Mol. Biol. 317 (2002), 337–359.
    • (2002) J. Mol. Biol. , vol.317 , pp. 337-359
    • Morgan, G.J.1    Hatfull, G.F.2    Casjens, S.3    Hendrix, R.W.4
  • 35
    • 0028784315 scopus 로고
    • The traY gene product and integration host factor stimulate Escherichia coli DNA helicase I-catalyzed nicking at the F plasmid oriT
    • Nelson, W.C., Howard, M.T., Sherman, J.A., Matson, S.W., The traY gene product and integration host factor stimulate Escherichia coli DNA helicase I-catalyzed nicking at the F plasmid oriT. J. Biol. Chem. 270 (1995), 28374–28380.
    • (1995) J. Biol. Chem. , vol.270 , pp. 28374-28380
    • Nelson, W.C.1    Howard, M.T.2    Sherman, J.A.3    Matson, S.W.4
  • 36
    • 84906337251 scopus 로고    scopus 로고
    • Influenza A virus attenuation by codon deoptimization of the NS gene for vaccine development
    • Nogales, A., Baker, S.F., Ortiz-Riaño, E., Dewhurst, S., Topham, D.J., Martínez-Sobrido, L., Influenza A virus attenuation by codon deoptimization of the NS gene for vaccine development. J. Virol. 88 (2014), 10525–10540.
    • (2014) J. Virol. , vol.88 , pp. 10525-10540
    • Nogales, A.1    Baker, S.F.2    Ortiz-Riaño, E.3    Dewhurst, S.4    Topham, D.J.5    Martínez-Sobrido, L.6
  • 37
    • 0034682335 scopus 로고    scopus 로고
    • Lateral gene transfer and the nature of bacterial innovation
    • Ochman, H., Lawrence, J.G., Groisman, E.A., Lateral gene transfer and the nature of bacterial innovation. Nature 405 (2000), 299–304.
    • (2000) Nature , vol.405 , pp. 299-304
    • Ochman, H.1    Lawrence, J.G.2    Groisman, E.A.3
  • 38
    • 0015633551 scopus 로고
    • Inhibition of formation of Escherichia coli mating pairs by f1 and MS2 bacteriophages as determined with a Coulter counter
    • Ou, J.T., Inhibition of formation of Escherichia coli mating pairs by f1 and MS2 bacteriophages as determined with a Coulter counter. J. Bacteriol. 114 (1973), 1108–1115.
    • (1973) J. Bacteriol. , vol.114 , pp. 1108-1115
    • Ou, J.T.1
  • 40
    • 0015117774 scopus 로고
    • Stages in phage R17 infection. V. Phage eclipse and the role of F pili
    • Paranchych, W., Ainsworth, S.K., Dick, A.J., Krahn, P.M., Stages in phage R17 infection. V. Phage eclipse and the role of F pili. Virology 45 (1971), 615–628.
    • (1971) Virology , vol.45 , pp. 615-628
    • Paranchych, W.1    Ainsworth, S.K.2    Dick, A.J.3    Krahn, P.M.4
  • 41
    • 0034075043 scopus 로고    scopus 로고
    • Engineering bacteria for bioremediation
    • Pieper, D.H., Reineke, W., Engineering bacteria for bioremediation. Curr Opin Biotechnol. 11 (2000), 262–270.
    • (2000) Curr Opin Biotechnol. , vol.11 , pp. 262-270
    • Pieper, D.H.1    Reineke, W.2
  • 42
    • 0035377246 scopus 로고    scopus 로고
    • Dual system to reinforce biological containment of recombinant bacteria designed for rhizoremediation
    • Ronchel, M.C., Ramos, J.L., Dual system to reinforce biological containment of recombinant bacteria designed for rhizoremediation. Appl. Environ. Microbiol. 67 (2001), 2649–2656.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 2649-2656
    • Ronchel, M.C.1    Ramos, J.L.2
  • 44
    • 0023660351 scopus 로고
    • lambda N antitermination system: functional analysis of phage interactions with the host NusA protein
    • Schauer, A.T., Carver, D.L., Bigelow, B., Baron, L.S., Friedman, D.I., lambda N antitermination system: functional analysis of phage interactions with the host NusA protein. J. Mol. Biol. 194 (1987), 679–690.
    • (1987) J. Mol. Biol. , vol.194 , pp. 679-690
    • Schauer, A.T.1    Carver, D.L.2    Bigelow, B.3    Baron, L.S.4    Friedman, D.I.5
  • 45
    • 84863612293 scopus 로고    scopus 로고
    • Synthetic constructs in/for the environment: managing the interplay between natural and engineered Biology
    • Schmidt, M., de Lorenzo, V., Synthetic constructs in/for the environment: managing the interplay between natural and engineered Biology. FEBS Lett. 586 (2012), 2199–2206.
    • (2012) FEBS Lett. , vol.586 , pp. 2199-2206
    • Schmidt, M.1    de Lorenzo, V.2
  • 46
    • 49049103327 scopus 로고    scopus 로고
    • The role of alternative genetic codes in viral evolution and emergence
    • Shackelton, L.A., Holmes, E.C., The role of alternative genetic codes in viral evolution and emergence. J. Theor. Biol. 254 (2008), 128–134.
    • (2008) J. Theor. Biol. , vol.254 , pp. 128-134
    • Shackelton, L.A.1    Holmes, E.C.2
  • 48
    • 84870200615 scopus 로고    scopus 로고
    • Evolutionary implications of horizontal gene transfer
    • Syvanen, M., Evolutionary implications of horizontal gene transfer. Annu. Rev. Genet. 46 (2012), 341–358.
    • (2012) Annu. Rev. Genet. , vol.46 , pp. 341-358
    • Syvanen, M.1
  • 49
    • 23944475626 scopus 로고    scopus 로고
    • Mechanisms of, and barriers to, horizontal gene transfer between bacteria
    • Thomas, C.M., Nielsen, K.M., Mechanisms of, and barriers to, horizontal gene transfer between bacteria. Nat. Rev. Microbiol. 3 (2005), 711–721.
    • (2005) Nat. Rev. Microbiol. , vol.3 , pp. 711-721
    • Thomas, C.M.1    Nielsen, K.M.2
  • 50
    • 0023506940 scopus 로고
    • Incompatibility group P plasmids: genetics, evolution, and use in genetic manipulation
    • Thomas, C.M., Smith, C.A., Incompatibility group P plasmids: genetics, evolution, and use in genetic manipulation. Annu. Rev. Microbiol. 41 (1987), 77–101.
    • (1987) Annu. Rev. Microbiol. , vol.41 , pp. 77-101
    • Thomas, C.M.1    Smith, C.A.2
  • 51
    • 0019127851 scopus 로고
    • Nucleotide sequence of the filamentous bacteriophage M13 DNA genome: comparison with phage fd
    • van Wezenbeek, P.M., Hulsebos, T.J., Schoenmakers, J.G., Nucleotide sequence of the filamentous bacteriophage M13 DNA genome: comparison with phage fd. Gene 11 (1980), 129–148.
    • (1980) Gene , vol.11 , pp. 129-148
    • van Wezenbeek, P.M.1    Hulsebos, T.J.2    Schoenmakers, J.G.3
  • 53
    • 68949161807 scopus 로고    scopus 로고
    • Programming cells by multiplex genome engineering and accelerated evolution
    • Wang, H.H., Isaacs, F.J., Carr, P.A., Sun, Z.Z., Xu, G., Forest, C.R., Church, G.M., Programming cells by multiplex genome engineering and accelerated evolution. Nature 460 (2009), 894–898.
    • (2009) Nature , vol.460 , pp. 894-898
    • Wang, H.H.1    Isaacs, F.J.2    Carr, P.A.3    Sun, Z.Z.4    Xu, G.5    Forest, C.R.6    Church, G.M.7
  • 54
    • 0020334380 scopus 로고
    • An Mr 29000 protein is essential for mini-F maintenance in E. coli
    • Watson, L.A., Phua, S.H., Bergquist, P.L., Lane, H.E., An Mr 29000 protein is essential for mini-F maintenance in E. coli. Gene 19 (1982), 173–178.
    • (1982) Gene , vol.19 , pp. 173-178
    • Watson, L.A.1    Phua, S.H.2    Bergquist, P.L.3    Lane, H.E.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.