-
1
-
-
0024475207
-
High abundance of viruses found in aquatic environments
-
CrossRef PubMed
-
Bergh, O., Borsheim, K.Y., Bratbak, G. and Heldal, M. (1989) High abundance of viruses found in aquatic environments. Nature 340, 467-468 CrossRef PubMed
-
(1989)
Nature
, vol.340
, pp. 467-468
-
-
Bergh, O.1
Borsheim, K.Y.2
Bratbak, G.3
Heldal, M.4
-
2
-
-
0034053843
-
Virioplankton: Viruses in aquatic ecosystems
-
CrossRef PubMed
-
Wommack, K.E. and Colwell, R.R. (2000) Virioplankton: viruses in aquatic ecosystems. Microbiol. Mol. Biol. Rev. 64, 69-114 CrossRef PubMed
-
(2000)
Microbiol. Mol. Biol. Rev.
, vol.64
, pp. 69-114
-
-
Wommack, K.E.1
Colwell, R.R.2
-
3
-
-
84947491821
-
A century of the phage: Past, present and future
-
CrossRef PubMed
-
Salmond, G.P. and Fineran, P.C. (2015) A century of the phage: past, present and future. Nat. Rev. Microbiol. 13, 777-786 CrossRef PubMed
-
(2015)
Nat. Rev. Microbiol.
, vol.13
, pp. 777-786
-
-
Salmond, G.P.1
Fineran, P.C.2
-
4
-
-
34547652871
-
Analysis of the phage sequence space: The benefit of structured information
-
CrossRef PubMed
-
Lima-Mendez, G., Toussaint, A. and Leplae, R. (2007) Analysis of the phage sequence space: The benefit of structured information. Virology 365, 241-249 CrossRef PubMed
-
(2007)
Virology
, vol.365
, pp. 241-249
-
-
Lima-Mendez, G.1
Toussaint, A.2
Leplae, R.3
-
5
-
-
84929153360
-
Remarkable mechanisms in microbes to resist phage infections
-
CrossRef
-
Dy, R.L., Richter, C., Salmond, G.P.C. and Fineran, P.C. (2014) Remarkable mechanisms in microbes to resist phage infections. Ann. Rev. Virol. 1, 307-331 CrossRef
-
(2014)
Ann. Rev. Virol.
, vol.1
, pp. 307-331
-
-
Dy, R.L.1
Richter, C.2
Salmond, G.P.C.3
Fineran, P.C.4
-
6
-
-
84884286187
-
Revenge of the phages: Defeating bacterial defences
-
CrossRef
-
Samson, J.E., Magadan, A.H., Sabri, M. and Moineau, S. (2013) Revenge of the phages: defeating bacterial defences. Nat. Rev. Micriobiol. 11, 675-687 CrossRef
-
(2013)
Nat. Rev. Micriobiol.
, vol.11
, pp. 675-687
-
-
Samson, J.E.1
Magadan, A.H.2
Sabri, M.3
Moineau, S.4
-
7
-
-
84902533278
-
Unravelling the structural and mechanistic basis of CRISPR-Cas systems
-
CrossRef PubMed
-
van der Oost, J, Westra, E.R., Jackson, R.N. and Wiedenheft, B. (2014) Unravelling the structural and mechanistic basis of CRISPR-Cas systems. Nat. Rev. Microbiol. 12, 479-492 CrossRef PubMed
-
(2014)
Nat. Rev. Microbiol.
, vol.12
, pp. 479-492
-
-
Van Der, O.J.1
Westra, E.R.2
Jackson, R.N.3
Wiedenheft, B.4
-
8
-
-
84870718176
-
Memory of viral infections by CRISPR-Cas adaptive immune systems: Acquisition of new information
-
CrossRef PubMed
-
Fineran, P.C. and Charpentier, E. (2012) Memory of viral infections by CRISPR-Cas adaptive immune systems: acquisition of new information. Virology 434, 202-209 CrossRef PubMed
-
(2012)
Virology
, vol.434
, pp. 202-209
-
-
Fineran, P.C.1
Charpentier, E.2
-
9
-
-
34250662138
-
The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats
-
CrossRef PubMed
-
Grissa, I., Vergnaud, G. and Pourcel, C. (2007) The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats. BMC Bioinformatics 8, 172 CrossRef PubMed
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 172
-
-
Grissa, I.1
Vergnaud, G.2
Pourcel, C.3
-
10
-
-
84944449180
-
An updated evolutionary classification of CRISPR-Cas systems
-
CrossRef PubMed
-
Makarova, K.S., Wolf, Y.I., Alkhnbashi, O.S., Costa, F., Shah, S.A., Saunders, S.J., Barrangou, R., Brouns, S.J., Charpentier, E., Haft, D.H. et al. (2015) An updated evolutionary classification of CRISPR-Cas systems. Nat. Rev. Microbiol. 13, 722-736 CrossRef PubMed
-
(2015)
Nat. Rev. Microbiol.
, vol.13
, pp. 722-736
-
-
Makarova, K.S.1
Wolf, Y.I.2
Alkhnbashi, O.S.3
Costa, F.4
Shah, S.A.5
Saunders, S.J.6
Barrangou, R.7
Brouns, S.J.8
Charpentier, E.9
Haft, D.H.10
-
11
-
-
84947736727
-
Discovery and functional characterization of diverse class 2 CRISPR-Cas systems
-
CrossRef PubMed
-
Shmakov, S., Abudayyeh, O.O., Makarova, K.S., Wolf, Y.I., Gootenberg, J.S., Semenova, E., Minakhin, L., Joung, J., Konermann, S., Severinov, K. et al. (2015) Discovery and functional characterization of diverse class 2 CRISPR-Cas systems. Mol. Cell 60, 385-397 CrossRef PubMed
-
(2015)
Mol. Cell
, vol.60
, pp. 385-397
-
-
Shmakov, S.1
Abudayyeh, O.O.2
Makarova, K.S.3
Wolf, Y.I.4
Gootenberg, J.S.5
Semenova, E.6
Minakhin, L.7
Joung, J.8
Konermann, S.9
Severinov, K.10
-
12
-
-
84939232427
-
DNA and RNA interference mechanisms by CRISPR-Cas surveillance complexes
-
CrossRef PubMed
-
Plagens, A., Richter, H., Charpentier, E. and Randau, L. (2015) DNA and RNA interference mechanisms by CRISPR-Cas surveillance complexes. FEMS Microbiol. Rev. 39, 442-463 CrossRef PubMed
-
(2015)
FEMS Microbiol. Rev.
, vol.39
, pp. 442-463
-
-
Plagens, A.1
Richter, H.2
Charpentier, E.3
Randau, L.4
-
13
-
-
84946498330
-
A conserved structural chassis for mounting versatile CRISPR RNA-Guided immune responses
-
CrossRef PubMed
-
Jackson, R.N. and Wiedenheft, B. (2015) A conserved structural chassis for mounting versatile CRISPR RNA-Guided immune responses. Mol. Cell 58, 722-728 CrossRef PubMed
-
(2015)
Mol. Cell
, vol.58
, pp. 722-728
-
-
Jackson, R.N.1
Wiedenheft, B.2
-
14
-
-
34047118522
-
CRISPR provides acquired resistance against viruses in prokaryotes
-
CrossRef PubMed
-
Barrangou, R., Fremaux, C., Deveau, H., Richards, M., Boyaval, P., Moineau, S., Romero, D.A. and Horvath, P. (2007) CRISPR provides acquired resistance against viruses in prokaryotes. Science 315, 1709-1712 CrossRef PubMed
-
(2007)
Science
, vol.315
, pp. 1709-1712
-
-
Barrangou, R.1
Fremaux, C.2
Deveau, H.3
Richards, M.4
Boyaval, P.5
Moineau, S.6
Romero, D.A.7
Horvath, P.8
-
15
-
-
84861639567
-
Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli
-
CrossRef PubMed
-
Yosef, I., Goren, M.G. and Qimron, U. (2012) Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli. Nucleic Acids Res. 40, 5569-5576 CrossRef PubMed
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 5569-5576
-
-
Yosef, I.1
Goren, M.G.2
Qimron, U.3
-
16
-
-
84864864464
-
Molecular memory of prior infections activates the CRISPR/Cas adaptive bacterial immunity system
-
CrossRef PubMed
-
Datsenko, K.A., Pougach, K., Tikhonov, A., Wanner, B.L., Severinov, K. and Semenova, E. (2012) Molecular memory of prior infections activates the CRISPR/Cas adaptive bacterial immunity system. Nat. Commun. 3, 945 CrossRef PubMed
-
(2012)
Nat. Commun.
, vol.3
, pp. 945
-
-
Datsenko, K.A.1
Pougach, K.2
Tikhonov, A.3
Wanner, B.L.4
Severinov, K.5
Semenova, E.6
-
17
-
-
66349134987
-
Structural basis for DNase activity of a conserved protein implicated in CRISPR-mediated genome defense
-
CrossRef PubMed
-
Wiedenheft, B., Zhou, K., Jinek, M., Coyle, S.M., Ma, W. and Doudna, J.A. (2009) Structural basis for DNase activity of a conserved protein implicated in CRISPR-mediated genome defense. Structure 17, 904-912 CrossRef PubMed
-
(2009)
Structure
, vol.17
, pp. 904-912
-
-
Wiedenheft, B.1
Zhou, K.2
Jinek, M.3
Coyle, S.M.4
Ma, W.5
Doudna, J.A.6
-
18
-
-
78651083184
-
A dual function of the CRISPR-Cas system in bacterial antivirus immunity and DNA repair
-
CrossRef PubMed
-
Babu, M., Beloglazova, N., Flick, R., Graham, C., Skarina, T., Nocek, B., Gagarinova, A., Pogoutse, O., Brown, G., Binkowski, A. et al. (2011) A dual function of the CRISPR-Cas system in bacterial antivirus immunity and DNA repair. Mol. Microbiol. 79, 484-502 CrossRef PubMed
-
(2011)
Mol. Microbiol.
, vol.79
, pp. 484-502
-
-
Babu, M.1
Beloglazova, N.2
Flick, R.3
Graham, C.4
Skarina, T.5
Nocek, B.6
Gagarinova, A.7
Pogoutse, O.8
Brown, G.9
Binkowski, A.10
-
19
-
-
49649120271
-
A novel family of sequence-specific endoribonucleases associated with the clustered regularly interspaced short palindromic repeats
-
CrossRef PubMed
-
Beloglazova, N., Brown, G., Zimmerman, M.D., Proudfoot, M., Makarova, K.S., Kudritska, M., Kochinyan, S., Wang, S., Chruszcz, M., Minor, W. et al. (2008) A novel family of sequence-specific endoribonucleases associated with the clustered regularly interspaced short palindromic repeats. J. Biol. Chem. 283, 20361-20371 CrossRef PubMed
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 20361-20371
-
-
Beloglazova, N.1
Brown, G.2
Zimmerman, M.D.3
Proudfoot, M.4
Makarova, K.S.5
Kudritska, M.6
Kochinyan, S.7
Wang, S.8
Chruszcz, M.9
Minor, W.10
-
20
-
-
84867818484
-
Double-stranded endonuclease activity in Bacillus halodurans clustered regularly interspaced short palindromic repeats (CRISPR)-associated Cas2 protein
-
CrossRef PubMed
-
Nam, K.H., Ding, F., Haitjema, C., Huang, Q., DeLisa, M.P. and Ke, A. (2012) Double-stranded endonuclease activity in Bacillus halodurans clustered regularly interspaced short palindromic repeats (CRISPR)-associated Cas2 protein. J. Biol. Chem. 287, 35943-35952 CrossRef PubMed
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 35943-35952
-
-
Nam, K.H.1
Ding, F.2
Haitjema, C.3
Huang, Q.4
DeLisa, M.P.5
Ke, A.6
-
21
-
-
84870688524
-
Vivo protein interactions and complex formation in the Pectobacterium atrosepticum subtype I-F CRISPR/Cas System
-
CrossRef PubMed
-
Richter, C., Gristwood, T., Clulow, J.S. and Fineran, P.C. (2012) In vivo protein interactions and complex formation in the Pectobacterium atrosepticum subtype I-F CRISPR/Cas System. PloS One 7, e49549 CrossRef PubMed
-
(2012)
PloS One
, vol.7
, pp. e49549
-
-
Richter, C.1
Gristwood, T.2
Clulow, J.S.3
Fineran, P.C.4
-
22
-
-
84902010986
-
Cas1-Cas2 complex formation mediates spacer acquisition during CRISPR-Cas adaptive immunity
-
CrossRef PubMed
-
Nuñez, J.K., Kranzusch, P.J., Noeske, J., Wright, A.V., Davies, C.W. and Doudna, J.A. (2014) Cas1-Cas2 complex formation mediates spacer acquisition during CRISPR-Cas adaptive immunity. Nat. Struct. Mol. Biol. 21, 528-534 CrossRef PubMed
-
(2014)
Nat. Struct. Mol. Biol.
, vol.21
, pp. 528-534
-
-
Nuñez, J.K.1
Kranzusch, P.J.2
Noeske, J.3
Wright, A.V.4
Davies, C.W.5
Doudna, J.A.6
-
23
-
-
84924664059
-
Integrase-mediated spacer acquisition during CRISPR-Cas adaptive immunity
-
CrossRef PubMed
-
Nuñez, J.K., Lee, A.S., Engelman, A. and Doudna, J.A. (2015) Integrase-mediated spacer acquisition during CRISPR-Cas adaptive immunity. Nature 519, 193-198 CrossRef PubMed
-
(2015)
Nature
, vol.519
, pp. 193-198
-
-
Nuñez, J.K.1
Lee, A.S.2
Engelman, A.3
Doudna, J.A.4
-
24
-
-
84928473578
-
CRISPR adaptation biases explain preference for acquisition of foreign DNA
-
CrossRef PubMed
-
Levy, A., Goren, M.G., Yosef, I., Auster, O., Manor, M., Amitai, G., Edgar, R., Qimron, U. and Sorek, R. (2015) CRISPR adaptation biases explain preference for acquisition of foreign DNA. Nature 520, 505-510 CrossRef PubMed
-
(2015)
Nature
, vol.520
, pp. 505-510
-
-
Levy, A.1
Goren, M.G.2
Yosef, I.3
Auster, O.4
Manor, M.5
Amitai, G.6
Edgar, R.7
Qimron, U.8
Sorek, R.9
-
25
-
-
84860433123
-
CRISPR interference directs strand specific spacer acquisition
-
CrossRef PubMed
-
Swarts, D.C., Mosterd, C., van Passel, M.W. and Brouns, S.J. (2012) CRISPR interference directs strand specific spacer acquisition. PloS One 7, e35888 CrossRef PubMed
-
(2012)
PloS One
, vol.7
, pp. e35888
-
-
Swarts, D.C.1
Mosterd, C.2
Van Passel, M.W.3
Brouns, S.J.4
-
26
-
-
84899087750
-
Degenerate target sites mediate rapid primed CRISPR adaptation
-
CrossRef PubMed
-
Fineran, P.C., Gerritzen, M.J., Suárez-Diez, M., Künne, T., Boekhorst, J., van Hijum, S.A., Staals, R.H. and Brouns, S.J. (2014) Degenerate target sites mediate rapid primed CRISPR adaptation. Proc. Natl. Acad. Sci. U.S.A. 111, E1629-E1638 CrossRef PubMed
-
(2014)
Proc. Natl. Acad. Sci. U.S.A.
, vol.111
, pp. E1629-E1638
-
-
Fineran, P.C.1
Gerritzen, M.J.2
Suárez-Diez, M.3
Künne, T.4
Boekhorst, J.5
Van Hijum, S.A.6
Staals, R.H.7
Brouns, S.J.8
-
27
-
-
84905594146
-
Priming in the Type I-F CRISPR-Cas system triggers strand-independent spacer acquisition, bi-directionally from the primed protospacer
-
CrossRef PubMed
-
Richter, C., Dy, R.L., McKenzie, R.E., Watson, B.N., Taylor, C., Chang, J.T., McNeil, M.B., Staals, R.H. and Fineran, P.C. (2014) Priming in the Type I-F CRISPR-Cas system triggers strand-independent spacer acquisition, bi-directionally from the primed protospacer. Nucleic Acids Res. 42, 8516-8526 CrossRef PubMed
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 8516-8526
-
-
Richter, C.1
Dy, R.L.2
McKenzie, R.E.3
Watson, B.N.4
Taylor, C.5
Chang, J.T.6
McNeil, M.B.7
Staals, R.H.8
Fineran, P.C.9
-
28
-
-
84946562795
-
Surveillance and processing of foreign DNA by the Escherichia coli CRISPR-Cas system
-
CrossRef PubMed
-
Redding, S., Sternberg, S.H., Marshall, M., Gibb, B., Bhat, P., Guegler, C.K., Wiedenheft, B., Doudna, J.A. and Greene, E.C. (2015) Surveillance and processing of foreign DNA by the Escherichia coli CRISPR-Cas system. Cell 163, 854-865 CrossRef PubMed
-
(2015)
Cell
, vol.163
, pp. 854-865
-
-
Redding, S.1
Sternberg, S.H.2
Marshall, M.3
Gibb, B.4
Bhat, P.5
Guegler, C.K.6
Wiedenheft, B.7
Doudna, J.A.8
Greene, E.C.9
-
29
-
-
84946130269
-
Structural and mechanistic basis of PAM-dependent spacer acquisition in CRISPR-Cas systems
-
CrossRef PubMed
-
Wang, J., Li, J., Zhao, H., Sheng, G., Wang, M., Yin, M. and Wang, Y. (2015) Structural and mechanistic basis of PAM-dependent spacer acquisition in CRISPR-Cas systems. Cell 163, 840-853 CrossRef PubMed
-
(2015)
Cell
, vol.163
, pp. 840-853
-
-
Wang, J.1
Li, J.2
Zhao, H.3
Sheng, G.4
Wang, M.5
Yin, M.6
Wang, Y.7
-
30
-
-
64049118040
-
Short motif sequences determine the targets of the prokaryotic CRISPR defence system
-
CrossRef PubMed
-
Mojica, F.J., Diez-Villasenor, C., Garcia-Martinez, J. and Almendros, C. (2009) Short motif sequences determine the targets of the prokaryotic CRISPR defence system. Microbiology 155, 733-740 CrossRef PubMed
-
(2009)
Microbiology
, vol.155
, pp. 733-740
-
-
Mojica, F.J.1
Diez-Villasenor, C.2
Garcia-Martinez, J.3
Almendros, C.4
-
31
-
-
84947495037
-
Foreign DNA capture during CRISPR-Cas adaptive immunity
-
CrossRef PubMed
-
Nuñez, J.K., Harrington, L.B., Kranzusch, P.J., Engelman, A.N. and Doudna, J.A. (2015) Foreign DNA capture during CRISPR-Cas adaptive immunity. Nature 527, 535-538 CrossRef PubMed
-
(2015)
Nature
, vol.527
, pp. 535-538
-
-
Nuñez, J.K.1
Harrington, L.B.2
Kranzusch, P.J.3
Engelman, A.N.4
Doudna, J.A.5
-
32
-
-
84866313681
-
Experimental definition of a clustered regularly interspaced short palindromic duplicon in Escherichia coli
-
CrossRef PubMed
-
Goren, M.G., Yosef, I., Auster, O. and Qimron, U. (2012) Experimental definition of a clustered regularly interspaced short palindromic duplicon in Escherichia coli. J.Mol. Biol. 423, 14-16 CrossRef PubMed
-
(2012)
J. Mol. Biol.
, vol.423
, pp. 14-16
-
-
Goren, M.G.1
Yosef, I.2
Auster, O.3
Qimron, U.4
-
33
-
-
84941907747
-
Intrinsic sequence specificity of the Cas1 integrase directs new spacer acquisition
-
CrossRef
-
Rollie, C., Schneider, S., Brinkmann, A.S., Bolt, E.L. and White, M.F. (2015) Intrinsic sequence specificity of the Cas1 integrase directs new spacer acquisition. Elife 4, e08716 CrossRef
-
(2015)
Elife
, vol.4
, pp. e08716
-
-
Rollie, C.1
Schneider, S.2
Brinkmann, A.S.3
Bolt, E.L.4
White, M.F.5
-
34
-
-
84961952607
-
Different genome stability proteins underpin primed and naïve adaptation in E. Coli CRISPR-Cas immunity
-
CrossRef PubMed
-
Ivanèiæ-Baæe, I., Cass, S.D., Wearne, S.J. and Bolt, E.L. (2015) Different genome stability proteins underpin primed and naïve adaptation in E. coli CRISPR-Cas immunity. Nucleic Acids Res. 43, 10821-10830 CrossRef PubMed
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. 10821-10830
-
-
Ivanèiæ-Baæe, I.1
Cass, S.D.2
Wearne, S.J.3
Bolt, E.L.4
-
35
-
-
84904019733
-
Detection and characterization of spacer integration intermediates in type I-E CRISPR-Cas system
-
CrossRef PubMed
-
Arslan, Z., Hermanns, V., Wurm, R., Wagner, R. and Pul, U. (2014) Detection and characterization of spacer integration intermediates in type I-E CRISPR-Cas system. Nucleic Acids Res. 42, 7884-7893 CrossRef PubMed
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 7884-7893
-
-
Arslan, Z.1
Hermanns, V.2
Wurm, R.3
Wagner, R.4
Pul, U.5
-
36
-
-
0025837193
-
A wide-host-range suicide vector for improving reverse genetics in gram-negative bacteria: Inactivation of the blaA gene of Yersinia enterocolitica
-
CrossRef PubMed
-
Kaniga, K., Delor, I. and Cornelis, G.R. (1991) A wide-host-range suicide vector for improving reverse genetics in gram-negative bacteria: inactivation of the blaA gene of Yersinia enterocolitica.Gene109, 137-141 CrossRef PubMed
-
(1991)
Gene
, vol.109
, pp. 137-141
-
-
Kaniga, K.1
Delor, I.2
Cornelis, G.R.3
-
37
-
-
29244449352
-
A GntR family transcriptional regulator (PigT) controls gluconate-mediated repression and defines a new, independent pathway for regulation of the tripyrrole antibiotic, prodigiosin, in Serratia
-
CrossRef PubMed
-
Fineran, P.C., Everson, L., Slater, H. and Salmond, G.P.C. (2005) A GntR family transcriptional regulator (PigT) controls gluconate-mediated repression and defines a new, independent pathway for regulation of the tripyrrole antibiotic, prodigiosin, in Serratia. Microbiology 151, 3833-3845 CrossRef PubMed
-
(2005)
Microbiology
, vol.151
, pp. 3833-3845
-
-
Fineran, P.C.1
Everson, L.2
Slater, H.3
Salmond, G.P.C.4
-
38
-
-
0024520745
-
Site-directed mutagenesis by overlap extension using the polymerase chain-reaction
-
CrossRef PubMed
-
Ho, S.N., Hunt, H.D., Horton, R.M., Pullen, J.K. and Pease, L.R. (1989) Site-directed mutagenesis by overlap extension using the polymerase chain-reaction. Gene 77, 51-59 CrossRef PubMed
-
(1989)
Gene
, vol.77
, pp. 51-59
-
-
Ho, S.N.1
Hunt, H.D.2
Horton, R.M.3
Pullen, J.K.4
Pease, L.R.5
-
39
-
-
0020622171
-
A Broad-Host-Range cloning vector transposable to various replicons
-
CrossRef PubMed
-
Grinter, N.J. (1983) A Broad-Host-Range cloning vector transposable to various replicons. Gene 21, 133-143 CrossRef PubMed
-
(1983)
Gene
, vol.21
, pp. 133-143
-
-
Grinter, N.J.1
-
40
-
-
0025047590
-
Transposon vectors containing non-antibiotic resistance selection markers for cloning and stable chromosomal insertion of foreign genes in Gram-Negative Bacteria
-
PubMed
-
Herrero, M., Delorenzo, V. and Timmis, K.N. (1990) Transposon vectors containing non-antibiotic resistance selection markers for cloning and stable chromosomal insertion of foreign genes in Gram-Negative Bacteria. J. Bacteriol. 172, 6557-6567 PubMed
-
(1990)
J. Bacteriol.
, vol.172
, pp. 6557-6567
-
-
Herrero, M.1
Delorenzo, V.2
Timmis, K.N.3
-
41
-
-
84876845227
-
Cytotoxic chromosomal targeting by CRISPR/Cas systems can reshape bacterial genomes and expel or remodel pathogenicity islands
-
CrossRef PubMed
-
Vercoe, R.B., Chang, J.T., Dy, R.L., Taylor, C., Gristwood, T., Clulow, J.S., Richter, C., Przybilski, R., Pitman, A.R. and Fineran, P.C. (2013) Cytotoxic chromosomal targeting by CRISPR/Cas systems can reshape bacterial genomes and expel or remodel pathogenicity islands. PLoS Genet. 9, e1003454 CrossRef PubMed
-
(2013)
PLoS Genet
, vol.9
, pp. e1003454
-
-
Vercoe, R.B.1
Chang, J.T.2
Dy, R.L.3
Taylor, C.4
Gristwood, T.5
Clulow, J.S.6
Richter, C.7
Przybilski, R.8
Pitman, A.R.9
Fineran, P.C.10
-
42
-
-
79956084965
-
Csy4 is responsible for CRISPR RNA processing in Pectobacterium atrosepticum
-
CrossRef PubMed
-
Przybilski, R., Richter, C., Gristwood, T., Clulow, J.S., Vercoe, R.B. and Fineran, P.C. (2011) Csy4 is responsible for CRISPR RNA processing in Pectobacterium atrosepticum. RNA Biol. 8, 517-528 CrossRef PubMed
-
(2011)
RNA Biol.
, vol.8
, pp. 517-528
-
-
Przybilski, R.1
Richter, C.2
Gristwood, T.3
Clulow, J.S.4
Vercoe, R.B.5
Fineran, P.C.6
-
43
-
-
34248559599
-
Gene splicing and mutagenesis by PCR-driven overlap extension
-
CrossRef PubMed
-
Heckman, K.L. and Pease, L.R. (2007) Gene splicing and mutagenesis by PCR-driven overlap extension. Nat. Protoc. 2, 924-932 CrossRef PubMed
-
(2007)
Nat. Protoc.
, vol.2
, pp. 924-932
-
-
Heckman, K.L.1
Pease, L.R.2
-
44
-
-
0029018327
-
Tight regulation, modulation, and High-level expression by vectors containing the Arabinose P-Bad promoter
-
PubMed
-
Guzman, L.M., Belin, D., Carson, M.J. and Beckwith, J. (1995) Tight regulation, modulation, and High-level expression by vectors containing the Arabinose P-Bad promoter. J. Bacteriol. 177, 4121-4130 PubMed
-
(1995)
J. Bacteriol.
, vol.177
, pp. 4121-4130
-
-
Guzman, L.M.1
Belin, D.2
Carson, M.J.3
Beckwith, J.4
-
46
-
-
79953737180
-
Overview of the CCP4 suite and current developments
-
CrossRef
-
Winn, M.D., Ballard, C.C., Cowtan, K.D., Dodson, E.J., Emsley, P., Evans, P.R., Keegan, R.M., Krissinel, E.B., Leslie, A.G.W., McCoy, A. et al. (2011) Overview of the CCP4 suite and current developments. Acta Crystallogr. Sect. D-Biol. Crystallogr. 67, 235-242 CrossRef
-
(2011)
Acta Crystallogr. Sect. D-Biol. Crystallogr.
, vol.67
, pp. 235-242
-
-
Winn, M.D.1
Ballard, C.C.2
Cowtan, K.D.3
Dodson, E.J.4
Emsley, P.5
Evans, P.R.6
Keegan, R.M.7
Krissinel, E.B.8
Leslie, A.G.W.9
McCoy, A.10
-
47
-
-
34447508216
-
Phaser crystallographic software
-
CrossRef PubMed
-
Mccoy, A.J., Grosse-Kunstleve, R.W., Adams, P.D., Winn, M.D., Storoni, L.C. and Read, R.J. (2007) Phaser crystallographic software. J. Appl. Crystallogr. 40, 658-674 CrossRef PubMed
-
(2007)
J. Appl. Crystallogr.
, vol.40
, pp. 658-674
-
-
Mccoy, A.J.1
Grosse-Kunstleve, R.W.2
Adams, P.D.3
Winn, M.D.4
Storoni, L.C.5
Read, R.J.6
-
48
-
-
77949535720
-
Features and development of Coot
-
CrossRef
-
Emsley, P., Lohkamp, B., Scott, W.G. and Cowtan, K. (2010) Features and development of Coot. Acta Crystallogr. Sect. D-Biol. Crystallogr. 66, 486-501 CrossRef
-
(2010)
Acta Crystallogr. Sect. D-Biol. Crystallogr.
, vol.66
, pp. 486-501
-
-
Emsley, P.1
Lohkamp, B.2
Scott, W.G.3
Cowtan, K.4
-
49
-
-
79953763877
-
REFMAC5 for the refinement of macromolecular crystal structures
-
CrossRef
-
Murshudov, G.N., Skubak, P., Lebedev, A.A., Pannu, N.S., Steiner, R.A., Nicholls, R.A., Winn, M.D., Long, F. and Vagin, A.A. (2011) REFMAC5 for the refinement of macromolecular crystal structures. Acta Crystallogr. Sect. D-Biol. Crystallogr. 67, 355-367 CrossRef
-
(2011)
Acta Crystallogr. Sect. D-Biol. Crystallogr.
, vol.67
, pp. 355-367
-
-
Murshudov, G.N.1
Skubak, P.2
Lebedev, A.A.3
Pannu, N.S.4
Steiner, R.A.5
Nicholls, R.A.6
Winn, M.D.7
Long, F.8
Vagin, A.A.9
-
50
-
-
76449098262
-
PHENIX: A comprehensive Python-based system for macromolecular structure solution
-
CrossRef
-
Adams, P.D., Afonine, P.V., Bunkoczi, G., Chen, V.B., Davis, I.W., Echols, N., Headd, J.J., Hung, L.W., Kapral, G.J., Grosse-Kunstleve, R.W. et al. (2010) PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr. Sect. D-Biol. Crystallogr. 66, 213-221 CrossRef
-
(2010)
Acta Crystallogr. Sect. D-Biol. Crystallogr.
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
Afonine, P.V.2
Bunkoczi, G.3
Chen, V.B.4
Davis, I.W.5
Echols, N.6
Headd, J.J.7
Hung, L.W.8
Kapral, G.J.9
Grosse-Kunstleve, R.W.10
-
52
-
-
4444221565
-
UCSF Chimera - A visualization system for exploratory research and analysis
-
CrossRef PubMed
-
Pettersen, E.F., Goddard, T.D., Huang, C.C., Couch, G.S., Greenblatt, D.M., Meng, E.C. and Ferrin, T.E. (2004) UCSF Chimera - a visualization system for exploratory research and analysis. J. Comput. Chem. 25, 1605-1612 CrossRef PubMed
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
Goddard, T.D.2
Huang, C.C.3
Couch, G.S.4
Greenblatt, D.M.5
Meng, E.C.6
Ferrin, T.E.7
-
53
-
-
84895823059
-
Adaptation of the Haloarcula hispanica CRISPR-Cas system to a purified virus strictly requires a priming process
-
CrossRef PubMed
-
Li, M., Wang, R., Zhao, D. and Xiang, H. (2014) Adaptation of the Haloarcula hispanica CRISPR-Cas system to a purified virus strictly requires a priming process. Nucleic Acids Res. 42, 2483-2492 CrossRef PubMed
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 2483-2492
-
-
Li, M.1
Wang, R.2
Zhao, D.3
Xiang, H.4
-
54
-
-
84922998282
-
Cas9 function and host genome sampling in Type II-A CRISPR-Cas adaptation
-
CrossRef PubMed
-
Wei, Y., Terns, R.M. and Terns, M.P. (2015) Cas9 function and host genome sampling in Type II-A CRISPR-Cas adaptation. Genes Dev. 29, 356-361 CrossRef PubMed
-
(2015)
Genes Dev.
, vol.29
, pp. 356-361
-
-
Wei, Y.1
Terns, R.M.2
Terns, M.P.3
-
55
-
-
84924705939
-
Cas9 specifies functional viral targets during CRISPR-Cas adaptation
-
CrossRef PubMed
-
Heler, R., Samai, P., Modell, J.W., Weiner, C., Goldberg, G.W., Bikard, D. and Marraffini, L.A. (2015) Cas9 specifies functional viral targets during CRISPR-Cas adaptation. Nature 519, 199-202 CrossRef PubMed
-
(2015)
Nature
, vol.519
, pp. 199-202
-
-
Heler, R.1
Samai, P.2
Modell, J.W.3
Weiner, C.4
Goldberg, G.W.5
Bikard, D.6
Marraffini, L.A.7
-
56
-
-
84888838217
-
Crystal structure of Cas1 from Archaeoglobus fulgidus and characterization of its nucleolytic activity
-
CrossRef PubMed
-
Kim, T.Y., Shin, M., Huynh Thi Yen, L. and Kim, J.S. (2013) Crystal structure of Cas1 from Archaeoglobus fulgidus and characterization of its nucleolytic activity. Biochem. Biophys. Res. Commun. 441, 720-725 CrossRef PubMed
-
(2013)
Biochem. Biophys. Res. Commun.
, vol.441
, pp. 720-725
-
-
Kim, T.Y.1
Shin, M.2
YenHuynh Thi, L.3
Kim, J.S.4
-
57
-
-
84964556762
-
Foreign DNA acquisition by the I-F CRISPR-Cas system requires all components of the interference machinery
-
CrossRef PubMed
-
Vorontsova, D., Datsenko, K.A., Medvedeva, S., Bondy-Denomy, J., Savitskaya, E.E., Pougach, K., Logacheva, M., Wiedenheft, B., Davidson, A.R., Severinov, K. and Semenova, E. (2015) Foreign DNA acquisition by the I-F CRISPR-Cas system requires all components of the interference machinery. Nucleic Acids Res. 43, 10848-10860 CrossRef PubMed
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. 10848-10860
-
-
Vorontsova, D.1
Datsenko, K.A.2
Medvedeva, S.3
Bondy-Denomy, J.4
Savitskaya, E.E.5
Pougach, K.6
Logacheva, M.7
Wiedenheft, B.8
Davidson, A.R.9
Severinov, K.10
Semenova, E.11
-
58
-
-
4644355809
-
The architecture of metal coordination groups in proteins
-
CrossRef
-
Harding, M.M. (2004) The architecture of metal coordination groups in proteins. Acta Crystallogr. Sect. D-Biol. Crystallogr. 60, 849-859 CrossRef
-
(2004)
Acta Crystallogr. Sect. D-Biol. Crystallogr.
, vol.60
, pp. 849-859
-
-
Harding, M.M.1
-
59
-
-
0033591238
-
The active site of Serratia endonuclease contains a conserved magnesium-water cluster
-
CrossRef PubMed
-
Miller, M.D., Cai, J. and Krause, K.L. (1999) The active site of Serratia endonuclease contains a conserved magnesium-water cluster. J. Mol. Biol. 288, 975-987 CrossRef PubMed
-
(1999)
J. Mol. Biol.
, vol.288
, pp. 975-987
-
-
Miller, M.D.1
Cai, J.2
Krause, K.L.3
-
60
-
-
15844390228
-
CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies
-
CrossRef PubMed
-
Pourcel, C., Salvignol, G. and Vergnaud, G. (2005) CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies. Microbiology 151, 653-663 CrossRef PubMed
-
(2005)
Microbiology
, vol.151
, pp. 653-663
-
-
Pourcel, C.1
Salvignol, G.2
Vergnaud, G.3
-
61
-
-
3342994863
-
Genome sequence of the enterobacterial phytopathogen Erwinia carotovora subsp atroseptica and characterization of virulence factors
-
CrossRef PubMed
-
Bell, K.S., Sebaihia, M., Pritchard, L., Holden, M.T.G., Hyman, L.J., Holeva, M.C., Thomson, N.R., Bentley, S.D., Churcher, L.J.C., Mungall, K. et al. (2004) Genome sequence of the enterobacterial phytopathogen Erwinia carotovora subsp atroseptica and characterization of virulence factors. Proc. Natl. Acad. Sci. U.S.A. 101, 11105-11110 CrossRef PubMed
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 11105-11110
-
-
Bell, K.S.1
Sebaihia, M.2
Pritchard, L.3
Holden, M.T.G.4
Hyman, L.J.5
Holeva, M.C.6
Thomson, N.R.7
Bentley, S.D.8
Churcher, L.J.C.9
Mungall, K.10
-
62
-
-
0035964342
-
Electrostatics of nanosystems: Application to microtubules and the ribosome
-
CrossRef PubMed
-
Baker, N.A., Sept, D., Joseph, S., Holst, M.J. and McCammon, J.A. (2001) Electrostatics of nanosystems: application to microtubules and the ribosome. Proc. Natl. Acad. Sci. U.S.A. 98, 10037-10041 CrossRef PubMed
-
(2001)
Proc. Natl. Acad. Sci. U. S. A.
, vol.98
, pp. 10037-10041
-
-
Baker, N.A.1
Sept, D.2
Joseph, S.3
Holst, M.J.4
McCammon, J.A.5
|