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Volumn 22, Issue 12, 2012, Pages 2385-2398

Novel roles for KLF1 in erythropoiesis revealed by mRNA-seq

Author keywords

[No Author keywords available]

Indexed keywords

E1A ASSOCIATED P300 PROTEIN; KRUPPEL LIKE FACTOR; KRUPPEL LIKE FACTOR 1; MESSENGER RNA; TRANSCRIPTION FACTOR GATA 1; TRANSCRIPTOME; UNCLASSIFIED DRUG;

EID: 84870543736     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.135707.111     Document Type: Article
Times cited : (81)

References (72)
  • 3
    • 84866937220 scopus 로고    scopus 로고
    • Inferring direct DNA binding from ChIP-seq
    • (in press). doi: 10.1093/nar/gks433
    • Bailey TL, Machanick P. 2012. Inferring direct DNA binding from ChIP-seq. Nucleic Acids Res (in press). doi: 10.1093/nar/gks433.
    • (2012) Nucleic Acids Res
    • Bailey, T.L.1    Machanick, P.2
  • 7
    • 80052978224 scopus 로고    scopus 로고
    • Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
    • Cabili MN, Trapnell C, Goff L, Koziol M, Tazon-Vega B, Regev A, Rinn JL. 2011. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev 25: 1915-1927.
    • (2011) Genes Dev , vol.25 , pp. 1915-1927
    • Cabili, M.N.1    Trapnell, C.2    Goff, L.3    Koziol, M.4    Tazon-Vega, B.5    Regev, A.6    Rinn, J.L.7
  • 8
    • 0035048250 scopus 로고    scopus 로고
    • Unanticipated repression function linked to erythroid Krüppel-like factor
    • DOI 10.1128/MCB.21.9.3118-3125.2001
    • Chen X, Bieker JJ. 2001. Unanticipated repression function linked to erythroid Krüppel-like factor. Mol Cell Biol 21: 3118-3125. (Pubitemid 32298378)
    • (2001) Molecular and Cellular Biology , vol.21 , Issue.9 , pp. 3118-3125
    • Chen, X.1    Bieker, J.J.2
  • 9
    • 8644288177 scopus 로고    scopus 로고
    • Stage-specific repression by the EKLF transcriptional activator
    • DOI 10.1128/MCB.24.23.10416-10424.2004
    • Chen X, Bieker JJ. 2004. Stage-specific repression by the EKLF transcriptional activator. Mol Cell Biol 24: 10416-10424. (Pubitemid 39507878)
    • (2004) Molecular and Cellular Biology , vol.24 , Issue.23 , pp. 10416-10424
    • Chen, X.1    Bieker, J.J.2
  • 10
    • 70449696134 scopus 로고    scopus 로고
    • Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression
    • Cheng Y, Wu W, Kumar SA, Yu D, Deng W, Tripic T, King DC, Chen KB, Zhang Y, Drautz D, et al. 2009. Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression. Genome Res 19: 2172-2184.
    • (2009) Genome Res , vol.19 , pp. 2172-2184
    • Cheng, Y.1    Wu, W.2    Kumar, S.A.3    Yu, D.4    Deng, W.5    Tripic, T.6    King, D.C.7    Chen, K.B.8    Zhang, Y.9    Drautz, D.10
  • 14
    • 55249115567 scopus 로고    scopus 로고
    • A network of Krüppel-like Factors (Klfs). Klf8 is repressed by Klf3 and activated by Klf1 in vivo
    • Eaton SA, Funnell AP, Sue N, Nicholas H, Pearson RC, Crossley M. 2008. A network of Krüppel-like Factors (Klfs). Klf8 is repressed by Klf3 and activated by Klf1 in vivo. J Biol Chem 283: 26937-26947.
    • (2008) J Biol Chem , vol.283 , pp. 26937-26947
    • Eaton, S.A.1    Funnell, A.P.2    Sue, N.3    Nicholas, H.4    Pearson, R.C.5    Crossley, M.6
  • 15
    • 81355146972 scopus 로고    scopus 로고
    • Ultrastructural study of transcription factories in mouse erythroblasts
    • Eskiw CH, Fraser P. 2011. Ultrastructural study of transcription factories in mouse erythroblasts. J Cell Sci 124: 3676-3683.
    • (2011) J Cell Sci , vol.124 , pp. 3676-3683
    • Eskiw, C.H.1    Fraser, P.2
  • 16
    • 0028174097 scopus 로고
    • Analyses of b-thalassemia mutant DNA interactions with erythroid Krüppel-like factor (EKLF), an erythroid cell-specific transcription factor
    • Feng WC, Southwood CM, Bieker JJ. 1994. Analyses of b-thalassemia mutant DNA interactions with erythroid Krüppel-like factor (EKLF), an erythroid cell-specific transcription factor. J Biol Chem 269: 1493-1500.
    • (1994) J Biol Chem , vol.269 , pp. 1493-1500
    • Feng, W.C.1    Southwood, C.M.2    Bieker, J.J.3
  • 18
    • 60849131761 scopus 로고    scopus 로고
    • Mir-144 selectively regulates embryonic α-hemoglobin synthesis during primitive erythropoiesis
    • Fu YF, Du TT, Dong M, Zhu KY, Jing CB, Zhang Y, Wang L, Fan HB, Chen Y, Jin Y, et al. 2009. Mir-144 selectively regulates embryonic α-hemoglobin synthesis during primitive erythropoiesis. Blood 113: 1340-1349.
    • (2009) Blood , vol.113 , pp. 1340-1349
    • Fu, Y.F.1    Du, T.T.2    Dong, M.3    Zhu, K.Y.4    Jing, C.B.5    Zhang, Y.6    Wang, L.7    Fan, H.B.8    Chen, Y.9    Jin, Y.10
  • 21
    • 77955801615 scopus 로고    scopus 로고
    • Galaxy: A comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
    • doi: 10.1186/gb-2010-11-8-r86
    • Goecks J, Nekrutenko A, Taylor J. 2010. Galaxy: A comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol 11: R86. doi: 10.1186/gb-2010-11-8-r86.
    • (2010) Genome Biol , vol.11
    • Goecks, J.1    Nekrutenko, A.2    Taylor, J.3
  • 22
    • 83455220200 scopus 로고    scopus 로고
    • From stem cell to red cell: Regulation of erythropoiesis at multiple levels by multiple proteins, RNAs and chromatin modifications
    • Hattangadi SM, Wong P, Zhang L, Flygare J, Lodish HF. 2011. From stem cell to red cell: Regulation of erythropoiesis at multiple levels by multiple proteins, RNAs and chromatin modifications. Blood 118: 6258-6268.
    • (2011) Blood , vol.118 , pp. 6258-6268
    • Hattangadi, S.M.1    Wong, P.2    Zhang, L.3    Flygare, J.4    Lodish, H.F.5
  • 24
    • 58549112996 scopus 로고    scopus 로고
    • Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists
    • Huang da W, Sherman BT, Lempicki RA. 2009a. Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res 37: 1-13.
    • (2009) Nucleic Acids Res , vol.37 , pp. 1-13
    • Huang Da, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 25
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang da W, Sherman BT, Lempicki RA. 2009b. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 4: 44-57.
    • (2009) Nat Protoc , vol.4 , pp. 44-57
    • Huang Da, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 26
    • 40249094627 scopus 로고    scopus 로고
    • Enucleation of cultured mouse fetal erythroblasts requires Rac GTPases and mDia2
    • DOI 10.1038/ncb1693, PII NCB1693
    • Ji P, Jayapal SR, Lodish HF. 2008. Enucleation of cultured mouse fetal erythroblasts requires Rac GTPases and mDia2. Nat Cell Biol 10: 314-321. (Pubitemid 351331018)
    • (2008) Nature Cell Biology , vol.10 , Issue.3 , pp. 314-321
    • Ji, P.1    Jayapal, S.R.2    Lodish, H.F.3
  • 27
    • 78649830918 scopus 로고    scopus 로고
    • Histone deacetylase 2 is required for chromatin condensation and subsequent enucleation of cultured mouse fetal erythroblasts
    • Ji P, Yeh V, Ramirez T, Murata-Hori M, Lodish HF. 2010. Histone deacetylase 2 is required for chromatin condensation and subsequent enucleation of cultured mouse fetal erythroblasts. Haematologica 95: 2013-2021.
    • (2010) Haematologica , vol.95 , pp. 2013-2021
    • Ji, P.1    Yeh, V.2    Ramirez, T.3    Murata-Hori, M.4    Lodish, H.F.5
  • 28
    • 79959591086 scopus 로고    scopus 로고
    • Formation of mammalian erythrocytes: Chromatin condensation and enucleation
    • Ji P, Murata-Hori M, Lodish HF. 2011. Formation of mammalian erythrocytes: Chromatin condensation and enucleation. Trends Cell Biol 21: 409-415.
    • (2011) Trends Cell Biol , vol.21 , pp. 409-415
    • Ji, P.1    Murata-Hori, M.2    Lodish, H.F.3
  • 29
    • 77955131763 scopus 로고    scopus 로고
    • Genome-wide identification of TAL1's functional targets: Insights into its mechanisms of action in primary erythroid cells
    • Kassouf MT, Hughes JR, Taylor S, McGowan SJ, Soneji S, Green AL, Vyas P, Porcher C. 2010. Genome-wide identification of TAL1's functional targets: Insights into its mechanisms of action in primary erythroid cells. Genome Res 20: 1064-1083.
    • (2010) Genome Res , vol.20 , pp. 1064-1083
    • Kassouf, M.T.1    Hughes, J.R.2    Taylor, S.3    McGowan, S.J.4    Soneji, S.5    Green, A.L.6    Vyas, P.7    Porcher, C.8
  • 30
    • 78049388997 scopus 로고    scopus 로고
    • Vesicle trafficking plays a novel role in erythroblast enucleation
    • Keerthivasan G, Small S, Liu H, Wickrema A, Crispino JD. 2010. Vesicle trafficking plays a novel role in erythroblast enucleation. Blood 116: 3331-3340.
    • (2010) Blood , vol.116 , pp. 3331-3340
    • Keerthivasan, G.1    Small, S.2    Liu, H.3    Wickrema, A.4    Crispino, J.D.5
  • 32
    • 79958117256 scopus 로고    scopus 로고
    • MEME-ChIP: Motif analysis of large DNA datasets
    • Machanick P, Bailey TL. 2011. MEME-ChIP: Motif analysis of large DNA datasets. Bioinformatics 27: 1696-1697.
    • (2011) Bioinformatics , vol.27 , pp. 1696-1697
    • Machanick, P.1    Bailey, T.L.2
  • 34
    • 58149263382 scopus 로고    scopus 로고
    • A composite intronic element directs dynamic binding of the progesterone receptor and GATA-2
    • Magklara A, Smith CL. 2009. A composite intronic element directs dynamic binding of the progesterone receptor and GATA-2. Mol Endocrinol 23: 61-73.
    • (2009) Mol Endocrinol , vol.23 , pp. 61-73
    • Magklara, A.1    Smith, C.L.2
  • 36
    • 0027211845 scopus 로고
    • A novel, erythroid cell-specific murine transcription factor that binds to the CACCC element and is related to the Kruppel family of nuclear proteins
    • Miller IJ, Bieker JJ. 1993. A novel, erythroid cell-specific murine transcription factor that binds to the CACCC element and is related to the Krüppel family of nuclear proteins. Mol Cell Biol 13: 2776-2786. (Pubitemid 23133950)
    • (1993) Molecular and Cellular Biology , vol.13 , Issue.5 , pp. 2776-2786
    • Miller, I.J.1    Bieker, J.J.2
  • 38
    • 0029010790 scopus 로고
    • Defective haematopoiesis in fetal liver resulting from inactivation of the EKLF gene
    • Nuez B, Michalovich D, Bygrave A, Ploemacher R, Grosveld F. 1995. Defective haematopoiesis in fetal liver resulting from inactivation of the EKLF gene. Nature 375: 316-318.
    • (1995) Nature , vol.375 , pp. 316-318
    • Nuez, B.1    Michalovich, D.2    Bygrave, A.3    Ploemacher, R.4    Grosveld, F.5
  • 40
    • 0028990264 scopus 로고
    • Lethal b-thalassaemia in mice lacking the erythroid CACCC-transcription factor EKLF
    • Perkins AC, Sharpe AH, Orkin SH. 1995. Lethal b-thalassaemia in mice lacking the erythroid CACCC-transcription factor EKLF. Nature 375: 318-322.
    • (1995) Nature , vol.375 , pp. 318-322
    • Perkins, A.C.1    Sharpe, A.H.2    Orkin, S.H.3
  • 41
  • 43
    • 33846057724 scopus 로고    scopus 로고
    • NCBI reference sequences (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins
    • DOI 10.1093/nar/gkl842
    • Pruitt KD, Tatusova T, Maglott DR. 2007. NCBI reference sequences (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res 35: D61-D65. (Pubitemid 46056171)
    • (2007) Nucleic Acids Research , vol.35 , Issue.SUPPL. 1
    • Pruitt, K.D.1    Tatusova, T.2    Maglott, D.R.3
  • 45
    • 38549169460 scopus 로고    scopus 로고
    • Development of a heme protein structure - Electrochemical function database
    • DOI 10.1093/nar/gkm814
    • Reedy CJ, Elvekrog MM, Gibney BR. 2008. Development of a heme protein structure-electrochemical function database. Nucleic Acids Res 36: D307-D313. (Pubitemid 351149742)
    • (2008) Nucleic Acids Research , vol.36 , Issue.SUPPL. 1
    • Reedy, C.J.1    Elvekrog, M.M.2    Gibney, B.R.3
  • 47
    • 80051941094 scopus 로고    scopus 로고
    • Identification of novel transcripts in annotated genomes using RNA-Seq
    • Roberts A, Pimentel H, Trapnell C, Pachter L. 2011a. Identification of novel transcripts in annotated genomes using RNA-Seq. Bioinformatics 27: 2325-2329.
    • (2011) Bioinformatics , vol.27 , pp. 2325-2329
    • Roberts, A.1    Pimentel, H.2    Trapnell, C.3    Pachter, L.4
  • 48
    • 79952709611 scopus 로고    scopus 로고
    • Improving RNA-Seq expression estimates by correcting for fragment bias
    • doi: 10.1186/gb-2011-12-3-r22.
    • Roberts A, Trapnell C, Donaghey J, Rinn JL, Pachter L. 2011b. Improving RNA-Seq expression estimates by correcting for fragment bias. Genome Biol 12: R22. doi: 10.1186/gb-2011-12-3-r22.
    • (2011) Genome Biol , vol.12
    • Roberts, A.1    Trapnell, C.2    Donaghey, J.3    Rinn, J.L.4    Pachter, L.5
  • 51
    • 80052153840 scopus 로고    scopus 로고
    • The multifunctional role of EKLF/KLF1 during erythropoiesis
    • Siatecka M, Bieker JJ. 2011. The multifunctional role of EKLF/KLF1 during erythropoiesis. Blood 118: 2044-2054
    • (2011) Blood , vol.118 , pp. 2044-2054
    • Siatecka, M.1    Bieker, J.J.2
  • 52
    • 37549066702 scopus 로고    scopus 로고
    • Sumoylation of EKLF promotes transcriptional repression and is involved in inhibition of megakaryopoiesis
    • Siatecka M, Xue L, Bieker JJ. 2007. Sumoylation of EKLF promotes transcriptional repression and is involved in inhibition of megakaryopoiesis. Mol Cell Biol 27: 8547-8560.
    • (2007) Mol Cell Biol , vol.27 , pp. 8547-8560
    • Siatecka, M.1    Xue, L.2    Bieker, J.J.3
  • 53
    • 52649088204 scopus 로고    scopus 로고
    • Mutations in EKLF/KLF1 form the molecular basis of the rare blood group in(Lu) phenotype
    • Singleton BK, Burton NM, Green C, Brady RL, Anstee DJ. 2008. Mutations in EKLF/KLF1 form the molecular basis of the rare blood group In(Lu) phenotype. Blood 112: 2081-2088.
    • (2008) Blood , vol.112 , pp. 2081-2088
    • Singleton, B.K.1    Burton, N.M.2    Green, C.3    Brady, R.L.4    Anstee, D.J.5
  • 58
    • 79952009920 scopus 로고    scopus 로고
    • KLF1 directly coordinates almost all aspects of terminal erythroid differentiation
    • Tallack MR, Perkins AC. 2010. KLF1 directly coordinates almost all aspects of terminal erythroid differentiation. IUBMB Life 62: 886-890.
    • (2010) IUBMB Life , vol.62 , pp. 886-890
    • Tallack, M.R.1    Perkins, A.C.2
  • 59
    • 34247572407 scopus 로고    scopus 로고
    • INK4c
    • DOI 10.1016/j.jmb.2007.02.109, PII S0022283607003427
    • Tallack MR, Keys JR, Perkins AC. 2007. Erythroid Krüppel-like factor regulates the G1 cyclin dependent kinase inhibitor p18INK4c. J Mol Biol 369: 313-321. (Pubitemid 46678040)
    • (2007) Journal of Molecular Biology , vol.369 , Issue.2 , pp. 313-321
    • Tallack, M.R.1    Keys, J.R.2    Perkins, A.C.3
  • 60
    • 68949094072 scopus 로고    scopus 로고
    • EKLF/KLF1 controls cell cycle entry via direct regulation of E2f2
    • Tallack MR, Keys JR, Humbert PO, Perkins AC. 2009. EKLF/KLF1 controls cell cycle entry via direct regulation of E2f2. J Biol Chem 284: 20966-20974.
    • (2009) J Biol Chem , vol.284 , pp. 20966-20974
    • Tallack, M.R.1    Keys, J.R.2    Humbert, P.O.3    Perkins, A.C.4
  • 62
    • 3142683813 scopus 로고    scopus 로고
    • Apoptotic mechanisms in the control of erythropoiesis
    • DOI 10.1038/sj.leu.2403383
    • Testa U. 2004. Apoptotic mechanisms in the control of erythropoiesis. Leukemia 18: 1176-1199. (Pubitemid 39023128)
    • (2004) Leukemia , vol.18 , Issue.7 , pp. 1176-1199
    • Testa, U.1
  • 63
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: Discovering splice junctions with RNA-Seq
    • Trapnell C, Pachter L, Salzberg SL. 2009. TopHat: Discovering splice junctions with RNA-Seq. Bioinformatics 25: 1105-1111.
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 70
    • 0035099483 scopus 로고    scopus 로고
    • Site-specific acetylation by p300 or CREB binding protein regulates erythroid Krüppel-like factor transcriptional activity via its interaction with the SWI-SNF complex
    • DOI 10.1128/MCB.21.7.2413-2422.2001
    • Zhang W, Kadam S, Emerson BM, Bieker JJ. 2001. Site-specific acetylation by p300 or CREB binding protein regulates erythroid Krüppel-like factor transcriptional activity via its interaction with the SWI-SNF complex. Mol Cell Biol 21: 2413-2422. (Pubitemid 32222094)
    • (2001) Molecular and Cellular Biology , vol.21 , Issue.7 , pp. 2413-2422
    • Zhang, W.1    Kadam, S.2    Emerson, B.M.3    Bieker, J.J.4
  • 71
    • 0344826470 scopus 로고    scopus 로고
    • Role of Ras signaling in erythroid differentiation of mouse fetal liver cells: Functional analysis by a flow cytometry-based novel culture system
    • DOI 10.1182/blood-2003-05-1479
    • Zhang J, Socolovsky M, Gross AW, Lodish HF. 2003. Role of Ras signaling in erythroid differentiation of mouse fetal liver cells: Functional analysis by a flow cytometry-based novel culture system. Blood 102: 3938-3946. (Pubitemid 37486974)
    • (2003) Blood , vol.102 , Issue.12 , pp. 3938-3946
    • Zhang, J.1    Socolovsky, M.2    Gross, A.W.3    Lodish, H.F.4
  • 72
    • 78651485828 scopus 로고    scopus 로고
    • MiR-191 regulates mouse erythroblast enucleation by down-regulating Riok3 and Mxi1
    • Zhang L, Flygare J, Wong P, Lim B, Lodish HF. 2011. miR-191 regulates mouse erythroblast enucleation by down-regulating Riok3 and Mxi1. Genes Dev 25: 119-124.
    • (2011) Genes Dev , vol.25 , pp. 119-124
    • Zhang, L.1    Flygare, J.2    Wong, P.3    Lim, B.4    Lodish, H.F.5


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