메뉴 건너뛰기




Volumn 48, Issue 9, 2016, Pages 1014-1023

DNMT3A and TET2 compete and cooperate to repress lineage-specific transcription factors in hematopoietic stem cells

Author keywords

[No Author keywords available]

Indexed keywords

DNA METHYLTRANSFERASE 3A; DNA (CYTOSINE 5) METHYLTRANSFERASE; DNA BINDING PROTEIN; ERYTHROID KRUPPEL-LIKE FACTOR; ERYTHROPOIETIN RECEPTOR; KRUPPEL LIKE FACTOR; ONCOPROTEIN; TET2 PROTEIN, MOUSE;

EID: 84978680214     PISSN: 10614036     EISSN: 15461718     Source Type: Journal    
DOI: 10.1038/ng.3610     Document Type: Article
Times cited : (196)

References (67)
  • 1
    • 66149146320 scopus 로고    scopus 로고
    • Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1
    • Tahiliani, M. et al. Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1. Science 324, 930-935 (2009).
    • (2009) Science , vol.324 , pp. 930-935
    • Tahiliani, M.1
  • 2
    • 80054097425 scopus 로고    scopus 로고
    • Replication-dependent loss of 5-hydroxymethylcytosine in mouse preimplantation embryos
    • Inoue, A. & Zhang, Y. Replication-dependent loss of 5-hydroxymethylcytosine in mouse preimplantation embryos. Science 334, 194 (2011).
    • (2011) Science , vol.334 , pp. 194
    • Inoue, A.1    Zhang, Y.2
  • 3
    • 78649906060 scopus 로고    scopus 로고
    • DNMT3A mutations in acute myeloid leukemia
    • Ley, T.J. et al. DNMT3A mutations in acute myeloid leukemia. N. Engl. J. Med. 363, 2424-2433 (2010).
    • (2010) N. Engl. J. Med. , vol.363 , pp. 2424-2433
    • Ley, T.J.1
  • 4
    • 79960255863 scopus 로고    scopus 로고
    • Recurrent DNMT3A mutations in patients with myelodysplastic syndromes
    • Walter, M.J. et al. Recurrent DNMT3A mutations in patients with myelodysplastic syndromes. Leukemia 25, 1153-1158 (2011).
    • (2011) Leukemia , vol.25 , pp. 1153-1158
    • Walter, M.J.1
  • 5
    • 84873732313 scopus 로고    scopus 로고
    • The molecular profle of adult T-cell acute lymphoblastic leukemia: Mutations in RUNX1 and DNMT3A are associated with poor prognosis in T-ALL
    • Grossmann, V. et al. The molecular profle of adult T-cell acute lymphoblastic leukemia: mutations in RUNX1 and DNMT3A are associated with poor prognosis in T-ALL. Genes Chromosom. Cancer 52, 410-422 (2013).
    • (2013) Genes Chromosom. Cancer , vol.52 , pp. 410-422
    • Grossmann, V.1
  • 6
    • 84855508998 scopus 로고    scopus 로고
    • ETV6 mutations in early immature human T cell leukemias
    • Van Vlierberghe, P. et al. ETV6 mutations in early immature human T cell leukemias. J. Exp. Med. 208, 2571-2579 (2011).
    • (2011) J. Exp. Med. , vol.208 , pp. 2571-2579
    • Van Vlierberghe, P.1
  • 7
    • 79956308473 scopus 로고    scopus 로고
    • Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells
    • Pastor, W.A. et al. Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells. Nature 473, 394-397 (2011).
    • (2011) Nature , vol.473 , pp. 394-397
    • Pastor, W.A.1
  • 8
    • 67651065502 scopus 로고    scopus 로고
    • Genetic characterization of TET1, TET2, and TET3 alterations in myeloid malignancies
    • Abdel-Wahab, O. et al. Genetic characterization of TET1, TET2, and TET3 alterations in myeloid malignancies. Blood 114, 144-147 (2009).
    • (2009) Blood , vol.114 , pp. 144-147
    • Abdel-Wahab, O.1
  • 9
    • 66249137734 scopus 로고    scopus 로고
    • Mutation in TET2 in myeloid cancers
    • Delhommeau, F. et al. Mutation in TET2 in myeloid cancers. N. Engl. J. Med. 360, 2289-2301 (2009).
    • (2009) N. Engl. J. Med. , vol.360 , pp. 2289-2301
    • Delhommeau, F.1
  • 10
    • 84878372012 scopus 로고    scopus 로고
    • Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia
    • Cancer Genome Atlas Research Network. Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia. N. Engl. J. Med. 368, 2059-2074 (2013).
    • (2013) N. Engl. J. Med. , vol.368 , pp. 2059-2074
  • 11
    • 84920024296 scopus 로고    scopus 로고
    • Clonal hematopoiesis and blood-cancer risk inferred from blood DNA sequence
    • Genovese, G. et al. Clonal hematopoiesis and blood-cancer risk inferred from blood DNA sequence. N. Engl. J. Med. 371, 2477-2487 (2014).
    • (2014) N. Engl. J. Med. , vol.371 , pp. 2477-2487
    • Genovese, G.1
  • 12
    • 84920053873 scopus 로고    scopus 로고
    • Age-related clonal hematopoiesis associated with adverse outcomes
    • Jaiswal, S. et al. Age-related clonal hematopoiesis associated with adverse outcomes. N. Engl. J. Med. 371, 2488-2498 (2014).
    • (2014) N. Engl. J. Med. , vol.371 , pp. 2488-2498
    • Jaiswal, S.1
  • 13
    • 84930003179 scopus 로고    scopus 로고
    • Age-related mutations associated with clonal hematopoietic expansion and malignancies
    • Xie, M. et al. Age-related mutations associated with clonal hematopoietic expansion and malignancies. Nat. Med. 20, 1472-1478 (2014).
    • (2014) Nat. Med. , vol.20 , pp. 1472-1478
    • Xie, M.1
  • 14
    • 84864255882 scopus 로고    scopus 로고
    • The origin and evolution of mutations in acute myeloid leukemia
    • Welch, J.S. et al. The origin and evolution of mutations in acute myeloid leukemia. Cell 150, 264-278 (2012).
    • (2012) Cell , vol.150 , pp. 264-278
    • Welch, J.S.1
  • 15
    • 84894245627 scopus 로고    scopus 로고
    • Identifcation of pre-leukaemic haematopoietic stem cells in acute leukaemia
    • Shlush, L.I. et al. Identifcation of pre-leukaemic haematopoietic stem cells in acute leukaemia. Nature 506, 328-333 (2014).
    • (2014) Nature , vol.506 , pp. 328-333
    • Shlush, L.I.1
  • 16
    • 84894304555 scopus 로고    scopus 로고
    • Preleukemic mutations in human acute myeloid leukemia affect epigenetic regulators and persist in remission
    • Corces-Zimmerman, M.R., Hong, W.J., Weissman, I.L., Medeiros, B.C. & Majeti, R. Preleukemic mutations in human acute myeloid leukemia affect epigenetic regulators and persist in remission. Proc. Natl. Acad. Sci. USA 111, 2548-2553 (2014).
    • (2014) Proc. Natl. Acad. Sci. USA , vol.111 , pp. 2548-2553
    • Corces-Zimmerman, M.R.1    Hong, W.J.2    Weissman, I.L.3    Medeiros, B.C.4    Majeti, R.5
  • 17
    • 84555207349 scopus 로고    scopus 로고
    • Dnmt3a is essential for hematopoietic stem cell differentiation
    • Challen, G.A. et al. Dnmt3a is essential for hematopoietic stem cell differentiation. Nat. Genet. 44, 23-31 (2012).
    • (2012) Nat. Genet. , vol.44 , pp. 23-31
    • Challen, G.A.1
  • 18
    • 84921468426 scopus 로고    scopus 로고
    • Dnmt3a loss predisposes murine hematopoietic stem cells to malignant transformation
    • Mayle, A. et al. Dnmt3a loss predisposes murine hematopoietic stem cells to malignant transformation. Blood 125, 629-638 (2015).
    • (2015) Blood , vol.125 , pp. 629-638
    • Mayle, A.1
  • 19
    • 84921517163 scopus 로고    scopus 로고
    • Enforced differentiation of Dnmt3a-null bone marrow leads to failure with c-Kit mutations driving leukemic transformation
    • Celik, H. et al. Enforced differentiation of Dnmt3a-null bone marrow leads to failure with c-Kit mutations driving leukemic transformation. Blood 125, 619-628 (2015).
    • (2015) Blood , vol.125 , pp. 619-628
    • Celik, H.1
  • 20
    • 80052284526 scopus 로고    scopus 로고
    • Ten-Eleven-Translocation 2 (TET2) negatively regulates homeostasis and differentiation of hematopoietic stem cells in mice
    • Ko, M. et al. Ten-Eleven-Translocation 2 (TET2) negatively regulates homeostasis and differentiation of hematopoietic stem cells in mice. Proc. Natl. Acad. Sci. USA 108, 14566-14571 (2011).
    • (2011) Proc. Natl. Acad. Sci. USA , vol.108 , pp. 14566-14571
    • Ko, M.1
  • 21
    • 79960064353 scopus 로고    scopus 로고
    • Tet2 loss leads to increased hematopoietic stem cell self-renewal and myeloid transformation
    • Moran-Crusio, K. et al. Tet2 loss leads to increased hematopoietic stem cell self-renewal and myeloid transformation. Cancer Cell 20, 11-24 (2011).
    • (2011) Cancer Cell , vol.20 , pp. 11-24
    • Moran-Crusio, K.1
  • 22
    • 80052285127 scopus 로고    scopus 로고
    • Deletion of Tet2 in mice leads to dysregulated hematopoietic stem cells and subsequent development of myeloid malignancies
    • Li, Z. et al. Deletion of Tet2 in mice leads to dysregulated hematopoietic stem cells and subsequent development of myeloid malignancies. Blood 118, 4509-4518 (2011).
    • (2011) Blood , vol.118 , pp. 4509-4518
    • Li, Z.1
  • 23
    • 80051596015 scopus 로고    scopus 로고
    • TET2 inactivation results in pleiotropic hematopoietic abnormalities in mouse and is a recurrent event during human lymphomagenesis
    • Quivoron, C. et al. TET2 inactivation results in pleiotropic hematopoietic abnormalities in mouse and is a recurrent event during human lymphomagenesis. Cancer Cell 20, 25-38 (2011).
    • (2011) Cancer Cell , vol.20 , pp. 25-38
    • Quivoron, C.1
  • 24
    • 78650175023 scopus 로고    scopus 로고
    • Impaired hydroxylation of 5-methylcytosine in myeloid cancers with mutant TET2
    • Ko, M. et al. Impaired hydroxylation of 5-methylcytosine in myeloid cancers with mutant TET2. Nature 468, 839-843 (2010).
    • (2010) Nature , vol.468 , pp. 839-843
    • Ko, M.1
  • 25
    • 78650019179 scopus 로고    scopus 로고
    • Leukemic IDH1 and IDH2 mutations result in a hypermethylation phenotype, disrupt TET2 function, and impair hematopoietic differentiation
    • Figueroa, M.E. et al. Leukemic IDH1 and IDH2 mutations result in a hypermethylation phenotype, disrupt TET2 function, and impair hematopoietic differentiation. Cancer Cell 18, 553-567 (2010).
    • (2010) Cancer Cell , vol.18 , pp. 553-567
    • Figueroa, M.E.1
  • 26
    • 84892540146 scopus 로고    scopus 로고
    • Hydroxymethylation at gene regulatory regions directs stem/early progenitor cell commitment during erythropoiesis
    • Madzo, J. et al. Hydroxymethylation at gene regulatory regions directs stem/early progenitor cell commitment during erythropoiesis. Cell Rep. 6, 231-244 (2014).
    • (2014) Cell Rep. , vol.6 , pp. 231-244
    • Madzo, J.1
  • 27
    • 84898545028 scopus 로고    scopus 로고
    • The R882H DNMT3A mutation associated with AML dominantly inhibits wild-type DNMT3A by blocking its ability to form active tetramers
    • Russler-Germain, D.A. et al. The R882H DNMT3A mutation associated with AML dominantly inhibits wild-type DNMT3A by blocking its ability to form active tetramers. Cancer Cell 25, 442-454 (2014).
    • (2014) Cancer Cell , vol.25 , pp. 442-454
    • Russler-Germain, D.A.1
  • 28
    • 84895829862 scopus 로고    scopus 로고
    • Recurrent mutations in epigenetic regulators, RHOA and FYN kinase in peripheral T cell lymphomas
    • Palomero, T. et al. Recurrent mutations in epigenetic regulators, RHOA and FYN kinase in peripheral T cell lymphomas. Nat. Genet. 46, 166-170 (2014).
    • (2014) Nat. Genet. , vol.46 , pp. 166-170
    • Palomero, T.1
  • 29
    • 84855718050 scopus 로고    scopus 로고
    • TET2 and DNMT3A mutations in human T-cell lymphoma
    • Couronné, L., Bastard, C. & Bernard, O.A. TET2 and DNMT3A mutations in human T-cell lymphoma. N. Engl. J. Med. 366, 95-96 (2012).
    • (2012) N. Engl. J. Med. , vol.366 , pp. 95-96
    • Couronné, L.1    Bastard, C.2    Bernard, O.A.3
  • 30
    • 84895809383 scopus 로고    scopus 로고
    • Somatic RHOA mutation in angioimmunoblastic T cell lymphoma
    • Sakata-Yanagimoto, M. et al. Somatic RHOA mutation in angioimmunoblastic T cell lymphoma. Nat. Genet. 46, 171-175 (2014).
    • (2014) Nat. Genet. , vol.46 , pp. 171-175
    • Sakata-Yanagimoto, M.1
  • 31
    • 84960407497 scopus 로고    scopus 로고
    • R882H mutant and Tet2 inactivation cooperate in the deregulation of DNA methylation control to induce lymphoid malignancies in mice
    • R882H mutant and Tet2 inactivation cooperate in the deregulation of DNA methylation control to induce lymphoid malignancies in mice. Leukemia 30, 1388-1398 (2016).
    • (2016) Leukemia , vol.30 , pp. 1388-1398
    • Scourzic, L.1
  • 32
    • 35848943273 scopus 로고    scopus 로고
    • Hematopoietic fngerprints: An expression database of stem cells and their progeny
    • Chambers, S.M. et al. Hematopoietic fngerprints: an expression database of stem cells and their progeny. Cell Stem Cell 1, 578-591 (2007).
    • (2007) Cell Stem Cell , vol.1 , pp. 578-591
    • Chambers, S.M.1
  • 33
    • 84870543736 scopus 로고    scopus 로고
    • Novel roles for KLF1 in erythropoiesis revealed by mRNA-seq
    • Tallack, M.R. et al. Novel roles for KLF1 in erythropoiesis revealed by mRNA-seq. Genome Res. 22, 2385-2398 (2012).
    • (2012) Genome Res. , vol.22 , pp. 2385-2398
    • Tallack, M.R.1
  • 34
    • 77955155544 scopus 로고    scopus 로고
    • A global role for KLF1 in erythropoiesis revealed by ChIP-seq in primary erythroid cells
    • Tallack, M.R. et al. A global role for KLF1 in erythropoiesis revealed by ChIP-seq in primary erythroid cells. Genome Res. 20, 1052-1063 (2010).
    • (2010) Genome Res. , vol.20 , pp. 1052-1063
    • Tallack, M.R.1
  • 35
    • 84893744924 scopus 로고    scopus 로고
    • C/EBPα is required for long-term self-renewal and lineage priming of hematopoietic stem cells and for the maintenance of epigenetic confgurations in multipotent progenitors
    • Hasemann, M.S. et al. C/EBPα is required for long-term self-renewal and lineage priming of hematopoietic stem cells and for the maintenance of epigenetic confgurations in multipotent progenitors. PLoS Genet. 10, e1004079 (2014).
    • (2014) PLoS Genet. , vol.10 , pp. e1004079
    • Hasemann, M.S.1
  • 36
    • 84894413913 scopus 로고    scopus 로고
    • Stage-specifc control of early B cell development by the transcription factor Ikaros
    • Schwickert, T.A. et al. Stage-specifc control of early B cell development by the transcription factor Ikaros. Nat. Immunol. 15, 283-293 (2014).
    • (2014) Nat. Immunol. , vol.15 , pp. 283-293
    • Schwickert, T.A.1
  • 37
    • 84878273239 scopus 로고    scopus 로고
    • Induction of pluripotency in mouse somatic cells with lineage specifers
    • Shu, J. et al. Induction of pluripotency in mouse somatic cells with lineage specifers. Cell 153, 963-975 (2013).
    • (2013) Cell , vol.153 , pp. 963-975
    • Shu, J.1
  • 38
    • 0344496106 scopus 로고    scopus 로고
    • Priming the hematopoietic pump
    • Orkin, S.H. Priming the hematopoietic pump. Immunity 19, 633-634 (2003).
    • (2003) Immunity , vol.19 , pp. 633-634
    • Orkin, S.H.1
  • 39
    • 84879126792 scopus 로고    scopus 로고
    • Structure-guided design of a selective BCL-X(L) inhibitor
    • Lessene, G. et al. Structure-guided design of a selective BCL-X(L) inhibitor. Nat. Chem. Biol. 9, 390-397 (2013).
    • (2013) Nat. Chem. Biol. , vol.9 , pp. 390-397
    • Lessene, G.1
  • 40
    • 84891372425 scopus 로고    scopus 로고
    • Large conserved domains of low DNA methylation maintained by Dnmt3a
    • Jeong, M. et al. Large conserved domains of low DNA methylation maintained by Dnmt3a. Nat. Genet. 46, 17-23 (2014).
    • (2014) Nat. Genet. , vol.46 , pp. 17-23
    • Jeong, M.1
  • 41
    • 84882884517 scopus 로고    scopus 로고
    • Charting a dynamic DNA methylation landscape of the human genome
    • Ziller, M.J. et al. Charting a dynamic DNA methylation landscape of the human genome. Nature 500, 477-481 (2013).
    • (2013) Nature , vol.500 , pp. 477-481
    • Ziller, M.J.1
  • 42
    • 84929461859 scopus 로고    scopus 로고
    • Loss of TET2 in hematopoietic cells leads to DNA hypermethylation of active enhancers and induction of leukemogenesis
    • Rasmussen, K.D. et al. Loss of TET2 in hematopoietic cells leads to DNA hypermethylation of active enhancers and induction of leukemogenesis. Genes Dev. 29, 910-922 (2015).
    • (2015) Genes Dev. , vol.29 , pp. 910-922
    • Rasmussen, K.D.1
  • 43
    • 84907419194 scopus 로고    scopus 로고
    • Chromatin state dynamics during blood formation
    • Lara-Astiaso, D. et al. Chromatin state dynamics during blood formation. Science 345, 943-949 (2014).
    • (2014) Science , vol.345 , pp. 943-949
    • Lara-Astiaso, D.1
  • 44
    • 77749277177 scopus 로고    scopus 로고
    • The behaviour of 5-hydroxymethylcytosine in bisulfte sequencing
    • Huang, Y. et al. The behaviour of 5-hydroxymethylcytosine in bisulfte sequencing. PLoS One 5, e8888 (2010).
    • (2010) PLoS One , vol.5 , pp. e8888
    • Huang, Y.1
  • 45
    • 84869075314 scopus 로고    scopus 로고
    • The anti-CMS technique for genome-wide mapping of 5-hydroxymethylcytosine
    • Huang, Y., Pastor, W.A., Zepeda-Martínez, J.A. & Rao, A. The anti-CMS technique for genome-wide mapping of 5-hydroxymethylcytosine. Nat. Protoc. 7, 1897-1908 (2012).
    • (2012) Nat. Protoc. , vol.7 , pp. 1897-1908
    • Huang, Y.1    Pastor, W.A.2    Zepeda-Martínez, J.A.3    Rao, A.4
  • 46
    • 84876946045 scopus 로고    scopus 로고
    • Genome-wide analysis reveals TET-and TDG-dependent 5-methylcytosine oxidation dynamics
    • Shen, L. et al. Genome-wide analysis reveals TET-and TDG-dependent 5-methylcytosine oxidation dynamics. Cell 153, 692-706 (2013).
    • (2013) Cell , vol.153 , pp. 692-706
    • Shen, L.1
  • 47
    • 79956302047 scopus 로고    scopus 로고
    • TET1 and hydroxymethylcytosine in transcription and DNA methylation fdelity
    • Williams, K. et al. TET1 and hydroxymethylcytosine in transcription and DNA methylation fdelity. Nature 473, 343-348 (2011).
    • (2011) Nature , vol.473 , pp. 343-348
    • Williams, K.1
  • 48
    • 79956292024 scopus 로고    scopus 로고
    • Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells
    • Wu, H. et al. Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells. Nature 473, 389-393 (2011).
    • (2011) Nature , vol.473 , pp. 389-393
    • Wu, H.1
  • 49
    • 79956323623 scopus 로고    scopus 로고
    • Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation
    • Ficz, G. et al. Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation. Nature 473, 398-402 (2011).
    • (2011) Nature , vol.473 , pp. 398-402
    • Ficz, G.1
  • 50
    • 84925116257 scopus 로고    scopus 로고
    • Dnmt3a and Dnmt3b have overlapping and distinct functions in hematopoietic stem cells
    • Challen, G.A. et al. Dnmt3a and Dnmt3b have overlapping and distinct functions in hematopoietic stem cells. Cell Stem Cell 15, 350-364 (2014).
    • (2014) Cell Stem Cell , vol.15 , pp. 350-364
    • Challen, G.A.1
  • 51
    • 84905988908 scopus 로고    scopus 로고
    • Dissecting the dynamic changes of 5-hydroxymethylcytosine in T-cell development and differentiation
    • Tsagaratou, A. et al. Dissecting the dynamic changes of 5-hydroxymethylcytosine in T-cell development and differentiation. Proc. Natl. Acad. Sci. USA 111, E3306-E3315 (2014).
    • (2014) Proc. Natl. Acad. Sci. USA , vol.111 , pp. E3306-E3315
    • Tsagaratou, A.1
  • 52
    • 84952874773 scopus 로고    scopus 로고
    • Combined loss of Tet1 and Tet2 promotes B cell, but not myeloid malignancies, in mice
    • Zhao, Z. et al. Combined loss of Tet1 and Tet2 promotes B cell, but not myeloid malignancies, in mice. Cell Rep. 13, 1692-1704 (2015).
    • (2015) Cell Rep. , vol.13 , pp. 1692-1704
    • Zhao, Z.1
  • 53
    • 84948446391 scopus 로고    scopus 로고
    • Acute loss of TET function results in aggressive myeloid cancer in mice
    • An, J. et al. Acute loss of TET function results in aggressive myeloid cancer in mice. Nat. Commun. 6, 10071 (2015).
    • (2015) Nat. Commun. , vol.6 , pp. 10071
    • An, J.1
  • 54
    • 84929895270 scopus 로고    scopus 로고
    • TET1 is a tumor suppressor of hematopoietic malignancy
    • Cimmino, L. et al. TET1 is a tumor suppressor of hematopoietic malignancy. Nat. Immunol. 16, 653-662 (2015).
    • (2015) Nat. Immunol. , vol.16 , pp. 653-662
    • Cimmino, L.1
  • 55
    • 84938411464 scopus 로고    scopus 로고
    • Molecular basis for 5-carboxycytosine recognition by RNA polymerase II elongation complex
    • Wang, L. et al. Molecular basis for 5-carboxycytosine recognition by RNA polymerase II elongation complex. Nature 523, 621-625 (2015).
    • (2015) Nature , vol.523 , pp. 621-625
    • Wang, L.1
  • 56
    • 84885172419 scopus 로고    scopus 로고
    • Mapping cellular hierarchy by single-cell analysis of the cell surface repertoire
    • Guo, G. et al. Mapping cellular hierarchy by single-cell analysis of the cell surface repertoire. Cell Stem Cell 13, 492-505 (2013).
    • (2013) Cell Stem Cell , vol.13 , pp. 492-505
    • Guo, G.1
  • 57
    • 84937726240 scopus 로고    scopus 로고
    • Primed and ready: Understanding lineage commitment through single cell analysis
    • Nimmo, R.A., May, G.E. & Enver, T. Primed and ready: understanding lineage commitment through single cell analysis. Trends Cell Biol. 25, 459-467 (2015).
    • (2015) Trends Cell Biol. , vol.25 , pp. 459-467
    • Nimmo, R.A.1    May, G.E.2    Enver, T.3
  • 58
    • 84871647883 scopus 로고    scopus 로고
    • Flow cytometry analysis of murine hematopoietic stem cells
    • Mayle, A., Luo, M., Jeong, M. & Goodell, M.A. Flow cytometry analysis of murine hematopoietic stem cells. Cytometry A 83, 27-37 (2013).
    • (2013) Cytometry A , vol.83 , pp. 27-37
    • Mayle, A.1    Luo, M.2    Jeong, M.3    Goodell, M.A.4
  • 59
    • 84886382161 scopus 로고    scopus 로고
    • Analysis of RNA-Seq data with TopHat and Cuffinks for genome-wide expression analysis of jasmonate-treated plants and plant cultures
    • Pollier, J., Rombauts, S. & Goossens, A. Analysis of RNA-Seq data with TopHat and Cuffinks for genome-wide expression analysis of jasmonate-treated plants and plant cultures. Methods Mol. Biol. 1011, 305-315 (2013).
    • (2013) Methods Mol. Biol. , vol.1011 , pp. 305-315
    • Pollier, J.1    Rombauts, S.2    Goossens, A.3
  • 60
    • 53849146020 scopus 로고    scopus 로고
    • Model-based analysis of ChIP-Seq (MACS)
    • Zhang, Y. et al. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 9, R137 (2008).
    • (2008) Genome Biol. , vol.9 , pp. R137
    • Zhang, Y.1
  • 61
    • 84899049695 scopus 로고    scopus 로고
    • MOABS: Model based analysis of bisulfte sequencing data
    • Sun, D. et al. MOABS: model based analysis of bisulfte sequencing data. Genome Biol. 15, R38 (2014).
    • (2014) Genome Biol. , vol.15 , pp. R38
    • Sun, D.1
  • 62
    • 79956006215 scopus 로고    scopus 로고
    • QDMR: A quantitative method for identifcation of differentially methylated regions by entropy
    • Zhang, Y. et al. QDMR: a quantitative method for identifcation of differentially methylated regions by entropy. Nucleic Acids Res. 39, e58 (2011).
    • (2011) Nucleic Acids Res. , vol.39 , pp. e58
    • Zhang, Y.1
  • 63
    • 84949227547 scopus 로고    scopus 로고
    • BEDTools: The Swiss-army tool for genome feature analysis
    • Quinlan, A.R. BEDTools: the Swiss-army tool for genome feature analysis. Curr. Protoc. Bioinformatics 47, 11.12.1-11.12.34 (2014).
    • (2014) Curr. Protoc. Bioinformatics , vol.47 , pp. 11121-111234
    • Quinlan, A.R.1
  • 64
    • 68949141599 scopus 로고    scopus 로고
    • BSMAP: Whole genome bisulfte sequence MAPping program
    • Xi, Y. & Li, W. BSMAP: whole genome bisulfte sequence MAPping program. BMC Bioinformatics 10, 232 (2009).
    • (2009) BMC Bioinformatics , vol.10 , pp. 232
    • Xi, Y.1    Li, W.2
  • 65
    • 84873351389 scopus 로고    scopus 로고
    • DANPOS: Dynamic analysis of nucleosome position and occupancy by sequencing
    • Chen, K. et al. DANPOS: dynamic analysis of nucleosome position and occupancy by sequencing. Genome Res. 23, 341-351 (2013).
    • (2013) Genome Res. , vol.23 , pp. 341-351
    • Chen, K.1
  • 66
    • 27344435774 scopus 로고    scopus 로고
    • Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profles
    • Subramanian, A. et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profles. Proc. Natl. Acad. Sci. USA 102, 15545-15550 (2005).
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 15545-15550
    • Subramanian, A.1
  • 67
    • 41349115432 scopus 로고    scopus 로고
    • The DAVID Gene Functional Classifcation Tool: A novel biological module-centric algorithm to functionally analyze large gene lists
    • Huang, D.W. et al. The DAVID Gene Functional Classifcation Tool: a novel biological module-centric algorithm to functionally analyze large gene lists. Genome Biol. 8, R183 (2007).
    • (2007) Genome Biol. , vol.8 , pp. R183
    • Huang, D.W.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.