Analysis of RNA-Seq data with TopHat and cufflinks for genome-wide expression analysis of jasmonate-treated plants and plant cultures

Methods in Molecular Biology

Volumn 1011, Issue , 2013, Pages 305-315

  Pollier, Jacob ^a,b   Rombauts, Stephane ^a,b   Goossens, Alain ^a,b  

^a DEPARTMENT OF PLANT SYSTEMS BIOLOGY   (Belgium)

^b GHENT UNIVERSITY   (Belgium)

Author keywords

Cuf flinks; FastQC; Gene expression; RNA sequencing; RNA Seq; TopHat; Transcript profiling; Transcriptome

Indexed keywords

JASMONIC ACID; TRANSCRIPTOME; CYCLOPENTANE DERIVATIVE; OXYLIPIN; PHYTOHORMONE; PLANT RNA;

ARTICLE; COMPUTER PROGRAM; GENE EXPRESSION; GENE MAPPING; NONHUMAN; PLANT GENOME; PRIORITY JOURNAL; QUALITY CONTROL; RNA ANALYSIS; RNA SEQUENCE; CHROMOSOME MAP; CULTURE TECHNIQUE; GENE EXPRESSION PROFILING; GENETICS; HIGH THROUGHPUT SEQUENCING; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS;

CHROMOSOME MAPPING; CULTURE TECHNIQUES; CYCLOPENTANES; GENE EXPRESSION PROFILING; GENOME, PLANT; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; OXYLIPINS; PLANT GROWTH REGULATORS; RNA, PLANT; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, RNA; SOFTWARE; TRANSCRIPTOME;

EID: 84886382161     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-62703-414-2_24     Document Type: Article

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